Journal of Integrative Plant Biology

Papers
(The median citation count of Journal of Integrative Plant Biology is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-06-01 to 2024-06-01.)
ArticleCitations
Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions570
Protein kinases in plant responses to drought, salt, and cold stress292
Melatonin: A master regulator of plant development and stress responses249
The plant cell wall: Biosynthesis, construction, and functions208
Mitogen‐activated protein kinase cascades in plant signaling181
Potassium and phosphorus transport and signaling in plants175
Hydrogen sulfide, a signaling molecule in plant stress responses121
The root microbiome: Community assembly and its contributions to plant fitness118
Molecular mechanisms for the photoperiodic regulation of flowering in soybean111
Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae103
Mechanisms underlying legume–rhizobium symbioses102
Root developmental responses to phosphorus nutrition101
Auxin signaling: Research advances over the past 30 years100
Ethylene signaling in rice and Arabidopsis: New regulators and mechanisms98
Ca2+ signaling in plant responses to abiotic stresses85
B‐box proteins: Pivotal players in light‐mediated development in plants81
Soybean AP1 homologs control flowering time and plant height80
The calcium‐dependent protein kinase ZmCDPK7 functions in heat‐stress tolerance in maize78
The role of light in regulating seed dormancy and germination75
SmMYB2 promotes salvianolic acid biosynthesis in the medicinal herb Salvia miltiorrhiza72
The direct targets of CBFs: In cold stress response and beyond71
Phyllosphere microbiota: Community dynamics and its interaction with plant hosts70
Genome editing for plant research and crop improvement69
An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics63
Plant cell totipotency: Insights into cellular reprogramming63
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation62
A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency59
Integrated metabolo‐transcriptomics and functional characterization reveals that the wheat auxin receptor TIR1 negatively regulates defense against Fusarium graminearum56
Arabidopsis U‐box E3 ubiquitin ligase PUB11 negatively regulates drought tolerance by degrading the receptor‐like protein kinases LRR1 and KIN755
Increasing yield potential through manipulating of an ARE1 ortholog related to nitrogen use efficiency in wheat by CRISPR/Cas955
Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus54
Arabidopsis E3 ligase KEG associates with and ubiquitinates MKK4 and MKK5 to regulate plant immunity54
Plant plasma membrane‐resident receptors: Surveillance for infections and coordination for growth and development54
Plant abiotic stress: New insights into the factors that activate and modulate plant responses53
Co‐regulation of indole glucosinolates and camalexin biosynthesis by CPK5/CPK6 and MPK3/MPK6 signaling pathways51
Ethylene and salicylic acid synergistically accelerate leaf senescence in Arabidopsis50
Transcriptional regulation of fleshy fruit texture50
WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age‐mediated flowering50
Fg12 ribonuclease secretion contributes to Fusarium graminearum virulence and induces plant cell death49
Molecular mechanisms underlying the toxicity and detoxification of trace metals and metalloids in plants48
Effective methods for isolation and purification of extracellular vesicles from plants48
Chromatin remodeling factors regulate environmental stress responses in plants46
Salicylic acid and ethylene coordinately promote leaf senescence45
ERF1 delays flowering through direct inhibition of FLOWERING LOCUS T expression in Arabidopsis44
The origin of Wxla provides new insights into the improvement of grain quality in rice44
Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice44
From genes to networks: The genetic control of leaf development42
Rice seed storage proteins: Biosynthetic pathways and the effects of environmental factors42
Functional assembly of root‐associated microbial consortia improves nutrient efficiency and yield in soybean41
Maize endosperm development40
FT5a interferes with the Dt1‐AP1 feedback loop to control flowering time and shoot determinacy in soybean39
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in 39
Abscisic acid signaling negatively regulates nitrate uptake via phosphorylation of NRT1.1 by SnRK2s in Arabidopsis38
Chromatin‐remodeling complexes: Conserved and plant‐specific subunits in Arabidopsis38
Creation of aromatic maize by CRISPR/Cas38
Efficient and genotype independent maize transformation using pollen transfected by DNA‐coated magnetic nanoparticles38
Phylogenomics and the flowering plant tree of life37
The Class III peroxidase gene OsPrx30, transcriptionally modulated by the AT‐hook protein OsATH1, mediates rice bacterial blight‐induced ROS accumulation37
OsbZIP76 interacts with OsNF‐YBs and regulates endosperm cellularization in rice (Oryza sativa)36
FKF1 F‐box protein promotes flowering in part by negatively regulating DELLA protein stability under long‐day photoperiod in Arabidopsis36
Versatile effectors of phytopathogenic fungi target host immunity36
Profiling of circular RNA N6‐methyladenosine in moso bamboo (Phyllostachys edulis) using nanopore‐based direct RNA sequencing35
SIZ1 negatively regulates aluminum resistance by mediating the STOP1–ALMT1 pathway in Arabidopsis34
SHY2 as a node in the regulation of root meristem development by auxin, brassinosteroids, and cytokinin34
Fig fruit ripening is regulated by the interaction between ethylene and abscisic acid34
The CBP/p300 histone acetyltransferases function as plant‐specific MEDIATOR subunits in Arabidopsis33
Engineering broad‐spectrum disease‐resistant rice by editing multiple susceptibility genes33
A recent retrotransposon insertion of J caused E6 locus facilitating soybean adaptation into low latitude33
The lncRNA39896–miR166b–HDZs module affects tomato resistance to Phytophthora infestans33
Drought stress and plant ecotype drive microbiome recruitment in switchgrass rhizosheath33
Crop phenotyping in a context of global change: What to measure and how to do it33
The NPR1‐WRKY46‐WRKY6 signaling cascade mediates probenazole/salicylic acid‐elicited leaf senescence in Arabidopsis thaliana33
Establishment of a dmp based maternal haploid induction system for polyploid Brassica napus and Nicotiana tabacum32
Large chromosomal segment deletions by CRISPR/LbCpf1‐mediated multiplex gene editing in soybean32
Advances in structure and function of auxin response factor in plants32
Florigen trafficking integrates photoperiod and temperature signals in Arabidopsis32
Efficient generation of homozygous substitutions in rice in one generation utilizing an rABE8e base editor32
Integration of light and temperature signaling pathways in plants31
The MIEL1‐ABI5/MYB30 regulatory module fine tunes abscisic acid signaling during seed germination31
Structure of plant photosystem I−light harvesting complex I supercomplex at 2.4 Å resolution31
Development of an efficient plant dual cytosine and adenine editor31
The battle of crops against drought: Genetic dissection and improvement31
Highly efficient, genotype‐independent transformation and gene editing in watermelon (Citrullus lanatus) using a chimeric ClGRF4‐GIF1 gene30
Regulation of cytoskeleton‐associated protein activities: Linking cellular signals to plant cytoskeletal function30
Salicylic acid promotes quiescent center cell division through ROS accumulation and down‐regulation of PLT1, PLT2, and WOX530
The Arabidopsis phosphatase PP2C49 negatively regulates salt tolerance through inhibition of AtHKT1;130
MdbHLH3 modulates apple soluble sugar content by activating phosphofructokinase gene expression30
Plant target of rapamycin signaling network: Complexes, conservations, and specificities29
The nodulation and nyctinastic leaf movement is orchestrated by clock gene LHY in Medicago truncatula29
Circadian clock in plants: Linking timing to fitness29
WRKY33‐mediated indolic glucosinolate metabolic pathway confers resistance against Alternaria brassicicola in Arabidopsis and Brassica crops29
Induction of γ‐aminobutyric acid plays a positive role to Arabidopsis resistance against Pseudomonas syringae29
Ethylene‐induced stomatal closure is mediated via MKK1/3–MPK3/6 cascade to EIN2 and EIN328
Here comes the sun: How optimization of photosynthetic light reactions can boost crop yields28
Loss of Gn1a/OsCKX2 confers heavy‐panicle rice with excellent lodging resistance28
Allele‐aware chromosome‐scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro)28
ZmSRL5is involved in drought tolerance by maintaining cuticular wax structure in maize28
Plant base editing and prime editing: The current status and future perspectives28
MiR319‐targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice28
Water stress resilient cereal crops: Lessons from wild relatives27
Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5′ processing of mitochondrial nad5 messenger RNA and endosperm development27
CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low‐temperature conditions in rice27
Nicotiana benthamiana LRR‐RLP NbEIX2 mediates the perception of an EIX‐like protein from Verticillium dahliae27
Shaping polyploid wheat for success: Origins, domestication, and the genetic improvement of agronomic traits27
The jasmonate‐induced bHLH gene SlJIG functions in terpene biosynthesis and resistance to insects and fungus27
Targeted mutagenesis in Arabidopsis thaliana using CRISPR‐Cas12b/C2c126
SINAT E3 ligases regulate the stability of the ESCRT component FREE1 in response to iron deficiency in plants26
Ustilaginoidea virens modulates lysine 2‐hydroxyisobutyrylation in rice flowers during infection26
CRISPR/Cas9 gene editing and natural variation analysis demonstrate the potential for HvARE1 in improvement of nitrogen use efficiency in barley26
OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4‐OsMAPK6‐OsWRKY53 signaling pathway26
Phase separation in plants: New insights into cellular compartmentalization26
Multiplex and optimization of dCas9‐TV‐mediated gene activation in plants26
Nitrate transporter NRT1.1 and anion channel SLAH3 form a functional unit to regulate nitrate‐dependent alleviation of ammonium toxicity26
ABNORMAL SHOOT 6 interacts with KATANIN 1 and SHADE AVOIDANCE 4 to promote cortical microtubule severing and ordering in Arabidopsis26
Alternative splicing of MaMYB16L regulates starch degradation in banana fruit during ripening26
The miR166 mediated regulatory module controls plant height by regulating gibberellic acid biosynthesis and catabolism in soybean26
Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice25
Efficient genotype‐independent cotton genetic transformation and genome editing25
Betula platyphylla BpHOX2 transcription factor binds to different cis‐acting elements and confers osmotic tolerance25
Variations in OsSPL10 confer drought tolerance by directly regulating OsNAC2 expression and ROS production in rice25
Roles of DEMETER in regulating DNA methylation in vegetative tissues and pathogen resistance25
Mediator tail module subunits MED16 and MED25 differentially regulate abscisic acid signaling in Arabidopsis25
Balancing selection and wild gene pool contribute to resistance in global rice germplasm against planthopper24
Salicylic acid biosynthesis is not from phenylalanine in Arabidopsis24
Comprehensive identification of lysine 2‐hydroxyisobutyrylated proteins in Ustilaginoidea virens reveals the involvement of lysine 2‐hydroxyisobutyrylation in fungal virulence24
The multi‐omics basis of potato heterosis24
RING finger protein RGLG1 and RGLG2 negatively modulate MAPKKK18 mediated drought stress tolerance in Arabidopsis24
Integrated view of plant metabolic defense with particular focus on chewing herbivores24
RNA silencing: From discovery and elucidation to application and perspectives24
The E3 ligase XBAT35 mediates thermoresponsive hypocotyl growth by targeting ELF3 for degradation in Arabidopsis24
GmMs1 encodes a kinesin‐like protein essential for male fertility in soybean (Glycine max L.)24
Comprehensive phylogenetic analyses of Orchidaceae using nuclear genes and evolutionary insights into epiphytism23
Photobiology: Light signal transduction and photomorphogenesis23
Recent progression and future perspectives in cotton genomic breeding23
Phytochrome B interacts with SWC6 and ARP6 to regulate H2A.Z deposition and photomorphogensis in Arabidopsis23
Pathogen‐informed breeding for crop disease resistance23
A unique photosystem I reaction center from a chlorophyll d‐containing cyanobacterium Acaryochloris marina23
The Larix kaempferi genome reveals new insights into wood properties22
Brassinosteroid signaling positively regulates abscisic acid biosynthesis in response to chilling stress in tomato22
SlSTE1 promotes abscisic acid‐dependent salt stress‐responsive pathways via improving ion homeostasis and reactive oxygen species scavenging in tomato22
Interaction of brassinosteroid and cytokinin promotes ovule initiation and increases seed number per silique in Arabidopsis22
Rice SPL10 positively regulates trichome development through expression of HL6 and auxin‐related genes22
A G‐type lectin receptor‐like kinase regulates the perception of oomycete apoplastic expansin‐like proteins22
GmPIN1‐mediated auxin asymmetry regulates leaf petiole angle and plant architecture in soybean22
BioClay™ prolongs RNA interference‐mediated crop protection against Botrytis cinerea22
An in planta haploid induction system in Brassica napus21
The transcription factors TLR1 and TLR2 negatively regulate trichome density and artemisinin levels in Artemisia annua21
A molecular framework for signaling crosstalk between jasmonate and ethylene in anthocyanin biosynthesis, trichome development, and defenses against insect herbivores in Arabidopsis21
HY5 regulates light‐responsive transcription of microRNA163 to promote primary root elongation in Arabidopsis seedlings20
Dynamic regulation of DNA methylation and histone modifications in response to abiotic stresses in plants20
Enhanced production of seed oil with improved fatty acid composition by overexpressing NAD+‐dependent glycerol‐3‐phosphate dehydrogenase in soybean20
A histone H3K27me3 reader cooperates with a family of PHD finger‐containing proteins to regulate flowering time in Arabidopsis20
Reciprocal regulation between the negative regulator PP2CG1 phosphatase and the positive regulator OST1 kinase confers cold response in Arabidopsis20
Understandings and future challenges in soybean functional genomics and molecular breeding20
A global alfalfa diversity panel reveals genomic selection signatures in Chinese varieties and genomic associations with root development20
BAK1 plays contrasting roles in regulating abscisic acid‐induced stomatal closure and abscisic acid‐inhibited primary root growth in Arabidopsis20
Spatial phylogenetics of the Chinese angiosperm flora provides insights into endemism and conservation19
Tangeretin inhibits fungal ferroptosis to suppress rice blast19
Primary root and root hair development regulation by OsAUX4 and its participation in the phosphate starvation response19
OsEDM2L mediates m6A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation19
Cowpea NAC1/NAC2 transcription factors improve growth and tolerance to drought and heat in transgenic cowpea through combined activation of photosynthetic and antioxidant mechanisms18
GhKNL1 controls fiber elongation and secondary cell wall synthesis by repressing its downstream genes in cotton (Gossypium hirsutum)18
Making small molecules in plants: A chassis for synthetic biology‐based production of plant natural products18
Induction of jasmonic acid biosynthetic genes inhibits Arabidopsis growth in response to low boron18
Plasma membrane H+‐ATPases‐mediated cytosolic proton gradient regulates pollen tube growth18
Biofortification of iron and zinc in rice and wheat18
ANNEXIN 8 negatively regulates RPW8.1‐mediated cell death and disease resistance in Arabidopsis18
Ethylene promotes seed iron storage duringArabidopsisseed maturation via ERF95 transcription factor18
A novel protein complex that regulates active DNA demethylation in Arabidopsis18
The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis18
CmNF‐YB8 affects drought resistance in chrysanthemum by altering stomatal status and leaf cuticle thickness18
MALE STERILITY 3 encodes a plant homeodomain‐finger protein for male fertility in soybean17
Genome‐wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis17
Ascorbate peroxidase 1 confers resistance to southern corn leaf blight in maize17
The ScCas9++ variant expands the CRISPR toolbox for genome editing in plants17
Insights into salvianolic acid B biosynthesis from chromosome‐scale assembly of the Salvia bowleyana genome17
Creation of fragrant sorghum by CRISPR/Cas917
GIGANTEA orthologs, E2 members, redundantly determine photoperiodic flowering and yield in soybean17
Origin and evolution of green plants in the light of key evolutionary events17
Benefiting others and self: Production of vitamins in plants17
Base editing‐mediated targeted evolution of ACCase for herbicide‐resistant rice mutants17
Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores17
Novel Wx alleles generated by base editing for improvement of rice grain quality17
High non‐photochemical quenching of VPZ transgenic potato plants limits CO2 assimilation under high light conditions and reduces tuber yield under fluctuating light16
Plant transfer RNA‐derived fragments: Biogenesis and functions16
Zinc‐finger protein GmZF351 improves both salt and drought stress tolerance in soybean16
Methionine oxidation and reduction of the ethylene signaling component MaEIL9 are involved in banana fruit ripening16
The rice Raf‐like MAPKKK OsILA1 confers broad‐spectrum resistance to bacterial blight by suppressing the OsMAPKK4–OsMAPK6 cascade16
PagGRF12a interacts with PagGIF1b to regulate secondary xylem development through modulating PagXND1a expression in Populus alba × P. glandulosa16
Agronomical selection on loss‐of‐function of GIGANTEA simultaneously facilitates soybean salt tolerance and early maturity16
The Phytophthora effector Avh241 interacts with host NDR1‐like proteins to manipulate plant immunity16
Overlapping functions of YDA and MAPKKK3/MAPKKK5 upstream of MPK3/MPK6 in plant immunity and growth/development16
HY5‐HDA9 orchestrates the transcription of HsfA2 to modulate salt stress response in Arabidopsis16
Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe)15
Ribonuclease H‐like gene SMALL GRAIN2 regulates grain size in rice through brassinosteroid signaling pathway15
The RNA N6‐methyladenosine demethylase ALKBH9B modulates ABA responses in Arabidopsis15
The brassinosteroid signaling component SlBZR1 promotes tomato fruit ripening and carotenoid accumulation15
Diversity, structure and function of the coiled‐coil domains of plant NLR immune receptors15
The Arabidopsis R‐SNARE protein YKT61 is essential for gametophyte development15
A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis15
New insights into cell–cell communications during seed development in flowering plants15
Natural variation in the NAC transcription factor NONRIPENING contributes to melon fruit ripening15
Optimized prime editing efficiently generates heritable mutations in maize15
Genome‐wide profiling of circular RNAs, alternative splicing, and R‐loops in stem‐differentiating xylem of Populus trichocarpa15
The RECEPTOR‐LIKE PROTEIN53 immune complex associates with LLG1 to positively regulate plant immunity14
Innovations and stepwise evolution of CBFs/DREB1s and their regulatory networks in angiosperms14
The C‐terminal 17 amino acids of the photoreceptor UVR8 is involved in the fine‐tuning of UV‐B signaling14
HBI1‐TCP20 interaction positively regulates the CEPs‐mediated systemic nitrate acquisition14
Three‐dimensional reconstruction and comparison of vacuolar membranes in response to viral infection14
A cost‐effective tsCUT&Tag method for profiling transcription factor binding landscape14
ZmGRAS11, transactivated by Opaque2, positively regulates kernel size in maize14
Light participates in the auxin‐dependent regulation of plant growth14
Regulation of cytokinin biosynthesis using PtRD26pro‐IPT module improves drought tolerance through PtARR10‐PtYUC4/5‐mediated reactive oxygen species removal inPopulus14
The alleviation of ammonium toxicity in plants14
A critical review on natural compounds interacting with the plant plasma membrane H+‐ATPase and their potential as biologicals in agriculture14
WHIRLY1 recruits the histone deacetylase HDA15 repressing leaf senescence and flowering in Arabidopsis14
An efficient CRISPR/Cas9 platform for targeted genome editing in rose (Rosa hybrida)14
Immediate transcriptional responses of Arabidopsis leaves to heat shock14
Plant‐based, adjuvant‐free, potent multivalent vaccines for avian influenza virus via Lactococcus surface display13
RING‐box proteins regulate leaf senescence and stomatal closure via repression of ABA transporter gene ABCG4013
LjaFGD: Lonicera japonica functional genomics database13
TRAF proteins as key regulators of plant development and stress responses13
Assembly dynamics of East Asian subtropical evergreen broadleaved forests: New insights from the dominant Fagaceae trees13
NF‐YCs modulate histone variant H2A.Z deposition to regulate photomorphogenic growth in Arabidopsis13
Sdr4 dominates pre‐harvest sprouting and facilitates adaptation to local climatic condition in Asian cultivated rice13
Regulation of root secondary metabolites by partial root‐associated microbiotas under the shaping of licorice ecotypic differentiation in northwest China13
N4‐methylcytidine ribosomal RNA methylation in chloroplasts is crucial for chloroplast function, development, and abscisic acid response in Arabidopsis13
Growth asymmetry precedes differential auxin response during apical hook initiation in Arabidopsis13
Establishment of an efficient seed fluorescence reporter‐assisted CRISPR/Cas9 gene editing in maize13
Exploring the diversity of plant proteome13
Interplay between ethylene and nitrogen nutrition: How ethylene orchestrates nitrogen responses in plants12
Understanding the regulation of cereal grain filling: The way forward12
The miR157‐SPL‐CNR module acts upstream of bHLH101 to negatively regulate iron deficiency responses in tomato12
Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean12
An updated classification for the hyper‐diverse genus Corydalis (Papaveraceae: Fumarioideae) based on phylogenomic and morphological evidence12
The epidermis‐specific cyclin CYCP3;1 is involved in the excess brassinosteroid signaling‐inhibited root meristem cell division12
Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone12
DIW1 encoding a clade I PP2C phosphatase negatively regulates drought tolerance by de‐phosphorylating TaSnRK1.1 in wheat12
PROTEIN S‐ACYL TRANSFERASE 13/16 modulate disease resistance by S‐acylation of the nucleotide binding, leucine‐rich repeat protein R5L1 in Arabidopsis12
MYB106 is a negative regulator and a substrate for CRL3BPM E3 ligase in regulating flowering time in Arabidopsis thaliana12
AtHAP5A regulates iron translocation in iron‐deficient Arabidopsis thaliana12
ERF4 interacts with and antagonizes TCP15 in regulating endoreduplication and cell growth in Arabidopsis12
OpNAC1 transcription factor regulates the biosynthesis of the anticancer drug camptothecin by targeting loganic acid O‐methyltransferase in Ophiorrhiza pumila12
A bZIP transcription factor (CiFD) regulates drought‐ and low‐temperature‐induced flowering by alternative splicing in citrus12
Receptor‐like kinases MDS1 and MDS2 promote SUMM2‐mediated immunity12
Designing salt stress‐resilient crops: Current progress and future challenges12
PP2A interacts with KATANIN to promote microtubule organization and conical cell morphogenesis11
Brassinosteroid signaling regulates phosphate starvation‐induced malate secretion in plants11
The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING‐H2 gene OsRFPH2‐611
Brassinosteroids inhibit miRNA‐mediated translational repression by decreasing AGO1 on the endoplasmic reticulum11
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