OOIR: Observatory of International Research

Papers

(The H4-Index of Genomics Proteomics & Bioinformatics is 32. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data	1022
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products	671
Acknowledgments to Reviewers 2021	333
WheatCENet: A Database for Comparative Co-Expression Networks Analysis of Allohexaploid Wheat and Its Progenitors	245
PHISDetector: A Tool to Detect Diverse In Silico Phage–Host Interaction Signals for Virome Studies	159
PSIA: A Comprehensive Knowledgebase of Plant Self-Incompatibility	157
OBIA: An Open Biomedical Imaging Archive	118
Precision Methylome and in Vivo Methylation Kinetics Characterization of Klebsiella Pneumoniae	110
Dynamic Landscapes of tRNA Transcriptomes and Translatomes in Diverse Mouse Tissues	88
RNase P: Beyond Precursor tRNA Processing	80
AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs	79
New Metabolic Alterations and a Predictive Marker Pipecolic Acid in Sera for Esophageal Squamous Cell Carcinoma	77
Cell-free DNA Fragmentomics Assay to Discriminate the Malignancy of Breast Nodules and Evaluate Treatment Response	75
DeepCAGE: Incorporating Transcription Factors in Genome-Wide Prediction of Chromatin Accessibility	53
Identify Non-mutational p53 Functional Deficiency in Human Cancers	53
SLM2 Is a Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy	53
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals	53
scLink: Inferring Sparse Gene Co-Expression Networks from Single-Cell Expression Data	51
SuperFeat: Quantitative Feature Learning from Single-cell RNA-seq Data Facilitates Drug Repurposing	50
Opportunities and Challenges in Advancing Plant Research with Single-cell Omics	50
Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques	46
The Role of N6-methyladenosine Modification in Gametogenesis and Embryogenesis: Impact on Fertility	45
Integrative Genome-wide Association Meta-analysis of Aortic Aneurysm and Dissection Identifies Five Novel Genes	43
Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins	41
Computational Methods for Single-Cell DNA Methylome Analysis	40

Computational Approaches and Challenges in Spatial Transcriptomics	40
Multi-Omics Data Reveal the Effect of Sodium Butyrate on Gene Expression and Protein Modification in Streptomyces	39
GDBIG: A Pioneering Birth Cohort Genomic Platform Facilitating Intergenerational Genetic Research	38
Gut Microbiome in Colorectal Cancer: Clinical Diagnosis and Treatment	37
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant	35
Application of Microbiome in Forensics	34
Comprehensive Analysis of Ubiquitously Expressed Genes in Humans from a Data-Driven Perspective	32