Journal of Systematics and Evolution

Article	Citations
A worldwide phylogenetic classification of the Poaceae (Gramineae) III: An update	93
Evolutionary origin of species diversity on the Qinghai–Tibet Plateau	67
A new classification of Cyperaceae (Poales) supported by phylogenomic data	60
A framework infrageneric classification ofCarex(Cyperaceae) and its organizing principles	54
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae	53
Grasses through space and time: An overview of the biogeographical and macroevolutionary history of Poaceae	49
A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily	47
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae)	41
Origins of cultivars of Chrysanthemum—Evidence from the chloroplast genome and nuclear LFY gene	38
Phylogenomics enables biogeographic analysis and a new subtribal classification of Andropogoneae (Poaceae—Panicoideae)	35
Plastid and nuclear phylogenomic incongruences and biogeographic implications of Magnolia s.l. (Magnoliaceae)	34
Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae	27
Fine‐scale north‐to‐south genetic admixture profile in Shaanxi Han Chinese revealed by genome‐wide demographic history reconstruction	25
Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica	23
Out of the Pan‐Himalaya: Evolutionary history of the Paeoniaceae revealed by phylogenomics	23
A multilocus phylogeny of the moss genus Didymodon and allied genera (Pottiaceae): Generic delimitations and their implications for systematics	20
Macroevolutionary insights into sedges (Carex: Cyperaceae): The effects of rapid chromosome number evolution on lineage diversification	20
Extensive ethnolinguistic diversity at the crossroads of North China and South Siberia reflects multiple sources of genetic diversity	19
Phylogeny and biogeography of Fagus (Fagaceae) based on 28 nuclear single/low‐copy loci	18
The diversification of the northern temperate woody flora – A case study of the Elm family (Ulmaceae) based on phylogenomic and paleobotanical evidence	18
Dispersal and adaptive radiation of Bidens (Compositae) across the remote archipelagoes of Polynesia	18
Geographical vs. ecological diversification inCarexsectionPhacocystis(Cyperaceae): Patterns hidden behind a twisted taxonomy	18
Ecological and geological processes impacting speciation modes drive the formation of wide‐range disjunctions within tribe Putorieae (Rubiaceae)	17
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants	16
Linalool: A ubiquitous floral volatile mediating the communication between plants and insects	15

Phylogenetics of global Camellia (Theaceae) based on three nuclear regions and its implications for systematics and evolutionary history	14
Phylogenomics of Perityleae (Compositae) provides new insights into morphological and chromosomal evolution of the rock daisies	14
Phylogenomic and comparative analyses of Rheum (Polygonaceae, Polygonoideae)	14
Cryptic diversity and significant cophylogenetic signal detected by DNA barcoding the rust fungi (Pucciniaceae) of Cyperaceae–Juncaceae	14
Diversity of higher plants in China	13
Assessing the sensitivity of divergence time estimates to locus sampling, calibration points, and model priors in a RAD‐seq phylogeny ofCarexsectionSchoenoxiphium	13
Plastid phylogenomics shed light on intergeneric relationships and spatiotemporal evolutionary history of Melocanninae (Poaceae: Bambusoideae)	13
Extensive Miocene speciation in and out of Indochina: The biogeographic history of Typhonium sensu stricto (Araceae) and its implication for the assembly of Indochina flora	13
A systematic study of North American Angelica species (Apiaceae) based on nrDNA ITS and cpDNA sequences and fruit morphology	12
Phylogenomic study of Amorphophallus (Alismatales; Araceae): When plastid DNA gene sequences help to resolve the backbone subgeneric delineation	12
Reconstructing the genetic admixture history of Tai‐Kadai and Sinitic people: Insights from genome‐wide SNP data from South China	12
Northern gene flow into southeastern East Asians inferred from genome‐wide array genotyping	12
Integrative taxonomy of herbaceous plants with narrow fragmented distributions: A case study on Primula merrilliana species complex	11
Fossil fruits of Illigera (Hernandiaceae) from the Eocene of central Tibetan Plateau	11
Low genetic diversity and population connectivity fuel vulnerability to climate change for the Tertiary relict pine Pinus bungeana	11
Landscape genomics reveals genetic evidence of local adaptation in a widespread tree, the Chinese wingnut (Pterocarya stenoptera)	11
Re‐terrestrialization in the phylogeny of epiphytic plant lineages: Microsoroid ferns as a case study	11
Targeted sequencing supports morphology and embryo features in resolving the classification of Cyperaceae tribe Fuireneae s.l.	11
Thistle be a mess: Untangling the taxonomy of Cirsium (Cardueae: Compositae) in North America	10
Chloroplast genomes of key species shed light on the evolution of the ancient genusIsoetes	10
Comparative analysis of 343 plastid genomes of Solanum section Petota: Insights into potato diversity, phylogeny, and species discrimination	10
Natural interploidy hybridization among the key taxa involved in the origin of horticultural chrysanthemums	10
Joint effect of phylogenetic relatedness and trait selection on the elevational distribution of Rhododendron species	10
Integrating coalescent‐based species delimitation with ecological niche modeling delimited two species within theStewartia sinensiscomplex (Theaceae)	10
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution	10
Plant–insect chemical communication in ecological communities: An information theory perspective	10
Phylogenomics and biogeography of Wisteria: Implications on plastome evolution among inverted repeat‐lacking clade (IRLC) legumes	10
Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses	9
Fruits of Firmiana and Craigia (Malvaceae) from the Eocene of the Central Tibetan Plateau with emphasis on biogeographic history	9
Phylogenomic analysis of the hemp family (Cannabaceae) reveals deep cyto‐nuclear discordance and provides new insights into generic relationships	9
Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes	9
Miocene Ethiopian amber: A new source of fossil cryptogams	9
Phylogenetic relationships, hybridization events, and drivers of diversification of East Asian wild grapes as revealed by phylogenomic analyses	9
Phylogeography of Scots pine in Europe and Asia based on mtDNA polymorphisms	8
Phylogenomics and biogeography of Torreya (Taxaceae)—Integrating data from three organelle genomes, morphology, and fossils and a practical method for reducing missing data from RAD‐seq	8
Global dispersal and diversification of the genus Schoenus (Cyperaceae) from the Western Australian biodiversity hotspot	8
Origin and evolution of the Micronesian biota: Insights from molecular phylogenies and biogeography reveal long‐distance dispersal scenarios and founder‐event speciation	8
An integrative taxonomic study of Santolina (Asteraceae) from southern France and north‐eastern Spain reveals new endemic taxa	8
Phylogeny and biogeography of Calamagrostis (Poaceae: Pooideae: Poeae: Agrostidinae), description of a new genus, Condilorachia (Calothecinae), and expansion of Greeneochloa and <	8
Plant diversity and ecology on the Qinghai–Tibet Plateau	8
Phylogeny, classification, and biogeography of Afrotrichloris, Apochiton, Coelachyrum, Dinebra, Eleusine, Leptochloa, Schoenefeldia, and a new genus, Schoenefeldiella (Poaceae: Chloridoi	8
Biogeography, timing, and life‐history traits in the PPAM clade: Coleanthinae (syn. Puccinelliinae), Poinae, Alopecurinae superclade, Miliinae, and Avenulinae and Phleinae (Poaceae, Pooideae, Poeae)	7
Mutational meltdown or controlled chain reaction: The dynamics of rapid plastome evolution in the hyperdiversity of Poaceae	7
Monograph of Carex section Schiedeanae (Cyperaceae): Unexpected taxonomic and ecological diversity in a Mexican sedge clade	7
Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation, and biogeography of the Sino‐Japanese disjunctive Diabelia (Caprifoliaceae)	7
Ecological specialization promotes diversity and diversification in the Eastern Mediterranean genus Ricotia (Brassicaceae)	7
Integrative taxonomy recognized a new cryptic species within Stipa grandis from Loess Plateau of China	7
Rapid structural evolution of Dendrobium mitogenomes and mito‐nuclear phylogeny discordances in Dendrobium (Orchidaceae)	7
Altitude‐related shift of relative abundance from insect to sunbird pollination in Elaeagnus umbellata (Elaeagnaceae)	7
Pleurocordyceps gen. nov. for a clade of fungi previously included in Polycephalomyces based on molecular phylogeny and morphology	7

New Eocene fossil fruits and leaves of Menispermaceae from the central Tibetan Plateau and their biogeographic implications	7
Linked selection, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence in Quercus dentata	7
Plastid phylogenomics and biogeography of the genus Monochoria (Pontederiaceae)	7
Exploring the impact of RNA editing on mitochondrial phylogenetic analyses in liverworts, an early land plant lineage	7
Phylogeny and taxonomy of Afrocayratia, a new genus of Vitaceae from continental Africa and Madagascar	7
Collections‐based systematics and biogeography in the 21st century: A tribute to Dr. Vicki Funk	7
A comprehensive species sampling sheds light on the molecular phylogenetics of Calothecinae (Poaceae, Pooideae, Poeae): Evidence for a new subtribe and multiple genera within the Chascolytrum c	6
Trait evolution rates shape continental patterns of species richness in North America's most diverse angiosperm genus (Carex, Cyperaceae)	6
Hybridization and genome duplication for early evolutionary success in the Asian Palmate group of Araliaceae	6
Revisiting of Carex sect. Confertiflorae s.l. (Cyperaceae): New data from molecular and morphological evidence and first insights on Carex biogeography in East Asia	6
Sexual dimorphism, temporal niche differentiation, and evidence for the Jack Sprat effect in an annual dioecious plant	6
A comprehensive analysis of higher‐level phylogenetic relationships of Hemiptera based on transcriptome data	6
Enhanced precipitation has driven the evolution of subtropical evergreen broad‐leaved forests in eastern China since the early Miocene: Evidence from ring‐cupped oaks	6
Reproductive strategies of animal‐pollinated plants on high mountains: A review of studies from the “Third Pole”	6
First fossil evidence of Palaeocarya (Engelhardioideae: Juglandaceae) from India and its biogeographical implications	6
Phylogenetic relationships withinPyrenodesmiasensu lato and the role of pigments in its taxonomic interpretation	6
Soil burial induced dormancy in weedy rice seeds through hormone level changes: Implications in adaptive evolution and weed control	6
Population genetic structure and classification of cultivated and wild pea (Pisum sp.) based on morphological traits and SSR markers	6
Secondary pollen presentation: More than to increase pollen transfer precision	6
Herbarium phylogenomics: Resolving the generic status of the enigmatic Pseudobartsia (Orobanchaceae)	6
Time to update the sectional classification ofIlex(Aquifoliaceae): New insights fromIlexphylogeny, morphology, and distribution	6
DNA barcodes and microsatellites: How they complement for species identification in the complex genus Tamarix (Tamaricaceae)	6
A cytosystematic study of the Dianthus virgineus complex (Caryophyllaceae) in the Central Mediterranean	6
Polyploidy in Cupressaceae: Discovery of a new naturally occurring tetraploid, Xanthocyparis vietnamensis	5
Gondwanan survivor lineages and the high‐risk biogeography of Anthropocene Southeast Asia	5
Phylogeography of the widespread fern Lemmaphyllum in East Asia: species differentiation and population dynamics in response to change in climate and geography	5
Genomic variation patterns of subspecies defined by phenotypic criteria: Analyses of the mangrove species complex, Avicennia marina	5
Phylogeny and divergence time estimation of the genus Didymodon (Pottiaceae) based on nuclear and chloroplast markers	5
The Australasian grass flora in a global context	5
Floral scent emission is the highest at the second night of anthesis in Lonicera japonica (Caprifoliaceae)	5
Plant scent and plant–insect interactions—Review and outlook from a macroevolutionary perspective	5
Genomic signals reveal past evolutionary dynamics ofQuercus schottkyanaand its response to future climate change	5
Water relations of “trailing‐edge” evergreen oaks in the semi‐arid upper Yangtze region, SE Himalaya	5
Combining population genomics and ecological niche modeling to assess taxon limits between Carex jemtlandica and C. lepidocarpa	5
Biogeographic patterns of polyploid species for the angiosperm flora in China	5
Integrative taxonomy and phylogeny of leafless Vanilla orchids from the South‐West Indian Ocean region reveal two new Malagasy species	5
A molecular approach to the phylogeny of the moss genus Pseudocrossidium (Pottiaceae, Bryopsida) and its taxonomic implications	5
Genome‐wide investigation and transcriptional profiling of the oxidosqualene cyclase (OSC) genes in wheat (Triticum aestivum)	4
Rise of herbaceous diversity at the southeastern margin of the Tibetan Plateau: First insight from fossils	4
Integrative taxonomy of the stalk‐eyed bug genus Chauliops (Heteroptera: Malcidae: Chauliopinae) reveals orogeny‐driven speciation	4
Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data	4
Phylogenomics and evolutionary diversification of the subfamily Polygonoideae	4
Plant species richness hotspots and related drivers across spatial scales in small Mediterranean islands	4
The importance of the Mexican taxa of Asteraceae in the family phylogeny	4
New genus of Cupressaceae from the Upper Cretaceous of Patagonia (Argentina) fills a gap in the evolution of the ovuliferous complex in the family	4
Using phylogenomics to untangle the taxonomic incongruence of yellow‐flowered Camellia species (Theaceae) in China	4
Plastomic data shed new light on the phylogeny, biogeography, and character evolution of the family Crassulaceae	4
RAD‐seq data provide new insights into biogeography, diversity anomaly, and species delimitation in eastern Asian–North American disjunct clade Benthamidia of Cornus (Cornaceae)	4
First fossil fruits of Elaeocarpus (Elaeocarpaceae) in East Asia: Implications for phytogeography and paleoecology	4
Current and historical factors drive variation of reproductive traits in unisexual mosses in Europe: A case study	4
Characterization of genome‐wide long terminal repeat retrotransposons provide insights into trait evolution of four grapevine species	4
An examination of nectar production in 34 species of Dendrobium indicates that deceptive pollination in the orchids is not popular	4
Phylogenomic insights into the reticulate evolution of Camellia sect. Paracamellia Sealy (Theaceae)	4
First fossil evidence of samaras ofVentilagoGaertn. (Rhamnaceae) from India and its implications	4
Historical biogeography of the Southeast Asian and Malesian tribe Dissochaeteae (Melastomataceae)	4
A biogeographical analysis of Muhlenbergia (Poaceae: Chloridoideae: Cynodonteae: Muhlenbergiinae)	4
Assessing conservation priorities of threatened medicinal plants in China: A new comprehensive phylogenetic scoring system	4
Evolutionary breakdown of distyly to homostyly is accompanied by reductions of floral scent inPrimula oreodoxa	4
Phylogeography and introgression between Pinus kesiya and Pinus yunnanensis in Southeast Asia	4
Phylogenomics and rapid diversification of the genus Eutrema on the Qinghai–Tibet Plateau and adjacent regions	3
A new red alga preserved with possible reproductive bodies from the 518‐million‐year‐old Qingjiang biota	3
Novel classification and biogeography ofLeptolejeunea(Lejeuneaceae, Marchantiophyta) with implications for the origin and evolution of the Asian evergreen broad‐leaved forests	3
The evolutionary history and distribution of cactus germplasm resources, as well as potential domestication under a changing climate	3
Integration of hotspot identification, gap analysis, and niche modeling supports the conservation of Chinese threatened higher plants	3
Geographic patterns and environmental correlates of taxonomic and phylogenetic diversity of aquatic plants in China	3
The ghost of past climate acting on present‐day plant diversity: Lessons from a climate‐based delimitation of the tropical alpine ecosystem	3
The origin and dispersal of Firmiana danxiaensis among isolated specific landscapes	3
Morphology, molecular phylogeny and biogeography revealed two new Pseudo‐nitzschia (Bacillariophyceae) species in Chinese waters	3
Drivers of intraspecific differentiation of an alpine cold‐tolerant herb, Notopterygium oviforme: Roles of isolation by distance and ecological factors	3
Phylogenomics of Puya (Bromeliaceae): Evolution in the Andean slopes and sky island ecosystems	3
Experimental sympatry suggests geographic isolation as an essential reproductive barrier between two sister species ofPedicularis	3
Phylogenetic position of South American Cheilanthes (Cheilanthoideae, Pteridaceae): Advances in the generic circumscription and segregation of the new genus Mineirella	3
Stable persistence of relict populations involved evolutionary shifts of reproductive characters in the genus Tanakaea (Saxifragaceae)	3
Large‐scale diversity reassessment, evolutionary history, and taxonomic revision of the green macroalgae family Udoteaceae (Bryopsidales, Chlorophyta)	3
Perianth evolution and implications for generic delimitation in the eucalypts (Myrtaceae), including the description of the new genus, Blakella	3
The evolution of tachinid pollination in Neotinea ustulata is related to floral cuticular composition and the combined high relative production of (Z)‐11‐C23/C25enes	3
Biogeographic history of Pterocarya (Juglandaceae) inferred from phylogenomic and fossil data	3
Phylogeny of Orthotrichum s.l. and Ulota s.l. (Orthotrichaceae, Bryophyta): Insights into stomatal evolution	3
Male‐biased sex allocation in late‐blooming flowers driven by resource limitation in the clonal perennial Aconitum kusnezoffii (Ranunculaceae)	3
Climatic niche evolution in Smilacaceae (Liliales) drives patterns of species diversification and richness between the Old and New World	3

Deep phylogeographic splits and limited mixing by sea surface currents govern genetic population structure in the mangrove genus Lumnitzera (Combretaceae) across the Indonesian Archipelago	3
Avian skulls represent a diverse ornithuromorph fauna from the Lower Cretaceous Xiagou Formation, Gansu Province, China	3
The associated evolution among the extensive RNA editing, GC‐biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae	3
Mid‐Pleistocene events influenced the current spatial structure of genetic diversity in Scots pine (Pinus sylvestris L.)	3
Herbicides and their potential to disrupt plant–insect chemical communication	3
Heteropogon‐Themeda grasses evolve to occupy either tropical grassland or wetland biomes	3
Exceptionally well‐preserved seed cones of a new fossil species of hemlock, Tsuga weichangensis sp. nov. (Pinaceae), from the Lower Miocene of Hebei Province, North China	2
Molecular phylogenetics of subfamily Urgineoideae (Hyacinthaceae): Toward a coherent generic circumscription informed by molecular, morphological, and distributional data	2
Almost half of the Gymnura van Hasselt, 1823 species are unknown: Phylogeographic inference as scissors for cutting the hidden Gordian knot and clarify their conservation status	2
Chemicals mediate the interaction between plant‐associated fungi and insects	2
Solid‐phase microextraction and cuticular hydrocarbon differences related to reproductive activity in juniper bark borer Semanotus bifasciatus Motschulsky	2
Even more oak species in Mexico? Genetic structure and morphological differentiation support the presence of at least two specific entities within Quercus laeta	2
Deciphering the global phylogeography of a coastal shrub (Scaevola taccada) reveals the influence of multiple forces on contemporary population structure	2
Chloroplast genomes and ribosomal DNA provide insights into divergence and morphological evolution of alpine Tongoloa	2
Selection to attract pollinators and to confuse antagonists specializes fig–pollinator chemical communications	2
Geographic patterns and climatic correlates of deep evolutionary legacies for angiosperm assemblages in China	2
Landscape and evolutionary dynamics of Helitron transposons in plant genomes as well as construction of online database HelDB	2
Exploring morphological evolution in relation to habitat moisture in the moss genus Fissidens using molecular data generated from herbarium specimens	2
Diversification and phylogenetic correlation of functional traits for co‐occurring understory species in the Chinese boreal forest	2
The biogeography of grasses (Poaceae)	2
Functional consequences of temporal reversal of height dimorphism for pollen and seed dispersal in a dioecious plant	2
Divergence in Elymus sibiricus is related to geography and climate oscillation: A new look from pan‐chloroplast genome data	2
Back to the brink: Phylogeography and demographic history of the endangeredTorreya jackii	2
Species delimitation of North American Nyssa species	2
Morphological distinctiveness of Ligularia tongolensis and L. cymbulifera is maintained between habitats despite bidirectional and asymmetrical introgression in multiple hybrid zones	2
Chemical communication between plants and insects	2
Loss of innovative traits underlies multiple origins of Aquilegia ecalcarata	2
Revisiting Xylaria diversity in Southern China: Descriptions of 40 new species	2
Ancient genome of Empress Ashina reveals the Northeast Asian origin of Göktürk Khanate	2
The Bryophyte Phylogeny Group: A revised familial classification system based on plastid phylogenomic data	2
Molecular systematic analysis of the genus Notelaea (Oleaceae): SNPs from high‐density DArT‐sequencing unravel the mystery of the species limits of threatened species of Notelaea	2
Geographic distribution, conservation effectiveness, and gaps for national key protected wild plants in China	2
Two species of the Rhodiola yunnanensis species complex distributed around the Sichuan Basin of China: Speciation in a ring?	2
Extremely high diversity and endemism of chlorotypes in Wikstroemia monnula Hance (Thymelaeaceae) shed light on the effects of habitat heterogeneity on intraspecific differentiation in southeas	2
Parrotiaflower blooming in Miocene rainforest	2
A phylogenetic framework to study desirable traits in the wild relatives of Theobroma cacao (Malvaceae)	2
Reinterpreting the phylogenetic position and taxonomic revision of the genus Pterocyclus (Apiaceae, Apioideae) based on nrITS, complete plastid genome, and morphological evidence	2
Linking South American dry regions by the Gran Chaco: Insights from the evolutionary history and ecological diversification of Gomphrena s.str. (Gomphrenoideae, Amaranthaceae)	2