Molecular Plant

Article	Citations
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data	5390
Crop Phenomics and High-Throughput Phenotyping: Past Decades, Current Challenges, and Future Perspectives	351
Molecular Regulation of Plant Responses to Environmental Temperatures	262
The Reference Genome of Tea Plant and Resequencing of 81 Diverse Accessions Provide Insights into Its Genome Evolution and Adaptation	204
Engineering Broad-Spectrum Bacterial Blight Resistance by Simultaneously Disrupting Variable TALE-Binding Elements of Multiple Susceptibility Genes in Rice	178
PBS3 and EPS1 Complete Salicylic Acid Biosynthesis from Isochorismate in Arabidopsis	154
Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms	141
Whole-Plant Live Imaging of Reactive Oxygen Species	140
Base-Editing-Mediated Artificial Evolution of OsALS1 In Planta to Develop Novel Herbicide-Tolerant Rice Germplasms	136
Plant Prime Editors Enable Precise Gene Editing in Rice Cells	130
Precise Modifications of Both Exogenous and Endogenous Genes in Rice by Prime Editing	128
Hydrogen Sulfide Positively Regulates Abscisic Acid Signaling through Persulfidation of SnRK2.6 in Guard Cells	128
WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat	122
Toward a “Green Revolution” for Soybean	121
Inositol Pyrophosphate InsP8 Acts as an Intracellular Phosphate Signal in Arabidopsis	119
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level	117
Versatile Nucleotides Substitution in Plant Using an Improved Prime Editing System	114
A Molecular Framework for the Control of Adventitious Rooting by TIR1/AFB2-Aux/IAA-Dependent Auxin Signaling in Arabidopsis	107
A Transcriptional Network Promotes Anthocyanin Biosynthesis in Tomato Flesh	107
Cold-Induced CBF–PIF3 Interaction Enhances Freezing Tolerance by Stabilizing the phyB Thermosensor in Arabidopsis	106
Transcriptional landscape of rice roots at the single-cell resolution	104
Plant Nutrition for Human Nutrition: Hints from Rice Research and Future Perspectives	101
Epigenetic Modifications of mRNA and DNA in Plants	100
Resequencing of 145 Landmark Cultivars Reveals Asymmetric Sub-genome Selection and Strong Founder Genotype Effects on Wheat Breeding in China	100
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges	99

Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos	99
High-Resolution Genome-wide Association Study Identifies Genomic Regions and Candidate Genes for Important Agronomic Traits in Wheat	98
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era	97
Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing	96
Two gap-free reference genomes and a global view of the centromere architecture in rice	95
A LysM Receptor Heteromer Mediates Perception of Arbuscular Mycorrhizal Symbiotic Signal in Rice	92
The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research	91
Lipid Metabolism: Critical Roles in Male Fertility and Other Aspects of Reproductive Development in Plants	88
A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement	87
Biosynthesis and Regulation of Salicylic Acid and N-Hydroxypipecolic Acid in Plant Immunity	85
Genome- and transcriptome-wide association studies provide insights into the genetic basis of natural variation of seed oil content in Brassica napus	85
Genome-wide Dissection of Co-selected UV-B Responsive Pathways in the UV-B Adaptation of Qingke	85
Natural Variation in CCD4 Promoter Underpins Species-Specific Evolution of Red Coloration in Citrus Peel	83
A Comprehensive Online Database for Exploring ∼20,000 Public Arabidopsis RNA-Seq Libraries	83
MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle	80
Stripe Rust Effector PstGSRE1 Disrupts Nuclear Localization of ROS-Promoting Transcription Factor TaLOL2 to Defeat ROS-Induced Defense in Wheat	80
BZR1 Family Transcription Factors Function Redundantly and Indispensably in BR Signaling but Exhibit BRI1-Independent Function in Regulating Anther Development in Arabidopsis	79
A Brassica miRNA Regulates Plant Growth and Immunity through Distinct Modes of Action	78
Plant cytochrome P450 plasticity and evolution	77
Toxic metals and metalloids: Uptake, transport, detoxification, phytoremediation, and crop improvement for safer food	77
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53–OsBZR1 Complex to Determine FC1 Expression in Rice Tillering	74
The RALF1–FERONIA Complex Phosphorylates eIF4E1 to Promote Protein Synthesis and Polar Root Hair Growth	74
A Strigolactone Biosynthesis Gene Contributed to the Green Revolution in Rice	72
Redundant CAMTA Transcription Factors Negatively Regulate the Biosynthesis of Salicylic Acid and N-Hydroxypipecolic Acid by Modulating the Expression of SARD1 and CBP60g	70
bHLH121 Functions as a Direct Link that Facilitates the Activation of FIT by bHLH IVc Transcription Factors for Maintaining Fe Homeostasis in Arabidopsis	69
A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis	68
Plant Immune Mechanisms: From Reductionistic to Holistic Points of View	68
Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signals to control polyadenylation site choice in liquid-like nuclear bodies	67
Highly efficient heritable genome editing in wheat using an RNA virus and bypassing tissue culture	65
The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber	64
The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons in Driving Genome Size Evolution	64
Blue Light-Triggered Chemical Reactions Underlie Phosphate Deficiency-Induced Inhibition of Root Elongation of Arabidopsis Seedlings Grown in Petri Dishes	64
Protein Quality Control in Plant Organelles: Current Progress and Future Perspectives	64
Phylotranscriptomics in Cucurbitaceae Reveal Multiple Whole-Genome Duplications and Key Morphological and Molecular Innovations	64
Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes	64
A Domestication-Associated Gene GmPRR3b Regulates the Circadian Clock and Flowering Time in Soybean	63
HY5-HDA9 Module Transcriptionally Regulates Plant Autophagy in Response to Light-to-Dark Conversion and Nitrogen Starvation	62
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae	61
More Transporters, More Substrates: The Arabidopsis Major Facilitator Superfamily Revisited	61
PHYTOCHROME-INTERACTING FACTORS Interact with the ABA Receptors PYL8 and PYL9 to Orchestrate ABA Signaling in Darkness	60
Light Perception: A Matter of Time	60
The Soil-Borne Identity and Microbiome-Assisted Agriculture: Looking Back to the Future	59
LORELEI-LIKE GPI-ANCHORED PROTEINS 2/3 Regulate Pollen Tube Growth as Chaperones and Coreceptors for ANXUR/BUPS Receptor Kinases in Arabidopsis	59
Transcriptional activation and phosphorylation of OsCNGC9 confer enhanced chilling tolerance in rice	59
Coordinated Transcriptional Regulation by the UV-B Photoreceptor and Multiple Transcription Factors for Plant UV-B Responses	59
The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants	59
Nematode-Encoded RALF Peptide Mimics Facilitate Parasitism of Plants through the FERONIA Receptor Kinase	58
HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing	57
The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis	57
Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity	57

CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis	56
Bacterial Effectors Induce Oligomerization of Immune Receptor ZAR1 In Vivo	56
FHY3 and FAR1 Integrate Light Signals with the miR156-SPL Module-Mediated Aging Pathway to Regulate Arabidopsis Flowering	54
Efficient Gene Targeting in Maize Using Inducible CRISPR-Cas9 and Marker-free Donor Template	54
Counteraction of ABA-Mediated Inhibition of Seed Germination and Seedling Establishment by ABA Signaling Terminator in Arabidopsis	54
Lipidomic Analysis Reveals the Importance of GIPCs in Arabidopsis Leaf Extracellular Vesicles	53
Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements	53
CRISPR-Mediated Engineering across the Central Dogma in Plant Biology for Basic Research and Crop Improvement	53
ζ-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid	53
Phosphorylation of LTF1, an MYB Transcription Factor in Populus, Acts as a Sensory Switch Regulating Lignin Biosynthesis in Wood Cells	52
YODA-HSP90 Module Regulates Phosphorylation-Dependent Inactivation of SPEECHLESS to Control Stomatal Development under Acute Heat Stress in Arabidopsis	52
High-efficiency and multiplex adenine base editing in plants using new TadA variants	51
Rheostatic Control of ABA Signaling through HOS15-Mediated OST1 Degradation	51
Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome	51
A GmNINa-miR172c-NNC1 Regulatory Network Coordinates the Nodulation and Autoregulation of Nodulation Pathways in Soybean	50
The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold	50
Hybrid speciation via inheritance of alternate alleles of parental isolating genes	50
Creation and judicious application of a wheat resistance gene atlas	50
Histone Deacetylase HDA9 and WRKY53 Transcription Factor Are Mutual Antagonists in Regulation of Plant Stress Response	49
Extensive Inter-plant Protein Transfer between Cuscuta Parasites and Their Host Plants	49
Zinc in plants: Integrating homeostasis and biofortification	49
Phenylpropanoid Derivatives Are Essential Components of Sporopollenin in Vascular Plants	49
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity	49
Pho-view of Auxin: Reversible Protein Phosphorylation in Auxin Biosynthesis, Transport and Signaling	49
Wound-Induced Shoot-to-Root Relocation of JA-Ile Precursors Coordinates Arabidopsis Growth	49
Nucleocytoplasmic Trafficking of the Arabidopsis WD40 Repeat Protein XIW1 Regulates ABI5 Stability and Abscisic Acid Responses	48
Hydrogen sulfide-linked persulfidation of ABI4 controls ABA responses through the transactivation of MAPKKK18 in Arabidopsis	48
Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex	47
Chromosome-Level Reference Genome and Population Genomic Analysis Provide Insights into the Evolution and Improvement of Domesticated Mulberry (Morus alba)	47
The landscape of gene–CDS–haplotype diversity in rice: Properties, population organization, footprints of domestication and breeding, and implications for genetic improvement	47
MPK14-mediated auxin signaling controls lateral root development via ERF13-regulated very-long-chain fatty acid biosynthesis	46
Control of Plant Growth and Defense by Photoreceptors: From Mechanisms to Opportunities in Agriculture	46
A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice	46
The GW2-WG1-OsbZIP47 pathway controls grain size and weight in rice	46
Genome editing mediated by SpCas9 variants with broad non-canonical PAM compatibility in plants	46
Large-Scale Discovery of Non-conventional Peptides in Maize and Arabidopsis through an Integrated Peptidogenomic Pipeline	46
Harnessing Knowledge from Maize and Rice Domestication for New Crop Breeding	46
Variation in cis-regulation of a NAC transcription factor contributes to drought tolerance in wheat	46
The INO80 chromatin remodeling complex promotes thermomorphogenesis by connecting H2A.Z eviction and active transcription in Arabidopsis	45
Molecular Basis of Disease Resistance and Perspectives on Breeding Strategies for Resistance Improvement in Crops	44
Thermal Reversion of Plant Phytochromes	44
Cell wall β-1,4-galactan regulated by the BPC1/BPC2-GALS1 module aggravates salt sensitivity in Arabidopsis thaliana	44
Plant adaptation to low phosphorus availability: Core signaling, crosstalks, and applied implications	44
The Features and Regulation of Co-transcriptional Splicing in Arabidopsis	43
Type-II Metacaspases Mediate the Processing of Plant Elicitor Peptides in Arabidopsis	43
Primary carbohydrate metabolism genes participate in heat-stress memory at the shoot apical meristem of Arabidopsis thaliana	43
YR36/WKS1-Mediated Phosphorylation of PsbO, an Extrinsic Member of Photosystem II, Inhibits Photosynthesis and Confers Stripe Rust Resistance in Wheat	43
Mobilizing Crop Biodiversity	43
Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C4 Plant-like High Catalytic Activity	43
Phytosphinganine Affects Plasmodesmata Permeability via Facilitating PDLP5-Stimulated Callose Accumulation in Arabidopsis	42
Innovations in Agriculture and Food Supply in Response to the COVID-19 Pandemic	42
Unraveling the 3D Genome Architecture in Plants: Present and Future	42
RGF1-RGI1, a Peptide-Receptor Complex, Regulates Arabidopsis Root Meristem Development via a MAPK Signaling Cascade	41
Mycorrhizal symbiosis modulates the rhizosphere microbiota to promote rhizobia–legume symbiosis	41
A transceptor–channel complex couples nitrate sensing to calcium signaling in Arabidopsis	41
TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants	41
The receptor-like cytoplasmic kinase RIPK regulates broad-spectrum ROS signaling in multiple layers of plant immune system	41
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes	41
Targeted mutagenesis of POLYAMINE OXIDASE 5 that negatively regulates mesocotyl elongation enables the generation of direct-seeding rice with improved grain yield	40
Phytophthora Effectors Modulate Genome-wide Alternative Splicing of Host mRNAs to Reprogram Plant Immunity	40
The YDA-MKK4/MKK5-MPK3/MPK6 Cascade Functions Downstream of the RGF1-RGI Ligand–Receptor Pair in Regulating Mitotic Activity in Root Apical Meristem	40
An angiosperm NLR Atlas reveals that NLR gene reduction is associated with ecological specialization and signal transduction component deletion	40
A PIF7-CONSTANS-Centered Molecular Regulatory Network Underlying Shade-Accelerated Flowering	40
Nitric oxide regulation of plant metabolism	39
Glycolytic Shunts Replenish the Calvin–Benson–Bassham Cycle as Anaplerotic Reactions in Cyanobacteria	39
An integrated framework reinstating the environmental dimension for GWAS and genomic selection in crops	39
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding	39
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions	39
DELLA and EDS1 Form a Feedback Regulatory Module to Fine-Tune Plant Growth–Defense Tradeoff in Arabidopsis	39
A Synthetic Photorespiratory Shortcut Enhances Photosynthesis to Boost Biomass and Grain Yield in Rice	38
Cloning and functional characterization of Rht8, a “Green Revolution” replacement gene in wheat	38
Orphan Crops and their Wild Relatives in the Genomic Era	37
Arabidopsis ECAP Is a New Adaptor Protein that Connects JAZ Repressors with the TPR2 Co-repressor to Suppress Jasmonate-Responsive Anthocyanin Accumulation	37
GSK3-mediated stress signaling inhibits legume–rhizobium symbiosis by phosphorylating GmNSP1 in soybean	37
GIGANTEA Shapes the Photoperiodic Rhythms of Thermomorphogenic Growth in Arabidopsis	37
ETR1 Integrates Response to Ethylene and Cytokinins into a Single Multistep Phosphorelay Pathway to Control Root Growth	37
Genome Editing Enables Next-Generation Hybrid Seed Production Technology	36
Enhanced Vitamin C Production Mediated by an ABA-Induced PTP-like Nucleotidase Improves Plant Drought Tolerance in Arabidopsis and Maize	36
N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles	36
An alternative, zeaxanthin epoxidase-independent abscisic acid biosynthetic pathway in plants	36

Glycosylation of N-hydroxy-pipecolic acid equilibrates between systemic acquired resistance response and plant growth	36
The Genomes of the Allohexaploid Echinochloa crus-galli and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation	36
Photooligomerization Determines Photosensitivity and Photoreactivity of Plant Cryptochromes	36
Parallel selection of distinct Tof5 alleles drove the adaptation of cultivated and wild soybean to high latitudes	36
GmCRY1s modulate gibberellin metabolism to regulate soybean shade avoidance in response to reduced blue light	36
The LEAFY floral regulator displays pioneer transcription factor properties	36
Normal Structure and Function of Endothecium Chloroplasts Maintained by ZmMs33-Mediated Lipid Biosynthesis in Tapetal Cells Are Critical for Anther Development in Maize	35
A compressed variance component mixed model for detecting QTNs and QTN-by-environment and QTN-by-QTN interactions in genome-wide association studies	35
ITPK1 is an InsP6/ADP phosphotransferase that controls phosphate signaling in Arabidopsis	35
Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution	35
Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes	34
Nuclear Localized O-Fucosyltransferase SPY Facilitates PRR5 Proteolysis to Fine-Tune the Pace of Arabidopsis Circadian Clock	34
Chromosome-level genome of Himalayan yew provides insights into the origin and evolution of the paclitaxel biosynthetic pathway	34
Nutrient–hormone relations: Driving root plasticity in plants	34
mTERF5 Acts as a Transcriptional Pausing Factor to Positively Regulate Transcription of Chloroplast psbEFLJ	34
ORHis, a Natural Variant of OR, Specifically Interacts with Plastid Division Factor ARC3 to Regulate Chromoplast Number and Carotenoid Accumulation	33
Folate Metabolism Interferes with Plant Immunity through 1C Methionine Synthase-Directed Genome-wide DNA Methylation Enhancement	33
Nitrogen-Use Divergence Between Indica and Japonica Rice: Variation at Nitrate Assimilation	33
Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus	33
A natural variation in Ribonuclease H-like gene underlies Rht8 to confer “Green Revolution” trait in wheat	33
The blue light receptor CRY1 interacts with GID1 and DELLA proteins to repress GA signaling during photomorphogenesis in Arabidopsis	33
ESCRT-I Component VPS23A Sustains Salt Tolerance by Strengthening the SOS Module in Arabidopsis	32
Unraveling a genetic roadmap for improved taste in the domesticated apple	32
Persulfidation-induced structural change in SnRK2.6 establishes intramolecular interaction between phosphorylation and persulfidation	32
Global Co-transcriptional Splicing in Arabidopsis and the Correlation with Splicing Regulation in Mature RNAs	32
Decreasing nitrogen assimilation under drought stress by suppressing DST-mediated activation of Nitrate Reductase 1.2 in rice	32
Toward Precision Genome Editing in Crop Plants	32
A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis	31
The Ghd7 transcription factor represses ARE1 expression to enhance nitrogen utilization and grain yield in rice	31
The RING E3 ligase CLG1 targets GS3 for degradation via the endosome pathway to determine grain size in rice	31
Bph30 confers resistance to brown planthopper by fortifying sclerenchyma in rice leaf sheaths	31
Major episodes of horizontal gene transfer drove the evolution of land plants	31
PlantscRNAdb: A database for plant single-cell RNA analysis	31
Rice metabolic regulatory network spanning the entire life cycle	30
Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction	30
Using Interactome Big Data to Crack Genetic Mysteries and Enhance Future Crop Breeding	30
Regulation of the stability and ABA import activity of NRT1.2/NPF4.6 by CEPR2-mediated phosphorylation in Arabidopsis	30
A transcription factor STOP1-centered pathway coordinates ammonium and phosphate acquisition in Arabidopsis	30
A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA Polymerase IV for Degradation during Viral Pathogenesis in Rice	30
Arabidopsis CHLOROPHYLLASE 1 protects young leaves from long-term photodamage by facilitating FtsH-mediated D1 degradation in photosystem II repair	30
An inferred functional impact map of genetic variants in rice	30
Development of a widely targeted volatilomics method for profiling volatilomes in plants	30
Activation of Mitochondrial orf355 Gene Expression by a Nuclear-Encoded DREB Transcription Factor Causes Cytoplasmic Male Sterility in Maize	30
Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice	30
WheatGmap: a comprehensive platform for wheat gene mapping and genomic studies	29
Control of Bird Feeding Behavior by Tannin1 through Modulating the Biosynthesis of Polyphenols and Fatty Acid-Derived Volatiles in Sorghum	29
Pandemics of People and Plants: Which Is the Greater Threat to Food Security?	29
The miR166–SlHB15A regulatory module controls ovule development and parthenocarpic fruit set under adverse temperatures in tomato	29
Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	29
From Green Super Rice to green agriculture: Reaping the promise of functional genomics research	29
Epigenetics: Potentials and Challenges in Crop Breeding	29