Journal of Integrative Plant Biology

Papers
(The median citation count of Journal of Integrative Plant Biology is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions691
Protein kinases in plant responses to drought, salt, and cold stress332
The plant cell wall: Biosynthesis, construction, and functions245
Mitogen‐activated protein kinase cascades in plant signaling223
Potassium and phosphorus transport and signaling in plants206
The root microbiome: Community assembly and its contributions to plant fitness160
Hydrogen sulfide, a signaling molecule in plant stress responses130
Root developmental responses to phosphorus nutrition127
Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae125
Molecular mechanisms for the photoperiodic regulation of flowering in soybean123
Mechanisms underlying legume–rhizobium symbioses117
Auxin signaling: Research advances over the past 30 years112
Ethylene signaling in rice and Arabidopsis: New regulators and mechanisms111
Ca2+ signaling in plant responses to abiotic stresses101
The calcium‐dependent protein kinase ZmCDPK7 functions in heat‐stress tolerance in maize85
The direct targets of CBFs: In cold stress response and beyond81
Genome editing for plant research and crop improvement75
An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics75
Phyllosphere microbiota: Community dynamics and its interaction with plant hosts74
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation68
Molecular mechanisms underlying the toxicity and detoxification of trace metals and metalloids in plants66
Increasing yield potential through manipulating of an ARE1 ortholog related to nitrogen use efficiency in wheat by CRISPR/Cas965
Plant abiotic stress: New insights into the factors that activate and modulate plant responses64
A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency63
Transcriptional regulation of fleshy fruit texture61
Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus59
Effective methods for isolation and purification of extracellular vesicles from plants58
Plant plasma membrane‐resident receptors: Surveillance for infections and coordination for growth and development58
Arabidopsis U‐box E3 ubiquitin ligase PUB11 negatively regulates drought tolerance by degrading the receptor‐like protein kinases LRR1 and KIN758
Chromatin remodeling factors regulate environmental stress responses in plants54
Ethylene and salicylic acid synergistically accelerate leaf senescence in Arabidopsis54
Phylogenomics and the flowering plant tree of life50
Advances in structure and function of auxin response factor in plants49
Salicylic acid and ethylene coordinately promote leaf senescence49
From genes to networks: The genetic control of leaf development49
The origin of Wxla provides new insights into the improvement of grain quality in rice49
ERF1 delays flowering through direct inhibition of FLOWERING LOCUS T expression in Arabidopsis48
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in 48
Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice48
Rice seed storage proteins: Biosynthetic pathways and the effects of environmental factors47
Functional assembly of root‐associated microbial consortia improves nutrient efficiency and yield in soybean47
Efficient and genotype independent maize transformation using pollen transfected by DNA‐coated magnetic nanoparticles47
Versatile effectors of phytopathogenic fungi target host immunity46
Creation of aromatic maize by CRISPR/Cas45
SIZ1 negatively regulates aluminum resistance by mediating the STOP1–ALMT1 pathway in Arabidopsis44
Abscisic acid signaling negatively regulates nitrate uptake via phosphorylation of NRT1.1 by SnRK2s in Arabidopsis43
FT5a interferes with the Dt1‐AP1 feedback loop to control flowering time and shoot determinacy in soybean43
Chromatin‐remodeling complexes: Conserved and plant‐specific subunits in Arabidopsis43
Maize endosperm development43
The Class III peroxidase gene OsPrx30, transcriptionally modulated by the AT‐hook protein OsATH1, mediates rice bacterial blight‐induced ROS accumulation42
Establishment of a dmp based maternal haploid induction system for polyploid Brassica napus and Nicotiana tabacum40
Crop phenotyping in a context of global change: What to measure and how to do it39
Drought stress and plant ecotype drive microbiome recruitment in switchgrass rhizosheath39
Integration of light and temperature signaling pathways in plants38
The NPR1‐WRKY46‐WRKY6 signaling cascade mediates probenazole/salicylic acid‐elicited leaf senescence in Arabidopsis thaliana38
Engineering broad‐spectrum disease‐resistant rice by editing multiple susceptibility genes37
Highly efficient, genotype‐independent transformation and gene editing in watermelon (Citrullus lanatus) using a chimeric ClGRF4‐GIF1 gene37
The lncRNA39896–miR166b–HDZs module affects tomato resistance to Phytophthora infestans37
Fig fruit ripening is regulated by the interaction between ethylene and abscisic acid36
Large chromosomal segment deletions by CRISPR/LbCpf1‐mediated multiplex gene editing in soybean36
A recent retrotransposon insertion of J caused E6 locus facilitating soybean adaptation into low latitude36
Loss of Gn1a/OsCKX2 confers heavy‐panicle rice with excellent lodging resistance36
Circadian clock in plants: Linking timing to fitness36
Recent progression and future perspectives in cotton genomic breeding35
The battle of crops against drought: Genetic dissection and improvement35
Efficient generation of homozygous substitutions in rice in one generation utilizing an rABE8e base editor35
The CBP/p300 histone acetyltransferases function as plant‐specific MEDIATOR subunits in Arabidopsis35
WRKY33‐mediated indolic glucosinolate metabolic pathway confers resistance against Alternaria brassicicola in Arabidopsis and Brassica crops35
Comprehensive phylogenetic analyses of Orchidaceae using nuclear genes and evolutionary insights into epiphytism35
Development of an efficient plant dual cytosine and adenine editor34
Regulation of cytoskeleton‐associated protein activities: Linking cellular signals to plant cytoskeletal function34
Salicylic acid biosynthesis is not from phenylalanine in Arabidopsis34
Variations in OsSPL10 confer drought tolerance by directly regulating OsNAC2 expression and ROS production in rice33
Efficient genotype‐independent cotton genetic transformation and genome editing33
Plant base editing and prime editing: The current status and future perspectives33
The MIEL1‐ABI5/MYB30 regulatory module fine tunes abscisic acid signaling during seed germination33
Salicylic acid promotes quiescent center cell division through ROS accumulation and down‐regulation of PLT1, PLT2, and WOX533
Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5′ processing of mitochondrial nad5 messenger RNA and endosperm development33
Plant target of rapamycin signaling network: Complexes, conservations, and specificities32
Structure of plant photosystem I−light harvesting complex I supercomplex at 2.4 Å resolution32
Allele‐aware chromosome‐scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro)32
Shaping polyploid wheat for success: Origins, domestication, and the genetic improvement of agronomic traits32
The jasmonate‐induced bHLH gene SlJIG functions in terpene biosynthesis and resistance to insects and fungus32
MdbHLH3 modulates apple soluble sugar content by activating phosphofructokinase gene expression32
Ethylene‐induced stomatal closure is mediated via MKK1/3–MPK3/6 cascade to EIN2 and EIN332
BioClay™ prolongs RNA interference‐mediated crop protection against Botrytis cinerea31
The miR166 mediated regulatory module controls plant height by regulating gibberellic acid biosynthesis and catabolism in soybean31
Alternative splicing of MaMYB16L regulates starch degradation in banana fruit during ripening31
Water stress resilient cereal crops: Lessons from wild relatives31
RNA silencing: From discovery and elucidation to application and perspectives31
Nitrate transporter NRT1.1 and anion channel SLAH3 form a functional unit to regulate nitrate‐dependent alleviation of ammonium toxicity31
MiR319‐targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice31
Multiplex and optimization of dCas9‐TV‐mediated gene activation in plants30
A unique photosystem I reaction center from a chlorophyll d‐containing cyanobacterium Acaryochloris marina30
CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low‐temperature conditions in rice30
OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4‐OsMAPK6‐OsWRKY53 signaling pathway30
Nicotiana benthamiana LRR‐RLP NbEIX2 mediates the perception of an EIX‐like protein from Verticillium dahliae29
Ustilaginoidea virens modulates lysine 2‐hydroxyisobutyrylation in rice flowers during infection29
Reactive oxygen species: Multidimensional regulators of plant adaptation to abiotic stress and development29
CRISPR/Cas9 gene editing and natural variation analysis demonstrate the potential for HvARE1 in improvement of nitrogen use efficiency in barley29
Here comes the sun: How optimization of photosynthetic light reactions can boost crop yields29
GmPIN1‐mediated auxin asymmetry regulates leaf petiole angle and plant architecture in soybean28
Integrated view of plant metabolic defense with particular focus on chewing herbivores28
Making small molecules in plants: A chassis for synthetic biology‐based production of plant natural products28
The multi‐omics basis of potato heterosis28
GmMs1 encodes a kinesin‐like protein essential for male fertility in soybean (Glycine max L.)28
The transcription factors TLR1 and TLR2 negatively regulate trichome density and artemisinin levels in Artemisia annua27
Mediator tail module subunits MED16 and MED25 differentially regulate abscisic acid signaling in Arabidopsis27
Pathogen‐informed breeding for crop disease resistance27
Dynamic regulation of DNA methylation and histone modifications in response to abiotic stresses in plants27
Balancing selection and wild gene pool contribute to resistance in global rice germplasm against planthopper27
Brassinosteroid signaling positively regulates abscisic acid biosynthesis in response to chilling stress in tomato27
Understandings and future challenges in soybean functional genomics and molecular breeding26
RING finger protein RGLG1 and RGLG2 negatively modulate MAPKKK18 mediated drought stress tolerance in Arabidopsis26
Roles of DEMETER in regulating DNA methylation in vegetative tissues and pathogen resistance26
Phase separation in plants: New insights into cellular compartmentalization26
The Larix kaempferi genome reveals new insights into wood properties26
An in planta haploid induction system in Brassica napus26
Rice SPL10 positively regulates trichome development through expression of HL6 and auxin‐related genes26
The E3 ligase XBAT35 mediates thermoresponsive hypocotyl growth by targeting ELF3 for degradation in Arabidopsis26
The RNA N6‐methyladenosine demethylase ALKBH9B modulates ABA responses in Arabidopsis25
OsEDM2L mediates m6A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation25
Phytochrome B interacts with SWC6 and ARP6 to regulate H2A.Z deposition and photomorphogensis in Arabidopsis25
High non‐photochemical quenching of VPZ transgenic potato plants limits CO2 assimilation under high light conditions and reduces tuber yield under fluctuating light25
A global alfalfa diversity panel reveals genomic selection signatures in Chinese varieties and genomic associations with root development25
Tangeretin inhibits fungal ferroptosis to suppress rice blast25
The alleviation of ammonium toxicity in plants24
Comprehensive identification of lysine 2‐hydroxyisobutyrylated proteins in Ustilaginoidea virens reveals the involvement of lysine 2‐hydroxyisobutyrylation in fungal virulence24
A G‐type lectin receptor‐like kinase regulates the perception of oomycete apoplastic expansin‐like proteins24
HY5‐HDA9 orchestrates the transcription of HsfA2 to modulate salt stress response in Arabidopsis24
A molecular framework for signaling crosstalk between jasmonate and ethylene in anthocyanin biosynthesis, trichome development, and defenses against insect herbivores in Arabidopsis24
Biofortification of iron and zinc in rice and wheat23
A bZIP transcription factor (CiFD) regulates drought‐ and low‐temperature‐induced flowering by alternative splicing in citrus23
Interaction of brassinosteroid and cytokinin promotes ovule initiation and increases seed number per silique in Arabidopsis23
Innovations and stepwise evolution of CBFs/DREB1s and their regulatory networks in angiosperms22
Optimized prime editing efficiently generates heritable mutations in maize22
HY5 regulates light‐responsive transcription of microRNA163 to promote primary root elongation in Arabidopsis seedlings22
GhKNL1 controls fiber elongation and secondary cell wall synthesis by repressing its downstream genes in cotton (Gossypium hirsutum)22
A histone H3K27me3 reader cooperates with a family of PHD finger‐containing proteins to regulate flowering time in Arabidopsis22
Methionine oxidation and reduction of the ethylene signaling component MaEIL9 are involved in banana fruit ripening22
Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe)22
Enhanced production of seed oil with improved fatty acid composition by overexpressing NAD+‐dependent glycerol‐3‐phosphate dehydrogenase in soybean22
Ascorbate peroxidase 1 confers resistance to southern corn leaf blight in maize21
Induction of jasmonic acid biosynthetic genes inhibits Arabidopsis growth in response to low boron21
Primary root and root hair development regulation by OsAUX4 and its participation in the phosphate starvation response21
Benefiting others and self: Production of vitamins in plants21
Spatial phylogenetics of the Chinese angiosperm flora provides insights into endemism and conservation21
Reciprocal regulation between the negative regulator PP2CG1 phosphatase and the positive regulator OST1 kinase confers cold response in Arabidopsis21
The brassinosteroid signaling component SlBZR1 promotes tomato fruit ripening and carotenoid accumulation21
Base editing‐mediated targeted evolution of ACCase for herbicide‐resistant rice mutants21
BAK1 plays contrasting roles in regulating abscisic acid‐induced stomatal closure and abscisic acid‐inhibited primary root growth in Arabidopsis21
Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets20
CmNF‐YB8 affects drought resistance in chrysanthemum by altering stomatal status and leaf cuticle thickness20
Creation of fragrant sorghum by CRISPR/Cas920
Overlapping functions of YDA and MAPKKK3/MAPKKK5 upstream of MPK3/MPK6 in plant immunity and growth/development20
A novel protein complex that regulates active DNA demethylation in Arabidopsis20
Genome‐wide profiling of circular RNAs, alternative splicing, and R‐loops in stem‐differentiating xylem of Populus trichocarpa20
Understanding the regulation of cereal grain filling: The way forward19
GIGANTEA orthologs, E2 members, redundantly determine photoperiodic flowering and yield in soybean19
Origin and evolution of green plants in the light of key evolutionary events19
The ScCas9++ variant expands the CRISPR toolbox for genome editing in plants19
Cowpea NAC1/NAC2 transcription factors improve growth and tolerance to drought and heat in transgenic cowpea through combined activation of photosynthetic and antioxidant mechanisms19
WHIRLY1 recruits the histone deacetylase HDA15 repressing leaf senescence and flowering in Arabidopsis19
Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores19
A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis19
Insights into salvianolic acid B biosynthesis from chromosome‐scale assembly of the Salvia bowleyana genome19
The Phytophthora effector Avh241 interacts with host NDR1‐like proteins to manipulate plant immunity19
Light participates in the auxin‐dependent regulation of plant growth19
The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis19
Designing salt stress‐resilient crops: Current progress and future challenges19
Zinc‐finger protein GmZF351 improves both salt and drought stress tolerance in soybean19
PagGRF12a interacts with PagGIF1b to regulate secondary xylem development through modulating PagXND1a expression in Populus alba × P. glandulosa18
MALE STERILITY 3 encodes a plant homeodomain‐finger protein for male fertility in soybean18
New insights into cell–cell communications during seed development in flowering plants18
ZmMYC2s play important roles in maize responses to simulated herbivory and jasmonate18
ERF4 interacts with and antagonizes TCP15 in regulating endoreduplication and cell growth in Arabidopsis18
Novel Wx alleles generated by base editing for improvement of rice grain quality18
ANNEXIN 8 negatively regulates RPW8.1‐mediated cell death and disease resistance in Arabidopsis18
Quantitative disease resistance: Multifaceted players in plant defense18
Genome‐wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis18
The rice Raf‐like MAPKKK OsILA1 confers broad‐spectrum resistance to bacterial blight by suppressing the OsMAPKK4–OsMAPK6 cascade18
Exploring the diversity of plant proteome17
Regulation of root secondary metabolites by partial root‐associated microbiotas under the shaping of licorice ecotypic differentiation in northwest China17
Agronomical selection on loss‐of‐function of GIGANTEA simultaneously facilitates soybean salt tolerance and early maturity17
A cost‐effective tsCUT&Tag method for profiling transcription factor binding landscape17
PROTEIN S‐ACYL TRANSFERASE 13/16 modulate disease resistance by S‐acylation of the nucleotide binding, leucine‐rich repeat protein R5L1 in Arabidopsis17
Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone17
OpNAC1 transcription factor regulates the biosynthesis of the anticancer drug camptothecin by targeting loganic acid O‐methyltransferase in Ophiorrhiza pumila17
An efficient CRISPR/Cas9 platform for targeted genome editing in rose (Rosa hybrida)17
The RECEPTOR‐LIKE PROTEIN53 immune complex associates with LLG1 to positively regulate plant immunity16
Diversity, structure and function of the coiled‐coil domains of plant NLR immune receptors16
An updated classification for the hyper‐diverse genusCorydalis(Papaveraceae: Fumarioideae) based on phylogenomic and morphological evidence16
Regulation of cytokinin biosynthesis using PtRD26pro‐IPT module improves drought tolerance through PtARR10‐PtYUC4/5‐mediated reactive oxygen species removal inPopulus16
Interplay between ethylene and nitrogen nutrition: How ethylene orchestrates nitrogen responses in plants16
Ribonuclease H‐like gene SMALL GRAIN2 regulates grain size in rice through brassinosteroid signaling pathway16
Assembly dynamics of East Asian subtropical evergreen broadleaved forests: New insights from the dominant Fagaceae trees16
HBI1‐TCP20 interaction positively regulates the CEPs‐mediated systemic nitrate acquisition16
Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean16
MYB106 is a negative regulator and a substrate for CRL3BPM E3 ligase in regulating flowering time in Arabidopsis thaliana16
Plant transfer RNA‐derived fragments: Biogenesis and functions16
Plant‐based, adjuvant‐free, potent multivalent vaccines for avian influenza virus via Lactococcus surface display15
Natural variation in the NAC transcription factor NONRIPENING contributes to melon fruit ripening15
Young Leaf White Stripe encodes a P‐type PPR protein required for chloroplast development15
GmJAZ3 interacts with GmRR18a and GmMYC2a to regulate seed traits in soybean15
High‐quality Fagopyrum esculentum genome provides insights into the flavonoid accumulation among different tissues and self‐incompatibility15
Sdr4 dominates pre‐harvest sprouting and facilitates adaptation to local climatic condition in Asian cultivated rice15
LjaFGD: Lonicera japonica functional genomics database14
OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak14
Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice14
Engineering of triterpene metabolism and overexpression of the lignin biosynthesis gene PAL promotes ginsenoside Rg3 accumulation in ginseng plant chassis14
Growth asymmetry precedes differential auxin response during apical hook initiation in Arabidopsis14
The Puccinia striiformis effector Hasp98 facilitates pathogenicity by blocking the kinase activity of wheat TaMAPK414
TRAF proteins as key regulators of plant development and stress responses14
Genomic convergence underlying high‐altitude adaptation in alpine plants14
ZmGRAS11, transactivated by Opaque2, positively regulates kernel size in maize14
RING‐box proteins regulate leaf senescence and stomatal closure via repression of ABA transporter gene ABCG4014
Three‐dimensional reconstruction and comparison of vacuolar membranes in response to viral infection14
The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING‐H2 gene OsRFPH2‐614
A critical review on natural compounds interacting with the plant plasma membrane H+‐ATPase and their potential as biologicals in agriculture14
DNA methylation dynamics during germline development14
The SlWRKY57‐SlVQ21/SlVQ16 module regulates salt stress in tomato14
GmFtsH25 overexpression increases soybean seed yield by enhancing photosynthesis and photosynthates14
Brassinosteroid signaling regulates phosphate starvation‐induced malate secretion in plants14
The miR157‐SPL‐CNR module acts upstream of bHLH101 to negatively regulate iron deficiency responses in tomato13
The Phytophthora effector Avh94 manipulates host jasmonic acid signaling to promote infection13
Plant virology in the 21st century in China: Recent advances and future directions13
Molecular basis of CONSTANS oligomerization in FLOWERING LOCUS T activation13
Transcription factor GLK1 promotes anthocyanin biosynthesis via an MBW complex‐dependent pathway in Arabidopsis thaliana13
The basic helix‐loop‐helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance13
The safflower MBW complex regulates HYSA accumulation through degradation by the E3 ligase CtBB113
Establishment of an efficient seed fluorescence reporter‐assisted CRISPR/Cas9 gene editing in maize13
DIW1 encoding a clade I PP2C phosphatase negatively regulates drought tolerance by de‐phosphorylating TaSnRK1.1 in wheat13
Rapid improvement of rice eating and cooking quality through gene editing toward glutelin as target13
NF‐YCs modulate histone variant H2A.Z deposition to regulate photomorphogenic growth in Arabidopsis13
Bracelet salt glands of the recretohalophyte Limonium bicolor: Distribution, morphology, and induction12
PagERF81 regulates lignin biosynthesis and xylem cell differentiation in poplar12
PP2A interacts with KATANIN to promote microtubule organization and conical cell morphogenesis12
Circadian rhythms driving a fast‐paced root clock implicate species‐specific regulation in Medicago truncatula12
REVEILLE 7 inhibits the expression of the circadian clock gene EARLY FLOWERING 4 to fine‐tune hypocotyl growth in response to warm temperatures12
Brassinosteroids inhibit miRNA‐mediated translational repression by decreasing AGO1 on the endoplasmic reticulum12
ANAC087 transcription factor positively regulates age‐dependent leaf senescence through modulating the expression of multiple target genes in Arabidopsis12
GhAP1‐D3 positively regulates flowering time and early maturity with no yield and fiber quality penalties in upland cotton12
The pentatricopeptide repeat protein EMB1270 interacts with CFM2 to splice specific group II introns in Arabidopsis chloroplasts11
Egg cell‐secreted aspartic proteases ECS1/2 promote gamete attachment to prioritize the fertilization of egg cells over central cells in Arabidopsis11
Active DNA demethylation in plants: 20 years of discovery and beyond11
Quantitative proteomics reveals redox‐based functional regulation of photosynthesis under fluctuating light in plants11
The role of senescence‐associated gene101 (PagSAG101a) in the regulation of secondary xylem formation in poplar11
Geminiviral C2 proteins inhibit active autophagy to facilitate virus infection by impairing the interaction of ATG7 and ATG811
The Xanthomonas type III effector XopAP prevents stomatal closure by interfering with vacuolar acidification11
AtNSF regulates leaf serration by modulating intracellular trafficking of PIN1 in Arabidopsis thaliana11
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