Molecular Plant

Article	Citations
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data	6976
Molecular Regulation of Plant Responses to Environmental Temperatures	343
The Reference Genome of Tea Plant and Resequencing of 81 Diverse Accessions Provide Insights into Its Genome Evolution and Adaptation	250
Toward a “Green Revolution” for Soybean	168
WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat	166
Base-Editing-Mediated Artificial Evolution of OsALS1 In Planta to Develop Novel Herbicide-Tolerant Rice Germplasms	159
Hydrogen Sulfide Positively Regulates Abscisic Acid Signaling through Persulfidation of SnRK2.6 in Guard Cells	151
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level	149
Precise Modifications of Both Exogenous and Endogenous Genes in Rice by Prime Editing	148
Plant Prime Editors Enable Precise Gene Editing in Rice Cells	144
Two gap-free reference genomes and a global view of the centromere architecture in rice	135
Toxic metals and metalloids: Uptake, transport, detoxification, phytoremediation, and crop improvement for safer food	133
Versatile Nucleotides Substitution in Plant Using an Improved Prime Editing System	131
Resequencing of 145 Landmark Cultivars Reveals Asymmetric Sub-genome Selection and Strong Founder Genotype Effects on Wheat Breeding in China	130
High-Resolution Genome-wide Association Study Identifies Genomic Regions and Candidate Genes for Important Agronomic Traits in Wheat	128
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era	127
Plant Nutrition for Human Nutrition: Hints from Rice Research and Future Perspectives	127
Transcriptional landscape of rice roots at the single-cell resolution	126
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges	126
Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing	124
Cold-Induced CBF–PIF3 Interaction Enhances Freezing Tolerance by Stabilizing the phyB Thermosensor in Arabidopsis	124
Plant cytochrome P450 plasticity and evolution	120
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining	117
Lipid Metabolism: Critical Roles in Male Fertility and Other Aspects of Reproductive Development in Plants	117
The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research	116

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle	110
A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement	109
Genome- and transcriptome-wide association studies provide insights into the genetic basis of natural variation of seed oil content in Brassica napus	108
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes	106
A Comprehensive Online Database for Exploring ∼20,000 Public Arabidopsis RNA-Seq Libraries	101
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53–OsBZR1 Complex to Determine FC1 Expression in Rice Tillering	92
Transcriptional activation and phosphorylation of OsCNGC9 confer enhanced chilling tolerance in rice	91
Phylotranscriptomics in Cucurbitaceae Reveal Multiple Whole-Genome Duplications and Key Morphological and Molecular Innovations	90
A Strigolactone Biosynthesis Gene Contributed to the Green Revolution in Rice	89
A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis	88
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae	88
The RALF1–FERONIA Complex Phosphorylates eIF4E1 to Promote Protein Synthesis and Polar Root Hair Growth	86
Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signals to control polyadenylation site choice in liquid-like nuclear bodies	86
Highly efficient heritable genome editing in wheat using an RNA virus and bypassing tissue culture	85
Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome	83
A Domestication-Associated Gene GmPRR3b Regulates the Circadian Clock and Flowering Time in Soybean	83
Plant Immune Mechanisms: From Reductionistic to Holistic Points of View	81
Zinc in plants: Integrating homeostasis and biofortification	81
The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber	79
bHLH121 Functions as a Direct Link that Facilitates the Activation of FIT by bHLH IVc Transcription Factors for Maintaining Fe Homeostasis in Arabidopsis	79
Variation in cis-regulation of a NAC transcription factor contributes to drought tolerance in wheat	78
The Soil-Borne Identity and Microbiome-Assisted Agriculture: Looking Back to the Future	78
Protein Quality Control in Plant Organelles: Current Progress and Future Perspectives	77
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding	76
The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons in Driving Genome Size Evolution	76
CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis	75
Coordinated Transcriptional Regulation by the UV-B Photoreceptor and Multiple Transcription Factors for Plant UV-B Responses	74
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity	74
High-efficiency and multiplex adenine base editing in plants using new TadA variants	71
ζ-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid	70
Lipidomic Analysis Reveals the Importance of GIPCs in Arabidopsis Leaf Extracellular Vesicles	69
Plant adaptation to low phosphorus availability: Core signaling, crosstalks, and applied implications	69
The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold	69
The GW2-WG1-OsbZIP47 pathway controls grain size and weight in rice	68
Hydrogen sulfide-linked persulfidation of ABI4 controls ABA responses through the transactivation of MAPKKK18 in Arabidopsis	68
CRISPR-Mediated Engineering across the Central Dogma in Plant Biology for Basic Research and Crop Improvement	67
Nematode-Encoded RALF Peptide Mimics Facilitate Parasitism of Plants through the FERONIA Receptor Kinase	67
Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction	66
Creation and judicious application of a wheat resistance gene atlas	65
Hybrid speciation via inheritance of alternate alleles of parental isolating genes	65
The receptor-like cytoplasmic kinase RIPK regulates broad-spectrum ROS signaling in multiple layers of plant immune system	65
Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements	64
Counteraction of ABA-Mediated Inhibition of Seed Germination and Seedling Establishment by ABA Signaling Terminator in Arabidopsis	63
Phenylpropanoid Derivatives Are Essential Components of Sporopollenin in Vascular Plants	63
Nitric oxide regulation of plant metabolism	62
YODA-HSP90 Module Regulates Phosphorylation-Dependent Inactivation of SPEECHLESS to Control Stomatal Development under Acute Heat Stress in Arabidopsis	62
A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice	62
Control of Plant Growth and Defense by Photoreceptors: From Mechanisms to Opportunities in Agriculture	61
Bacterial Effectors Induce Oligomerization of Immune Receptor ZAR1 In Vivo	61
HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing	61

Histone Deacetylase HDA9 and WRKY53 Transcription Factor Are Mutual Antagonists in Regulation of Plant Stress Response	61
Molecular Basis of Disease Resistance and Perspectives on Breeding Strategies for Resistance Improvement in Crops	59
Efficient Gene Targeting in Maize Using Inducible CRISPR-Cas9 and Marker-free Donor Template	59
Chromosome-Level Reference Genome and Population Genomic Analysis Provide Insights into the Evolution and Improvement of Domesticated Mulberry (Morus alba)	59
The INO80 chromatin remodeling complex promotes thermomorphogenesis by connecting H2A.Z eviction and active transcription in Arabidopsis	58
Primary carbohydrate metabolism genes participate in heat-stress memory at the shoot apical meristem of Arabidopsis thaliana	58
A transceptor–channel complex couples nitrate sensing to calcium signaling in Arabidopsis	58
The landscape of gene–CDS–haplotype diversity in rice: Properties, population organization, footprints of domestication and breeding, and implications for genetic improvement	58
Extensive Inter-plant Protein Transfer between Cuscuta Parasites and Their Host Plants	57
An angiosperm NLR Atlas reveals that NLR gene reduction is associated with ecological specialization and signal transduction component deletion	57
Large-Scale Discovery of Non-conventional Peptides in Maize and Arabidopsis through an Integrated Peptidogenomic Pipeline	57
Nutrient–hormone relations: Driving root plasticity in plants	57
Mycorrhizal symbiosis modulates the rhizosphere microbiota to promote rhizobia–legume symbiosis	56
Harnessing Knowledge from Maize and Rice Domestication for New Crop Breeding	56
An integrated framework reinstating the environmental dimension for GWAS and genomic selection in crops	55
Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex	55
A compressed variance component mixed model for detecting QTNs and QTN-by-environment and QTN-by-QTN interactions in genome-wide association studies	55
Pho-view of Auxin: Reversible Protein Phosphorylation in Auxin Biosynthesis, Transport and Signaling	55
Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes	54
MPK14-mediated auxin signaling controls lateral root development via ERF13-regulated very-long-chain fatty acid biosynthesis	54
An alternative, zeaxanthin epoxidase-independent abscisic acid biosynthetic pathway in plants	53
Targeted mutagenesis of POLYAMINE OXIDASE 5 that negatively regulates mesocotyl elongation enables the generation of direct-seeding rice with improved grain yield	53
Metabolomics-centered mining of plant metabolic diversity and function: Past decade and future perspectives	53
Cell wall β-1,4-galactan regulated by the BPC1/BPC2-GALS1 module aggravates salt sensitivity in Arabidopsis thaliana	53
N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles	52
Genome editing mediated by SpCas9 variants with broad non-canonical PAM compatibility in plants	52
Major episodes of horizontal gene transfer drove the evolution of land plants	52
GmCRY1s modulate gibberellin metabolism to regulate soybean shade avoidance in response to reduced blue light	51
The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice	50
Mobilizing Crop Biodiversity	50
Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution	50
Innovations in Agriculture and Food Supply in Response to the COVID-19 Pandemic	49
Orphan Crops and their Wild Relatives in the Genomic Era	49
Bph30 confers resistance to brown planthopper by fortifying sclerenchyma in rice leaf sheaths	49
Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes	49
A natural variation in Ribonuclease H-like gene underlies Rht8 to confer “Green Revolution” trait in wheat	49
An inferred functional impact map of genetic variants in rice	49
Development of a widely targeted volatilomics method for profiling volatilomes in plants	48
Phytophthora Effectors Modulate Genome-wide Alternative Splicing of Host mRNAs to Reprogram Plant Immunity	48
Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C4 Plant-like High Catalytic Activity	48
PlantscRNAdb: A database for plant single-cell RNA analysis	48
Unraveling the 3D Genome Architecture in Plants: Present and Future	48
ITPK1 is an InsP6/ADP phosphotransferase that controls phosphate signaling in Arabidopsis	48
The Genomes of the Allohexaploid Echinochloa crus-galli and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation	48
Cloning and functional characterization of Rht8, a “Green Revolution” replacement gene in wheat	48
Parallel selection of distinct Tof5 alleles drove the adaptation of cultivated and wild soybean to high latitudes	47
The LEAFY floral regulator displays pioneer transcription factor properties	47
A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis	47
Rice metabolic regulatory network spanning the entire life cycle	47
The YDA-MKK4/MKK5-MPK3/MPK6 Cascade Functions Downstream of the RGF1-RGI Ligand–Receptor Pair in Regulating Mitotic Activity in Root Apical Meristem	47
RGF1-RGI1, a Peptide-Receptor Complex, Regulates Arabidopsis Root Meristem Development via a MAPK Signaling Cascade	46
Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204	46
Chromosome-level genome of Himalayan yew provides insights into the origin and evolution of the paclitaxel biosynthetic pathway	46
A Synthetic Photorespiratory Shortcut Enhances Photosynthesis to Boost Biomass and Grain Yield in Rice	46
Unraveling a genetic roadmap for improved taste in the domesticated apple	45
Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield	45
Enhanced Vitamin C Production Mediated by an ABA-Induced PTP-like Nucleotidase Improves Plant Drought Tolerance in Arabidopsis and Maize	45
TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants	45
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions	45
GSK3-mediated stress signaling inhibits legume–rhizobium symbiosis by phosphorylating GmNSP1 in soybean	45
From Green Super Rice to green agriculture: Reaping the promise of functional genomics research	45
Wheat breeding history reveals synergistic selection of pleiotropic genomic sites for plant architecture and grain yield	45
Arabidopsis CHLOROPHYLLASE 1 protects young leaves from long-term photodamage by facilitating FtsH-mediated D1 degradation in photosystem II repair	44
Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation	43
Glycosylation of N-hydroxy-pipecolic acid equilibrates between systemic acquired resistance response and plant growth	43
Genome Editing Enables Next-Generation Hybrid Seed Production Technology	42
Coordination of plant growth and abiotic stress responses by tryptophan synthase β subunit 1 through modulation of tryptophan and ABA homeostasis in Arabidopsis	42
Persulfidation-induced structural change in SnRK2.6 establishes intramolecular interaction between phosphorylation and persulfidation	42
A transcription factor STOP1-centered pathway coordinates ammonium and phosphate acquisition in Arabidopsis	42
A reciprocal inhibitory module for Pi and iron signaling	42
Decreasing nitrogen assimilation under drought stress by suppressing DST-mediated activation of Nitrate Reductase 1.2 in rice	42
Normal Structure and Function of Endothecium Chloroplasts Maintained by ZmMs33-Mediated Lipid Biosynthesis in Tapetal Cells Are Critical for Anther Development in Maize	42
The RING E3 ligase CLG1 targets GS3 for degradation via the endosome pathway to determine grain size in rice	41
The vernalization-induced long non-coding RNA VAS functions with the transcription factor TaRF2b to promote TaVRN1 expression for flowering in hexaploid wheat	41
Citrus Pan-Genome to Breeding Database (CPBD): A comprehensive genome database for citrus breeding	41
The blue light receptor CRY1 interacts with GID1 and DELLA proteins to repress GA signaling during photomorphogenesis in Arabidopsis	41
Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	40
Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus	40
Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice	40
Genomic insights into the fast growth of paulownias and the formation of Paulownia witches' broom	39

CLE14 functions as a “brake signal” to suppress age-dependent and stress-induced leaf senescence by promoting JUB1-mediated ROS scavenging in Arabidopsis	39
Pandemics of People and Plants: Which Is the Greater Threat to Food Security?	39
A reactive oxygen species burst causes haploid induction in maize	39
A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root	39
Regulation of the stability and ABA import activity of NRT1.2/NPF4.6 by CEPR2-mediated phosphorylation in Arabidopsis	38
The miR166–SlHB15A regulatory module controls ovule development and parthenocarpic fruit set under adverse temperatures in tomato	37
ESCRT-I Component VPS23A Sustains Salt Tolerance by Strengthening the SOS Module in Arabidopsis	37
Toward Precision Genome Editing in Crop Plants	36
The Ghd7 transcription factor represses ARE1 expression to enhance nitrogen utilization and grain yield in rice	36
Bract suppression regulated by the miR156/529-SPLs-NL1-PLA1 module is required for the transition from vegetative to reproductive branching in rice	35
A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA Polymerase IV for Degradation during Viral Pathogenesis in Rice	35
WheatGmap: a comprehensive platform for wheat gene mapping and genomic studies	35
ORHis, a Natural Variant of OR, Specifically Interacts with Plastid Division Factor ARC3 to Regulate Chromoplast Number and Carotenoid Accumulation	35
IIIVmrMLM: The R and C++ tools associated with 3VmrMLM, a comprehensive GWAS method for dissecting quantitative traits	35
Enhancing the light reactions of photosynthesis: Strategies, controversies, and perspectives	35
Activation of Mitochondrial orf355 Gene Expression by a Nuclear-Encoded DREB Transcription Factor Causes Cytoplasmic Male Sterility in Maize	34
Dynamic changes of phosphatidylinositol and phosphatidylinositol 4-phosphate levels modulate H+-ATPase and Na+/H+ antiporter activities to maintain ion homeostasis in Arabidopsis under salt stress	34
Verticillium dahliae secretory effector PevD1 induces leaf senescence by promoting ORE1-mediated ethylene biosynthesis	34
Using Interactome Big Data to Crack Genetic Mysteries and Enhance Future Crop Breeding	34
A near-complete assembly of an Arabidopsis thaliana genome	34
Identification of Naturally Occurring Polyamines as Root-Knot Nematode Attractants	34
Wheat leaf rust resistance gene Lr13 is a specific Ne2 allele for hybrid necrosis	34
PhieCBEs: Plant High-Efficiency Cytidine Base Editors with Expanded Target Range	34
Genome architecture and tetrasomic inheritance of autotetraploid potato	34
A virus-derived siRNA activates plant immunity by interfering with ROS scavenging	33
Pyramiding favorable alleles in an elite wheat variety in one generation by CRISPR-Cas9-mediated multiplex gene editing	33
A cell wall-localized NLR confers resistance to Soybean mosaic virus by recognizing viral-encoded cylindrical inclusion protein	33
Hetero-trans-β-Glucanase Produces Cellulose–Xyloglucan Covalent Bonds in the Cell Walls of Structural Plant Tissues and Is Stimulated by Expansin	33
Redox sensor QSOX1 regulates plant immunity by targeting GSNOR to modulate ROS generation	33
A bacterial effector protein uncovers a plant metabolic pathway involved in tolerance to bacterial wilt disease	32
miR395-regulated sulfate metabolism exploits pathogen sensitivity to sulfate to boost immunity in rice	32
Dynamic spatial reorganization of BSK1 complexes in the plasma membrane underpins signal-specific activation for growth and immunity	32
Ectopic expression of VRT-A2 underlies the origin of Triticum polonicum and Triticum petropavlovskyi with long outer glumes and grains	32
Transcriptional Regulation of Lipid Catabolism during Seedling Establishment	32
Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects	31
Tanned or Sunburned: How Excessive Light Triggers Plant Cell Death	31
Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice	31
Tonoplast-associated calcium signaling regulates manganese homeostasis in Arabidopsis	31
Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume	31
The RppC-AvrRppC NLR-effector interaction mediates the resistance to southern corn rust in maize	31
PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress	30
Importers Drive Leaf-to-Leaf Jasmonic Acid Transmission in Wound-Induced Systemic Immunity	30
High-efficiency plastome base editing in rice with TAL cytosine deaminase	29
Breeding with dominant genic male-sterility genes to boost crop grain yield in the post-heterosis utilization era	29
Regulation of Leaf Longevity by DML3-Mediated DNA Demethylation	29
Genome-wide identification of agronomically important genes in outcrossing crops using OutcrossSeq	29
DNA demethylases remodel DNA methylation in rice gametes and zygote and are required for reproduction	29
Molecular basis underlying rice tiller angle: Current progress and future perspectives	29
Optimized prime editing efficiently generates glyphosate-resistant rice plants carrying homozygous TAP-IVS mutation in EPSPS	28
High-temperature wheat leaf rust resistance gene Lr13 exhibits pleiotropic effects on hybrid necrosis	28
Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis	28
The IBI1 Receptor of β-Aminobutyric Acid Interacts with VOZ Transcription Factors to Regulate Abscisic Acid Signaling and Callose-Associated Defense	28
Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis	28
A teosinte-derived allele of a MYB transcription repressor confers multiple disease resistance in maize	28
Engineering broad-spectrum resistance to bacterial blight by CRISPR-Cas9-mediated precise homology directed repair in rice	28