Molecular Plant

Article	Citations
Temperature-dependent regulation of seed dormancy	1905
From plastids to the cytosol: Redefining boundaries for provitamin A biofortification in plants	317
SCOOP10 and SCOOP12 peptides act through MIK2 receptor-like kinase to antagonistically regulate Arabidopsis leaf senescence	276
Structural basis of RLP activation by a pathogen glycoside hydrolase	275
Breaking the interspecific reproductive barriers in Brassicaceae	233
Long-read sequencing (method of the year 2022): The way forward for plant omics research	228
Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly	214
Evolutionarily conserved mechanosensor PIEZO in land plants	197
“Je t'aime moi non plus": A love-hate relationship between iron and phosphate	194
CRISPR-Cas-based plant genome engineering goes viral	175
Plant triterpenoid saponins function as susceptibility factors to promote the pathogenicity of Botrytis cinerea	158
An endophytic fungus interacts with the defensin-like protein OsCAL1 to regulate cadmium allocation in rice	155
Identification and biosynthesis of plant papanridins, a group of novel oligomeric flavonoids	153
Temperature regulation of CLAVATA3 arabinosylation	146
Toward haplotype studies in polyploid plants to assist breeding	146
Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice	143
Mitigating growth-stress tradeoffs via elevated TOR signaling in rice	141
Vacuolar H+-ATPase and BZR1 form a feedback loop to regulate the homeostasis of BR signaling in Arabidopsis	141
The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice	137
A new oxidative pathway of nitric oxide production from oximes in plants	126
A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice	125
Genomic insights into the genetic basis of cotton breeding in China	124
Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons	122
A telomere-to-telomere gap-free assembly of soybean genome	115
Chloroplast immunity: A cornerstone of plant defense	115

Efficient and multiplex gene upregulation in plants through CRISPR-Cas-mediated knockin of enhancers	113
Rice metabolic regulatory network spanning the entire life cycle	111
Alternative splicing of OsNPR3 promoted by the bacterial TAL effectors-targeted splicing regulator OsRBP11 antagonizes OsNPR1 function and enhances disease susceptibility in rice	107
Woody plant cell walls: Fundamentals and utilization	107
Nucleocytoplasmic trafficking during immunity	104
Global wild rice germplasm resources conservation alliance: World Wild-Rice Wiring	104
Mirids secrete a TOPLESS targeting protein to enhance JA-mediated defense and gossypol accumulation for antagonizing cotton bollworms on cotton plants	103
The HB40-JUB1 transcriptional regulatory network controls gibberellin homeostasis in Arabidopsis	103
The CropGPT project: Call for a global, coordinated effort in precision design breeding driven by AI using biological big data	101
Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses	101
A cryptic inhibitor of cytokinin phosphorelay controls rice grain size	100
Plant and animal positive-sense single-stranded RNA viruses encode small proteins important for viral infection in their negative-sense strand	97
SIZ1-mediated SUMOylation of CPSF100 promotes plant thermomorphogenesis by controlling alternative polyadenylation	95
A FLASH pipeline for arrayed CRISPR library construction and the gene function discovery of rice receptor-like kinases	92
Thermomemory in shoot apical meristem: Regulation of carbohydrate metabolism and stem cell identity	91
Salicylic acid inhibits gibberellin signaling through receptor interactions	91
Population genomic analysis reveals domestication of cultivated rye from weedy rye	90
How ignoring market-informed crop varietal development fuels food price volatility	90
Complexes and complexities: INO80 takes center stage	89
A new class of receptors for plant G-proteins	88
PEP7 acts as a peptide ligand for the receptor kinase SIRK1 to regulate aquaporin-mediated water influx and lateral root growth	87
The nucleolus as a genomic safe harbor for strong gene expression in Nannochloropsis oceanica	86
Wheat adaptation to environmental stresses under climate change: Molecular basis and genetic improvement	83
Mitophagy: From the dark into the spotlight	82
Too SHY 2 repress	81
Super graph-based pan-genome: Bringing rice functional genomic study into a new dawn	81
GRP7 phase separation as an interpreter of temperature cues	81
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining	81
Manipulation of photosensory and circadian signaling restricts phenotypic plasticity in response to changing environmental conditions in Arabidopsis	79
The protein–protein interaction landscape of transcription factors during gynoecium development in Arabidopsis	79
Making connections with cell surface auxin signaling	79
An epic war between an oomycete pathogen and plants	79
Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato	76
On the evolution and genetic diversity of the bread wheat D genome	76
Zinc in plants: Integrating homeostasis and biofortification	75
The dual-targeted transcription factor BAI1 orchestrates nuclear and plastid gene transcription in land plants	75
The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees	75
PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress	73
Potatome: Harnessing natural variation of potatoes	73
Arabidopsis SYP121 acts as an ROP2 effector in the regulation of root hair tip growth	72
Adenosine monophosphate enhances callus regeneration competence for de novo plant organogenesis	72
Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes	71
Finding my way: The role of dirigent proteins in lignin assembly	70
Plant-specific casein kinases phosphorylate and stabilize SMXL6/7/8 to suppress strigolactone signaling and promote shoot branching	70
Coordinated regulation of RNA metabolism and silencing by ABA signaling in plant abiotic stress responses	70
TMK: A crucial piece of the acid growth puzzle	69
Uncover the mystery of pleiotropic effects of PROG1 during rice domestication	68
QT–GWAS: A novel method for unveiling biosynthetic loci affecting qualitative metabolic traits	68
pH sensing in plants	66
International research initiative on genomics-guided sugarcane breeding	66

Engineering crop resistance by manipulating disease susceptibility genes	66
Ancestral genome reconstruction for studies of the green lineage	66
Decoding the senses: A new player in plant–virus dynamics unveiled	65
Plant cytochrome P450 plasticity and evolution	65
Reprogrammable design of DELLA as a strategy to mitigate alkaline–heat stress for sustainable agriculture	63
A k-mer-based pangenome approach for cataloging seed-storage-protein genes in wheat to facilitate genotype-to-phenotype prediction and improvement of end-use quality	63
FERONIA signaling maintains cell wall integrity during brassinosteroid-induced cell expansion in Arabidopsis	62
A viral movement protein targets host catalases for 26S proteasome-mediated degradation to facilitate viral infection and aphid transmission in wheat	62
Back to wild relatives for future breeding through super-pangenome	60
The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA	60
Differentiation trajectories and biofunctions of symbiotic and un-symbiotic fate cells in root nodules of Medicago truncatula	60
Small holes, big impact: Stomata in plant–pathogen–climate epic trifecta	58
Arsenite provides a selective signal that coordinates arsenate uptake and detoxification through the regulation of PHR1 stability in Arabidopsis	58
Pathogen-induced methylglyoxal negatively regulates rice bacterial blight resistance by inhibiting OsCDR1 protease activity	57
The transcription factor MYB44 suppresses starch synthesis to negatively regulate grain weight and yield in wheat and rice	57
The Dof transcription factor COG1 acts as a key regulator of plant biomass by promoting photosynthesis and starch accumulation	57
Elucidation and de novo reconstitution of glyceollin biosynthesis	56
RAF22, ABI1 and OST1 form a dynamic interactive network that optimizes plant growth and responses to drought stress in Arabidopsis	56
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes	55
Improving maize seed protein content and nitrogen-use efficiency by a teosinte asparagine synthetase	55
Wheat-RegNet: An encyclopedia of common wheat hierarchical regulatory networks	54
The power of chromosome-scale, haplotype-resolved genomes	54
Development of a widely targeted volatilomics method for profiling volatilomes in plants	54
HDT2-mediated lysine deacetylation promotes phytochrome A degradation during photomorphogenesis in Arabidopsis	54
A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis	54
Smart Breeding Platform: A web-based tool for high-throughput population genetics, phenomics, and genomic selection	54
SH3P2, an SH3 domain-containing protein that interacts with both Pib and AvrPib, suppresses effector-triggered, Pib-mediated immunity in rice	52
9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory	52
Wheat2035: Integrating pan-omics and advanced biotechnology for future wheat design	52
A cell wall-localized NLR confers resistance to Soybean mosaic virus by recognizing viral-encoded cylindrical inclusion protein	52
An MCIA-like complex is required for mitochondrial complex I assembly and seed development in maize	51
FERONIA-mediated TIR1/AFB2 oxidation stimulates auxin signaling in Arabidopsis	51
The supercomplex formation between the chloroplast NADH dehydrogenase-like complex and photosystem I	51
Streamline unsupervised machine learning to survey and graph indel-based haplotypes from pan-genomes	50
A chromosome-level genome assembly reveals that a bipartite gene cluster formed via an inverted duplication controls monoterpenoid biosynthesis in Schizonepeta tenuifolia	49
OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice	49
Blue revolution for food security under carbon neutrality: A case from the water-saving and drought-resistance rice	49
Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination	49
AlphaFold-guided redesign of a plant pectin methylesterase inhibitor for broad-spectrum disease resistance	49
Regulatory dynamics of the higher-plant PSI–LHCI supercomplex during state transitions	48
Calcium-dependent activation of CPK12 facilitates its cytoplasm-to-nucleus translocation to potentiate plant hypoxia sensing by phosphorylating ERF-VII transcription factors	48
Structural insights into a plant-conserved DHFR-TS reveal a selective herbicide target	47
Nitric oxide regulation of plant metabolism	47
Establishment and functions of the Casparian strip	46
Gene editing produces CoQ10 rice	46
Understanding source–sink interactions: Progress in model plants and translational research to crops	46
Four plasma membrane-localized MGR transporters mediate xylem Mg2+ loading for root-to-shoot Mg2+ translocation in Arabidopsis	46
Endosperm ontogeny through the lens of epigenetics	46
The cartography of plant immunity: Proximity labeling puts a novel SGT1–NSL1 regulatory module on the map	46
A “protector” model for membrane trafficking-regulated and NLR-mediated plant immunity	46
Gene duplication drove the loss of awn in sorghum	46
Histone H4K8hib modification promotes gene expression and regulates rice immunity	45
Systematic identification of wheat spike developmental regulators by integrated multi-omics, transcriptional network, GWAS, and genetic analyses	45
Jazzin’ up nodules: The groovy role of jasmonic acid during nodulation	45
A top HAT: A maize mutant hypersusceptible to Agrobacterium transformation	45
Rise of the ethylene biosynthesis machinery from the Cβ-S lyase	45
Cultivating potential: Harnessing plant stem cells for agricultural crop improvement	45
WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat	45
IIIVmrMLM: The R and C++ tools associated with 3VmrMLM, a comprehensive GWAS method for dissecting quantitative traits	45
Molecular mechanism of Verticillium dahliae-induced leaf senescence	44
OsPRMT6a-mediated arginine methylation of OsJAZ1 regulates jasmonate signaling and spikelet development in rice	44
Darwin’s orchid: Plant–pollinator coevolution, chemical ecology, and genomic insights into convergent evolution of floral scent biosynthesis	44
Asymmetric brassinosteroid signaling and biosynthesis during symmetric cell divisions	44
Volatilome-based GWAS identifies OsWRKY19 and OsNAC021 as key regulators of rice aroma	43
Activation of stress-response genes by retrograde signaling-mediated destabilization of nuclear importin IMPα-9 and its interactor TPR2	43
Verticillium dahliae secretory effector PevD1 induces leaf senescence by promoting ORE1-mediated ethylene biosynthesis	43
A new phase of treasure hunting in plant genebanks	43
Steroidal scaffold decorations in Solanum alkaloid biosynthesis	43
AraENCODE: A comprehensive epigenomic database of Arabidopsis thaliana	43
Mixing and matching SMXL proteins to fine-tune strigolactone responses	41
Development and maintenance of the ligular region of maize leaves	41
Strigolactone-gibberellin crosstalk mediated by a distant silencer fine-tunes plant height in upland cotton	41
CONSTANS alters the circadian clock in Arabidopsis thaliana	41
Specialized metabolites as versatile tools in shaping plant–microbe associations	40
Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution	40
Genetic and molecular exploration of maize environmental stress resilience: Toward sustainable agriculture	40
Phase separation of the nuclear pore complex facilitates selective nuclear transport to regulate plant defense against pathogen and pest invasion	40
Low phosphorus promotes NSP1–NSP2 heterodimerization to enhance strigolactone biosynthesis and regulate shoot and root architecture in rice	39
Protein phase separation of plant nuclear pore complex	39
The RALF1-FERONIA complex interacts with and activates TOR signaling in response to low nutrients	39

Nitrate confers rice adaptation to high ammonium by suppressing its uptake but promoting its assimilation	39
The BCM1-EGY1 module balances chlorophyll biosynthesis and breakdown to confer chlorophyll homeostasis in land plants	39
Botanical timekeepers: Deciphering evolutionary relationships in plants	39
From the T2T cotton genome to a tripartite regulatory module governing embryo folding	39
Two complete telomere-to-telomere genome assemblies of Medicago reveal the landscape and evolution of its centromeres	39
Control of H2S synthesis by the monomer–oligomer transition of OsCBSX3 for modulating rice growth-immunity balance	39
Unraveling the sorghum domestication	38
Root bacteria fine-tune rice tillering through phytohormone interference and mimicry	38
GEFormer: A genotype-environment interaction-based genomic prediction method that integrates the gating multilayer perceptron and linear attention mechanisms	38
Underwater survival: Calcium signaling keeps plants afloat	38
Regulation of jasmonate signaling by reversible acetylation of TOPLESS in Arabidopsis	38
The winners of Rising Stars in Plant Sciences 2024	37
Perenniality: From model plants to applications in agriculture	37
NAC1 goes TOPLESS to manage cortex proliferation	37
Breaking the spatial restriction of pluripotency acquisition by environmental stimuli	37
WD40-protein-mediated crosstalk among three epigenetic marks regulates chromatin states and yield in rice	36
Distinctive and complementary roles of E2F transcription factors during plant replication stress responses	36
Nitrogen–iron interaction as an emerging factor influencing crop productivity and nutrient use efficiency	36
Insects manipulate plant immunity via a cross-kingdom small RNA effector	36
Heat stress-induced decapping of WUSCHEL mRNA enhances stem cell thermotolerance in Arabidopsis	36
A war on the cell wall	35
A molecular framework underlying low-nitrogen-induced early leaf senescence in Arabidopsis thaliana	35
Multifaceted roles of phosphorylation-mediated regulation of heterotrimeric G proteins in plant cellular signaling	35
Rewilding staple crops for the lost halophytism: Toward sustainability and profitability of agricultural production systems	35
Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome	35
A telomere-to-telomere genome assembly of the cultivated peanut	35
(Not) an elementary question: How to mobilize the iron in the wall?	34
Epitranscriptome engineering in crop improvement	34
Mobilizing Triticeae diversity from gene banks to farmer’s field	33
The ferroxidases LPR1 and LPR2 control iron translocation in the xylem of Arabidopsis plants	33
Epigenetic reprogramming by glucose-TOR signaling controls plant development	32
Toward the next step to the New Green Revolution	32
Polycomb and trithorax: Their yin-yang dynamics in plants	32
Cell-type-specific transcriptomics reveals that root hairs and endodermal barriers play important roles in beneficial plant-rhizobacterium interactions	31
A karyopherin constrains nuclear activity of the NLR protein SNC1 and is essential to prevent autoimmunity in Arabidopsis	31
A step forward in breeding for ratooning ability in rice	31
Exploring maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites	31
Chloroplast state transitions modulate nuclear genome stability via cytokinin signaling in Arabidopsis	31
Arabidopsis WRKY1 promotes monocarpic senescence by integrative regulation of flowering, leaf senescence, and nitrogen remobilization	30
RIN enhances plant disease resistance via root exudate-mediated assembly of disease-suppressive rhizosphere microbiota	30
SUMOylation-modified Pelota-Hbs1 RNA surveillance complex restricts the infection of potyvirids in plants	30
Lack of ethylene does not affect reproductive success and synergid cell death in Arabidopsis	30
Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204	30
A complete reference genome assembly for foxtail millet and Setaria-db, a comprehensive database for Setaria	30
Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice	30
The tip of the iceberg: ROP2 directly interacts with SYP121 to regulate root-hair polarization, elongation, and exocytosis	29
A SPX domain vacuolar transporter links phosphate sensing to homeostasis in Arabidopsis	29
Dampened nuclear localization of SnRK1 by brassinosteroid signaling inhibits stomatal development in Arabidopsis	29
An unprecedented one-arrow-two-hawks strategy achieves high yield with early flowering in rice	29
SoyOmics: A deeply integrated database on soybean multi-omics	29
DNA damage: Driver of methylome reshaping?	28
Cherish your weeds	28
Cytokinin signaling connects the chloroplast function with nuclear genome stability	28
Moving magnesium	28
Improving the haploidization toolbox: Maternal factors take the stage	28
RLKdb: A comprehensively curated database of plant receptor-like kinase families	28
Improving rice photosynthesis and yield through trehalose 6-phosphate signaling	28
Genetic insights into adaptation of alfalfa	27
Plant PAQR-like sensors activate heterotrimeric G proteins to confer resistance against multiple pathogens	27
Why 2022 is a revolutionary year for potato genomics	27
Creating one-line hybrid crops by synthetic apomixis	27
Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin’s orchid	27
Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty	27
Increasing seed lint fiber density for promoting cotton yield: Opportunities and challenges	27
The genome of the recretohalophyte Limonium bicolor provides insights into salt gland development and salinity adaptation during terrestrial evolution	26
A highly efficient and environmentally friendly strategy to obtain transgene-free genome-edited progeny in flowering plants	26
Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction	26
A circular single-stranded DNA mycovirus infects plants and confers broad-spectrum fungal resistance	26
A gap-free complete genome assembly of oat and OatOmics, a multi-omics database	25
Cellulose synthesis in land plants	25
Arsenite provides a selective signal that coordinates arsenate uptake and detoxification through the regulation of PHR1 stability in Arabidopsis	25
Phosphoinositides: Emerging players in plant salinity stress tolerance	25
Sailing in complex nutrient signaling networks: Where I am, where to go, and how to go?	25
Legume-specific SnRK1 promotes malate supply to bacteroids for symbiotic nitrogen fixation	25
BAI1: A plant transcription factor governing nuclear and plastid gene expression	25
COG1 – A master transcription factor regulating photosynthesis	25
Dt1 inhibits SWEET-mediated sucrose transport to regulate photoperiod-dependent seed weight in soybean	25
Structural insights into ABA receptor agonists reveal critical features to optimize and design a broad-spectrum ABA signaling activator	25
Structural basis of auxin recognition and transport by the plant influx carrier AUX1	25
Launching, perceiving, and diminishing of airborne signals	25
Inferring the genome-wide history of grasses	25
Plant breeding highlights master genes in major regulatory pathways	24
Sensing H2O2 for defense in plants	24
A teosinte-derived allele of a MYB transcription repressor confers multiple disease resistance in maize	24
Speed vernalization to accelerate generation advance in winter cereal crops	24
The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids	24
A useful toolbox for the detection of SCF E3 ligase activity	24
Phosphorus lights up the trade-off between growth and immunity	24
Graph-based pangenome provides insights into structural variations and genetic basis of metabolic traits in potato	24
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity	23
On breakthroughs and limits: Resolving structural fine-tuning of photosynthetic supercomplexes	23
Co-evolved plant and blast fungus ascorbate oxidases orchestrate the redox state of host apoplast to modulate rice immunity	23
The molecular basis of heat stress responses in plants	23
A viral protein orchestrates rice ethylene signaling to coordinate viral infection and insect vector-mediated transmission	23
The long non-coding RNA CARMA directs sucrose-responsive osmoregulation	23