OOIR: Observatory of International Research

Papers

(The H4-Index of Genomics Proteomics & Bioinformatics is 31. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
Acknowledgments to Reviewers 2021	391
WheatCENet: A Database for Comparative Co-Expression Networks Analysis of Allohexaploid Wheat and Its Progenitors	290
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products	180
Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data	138
PSIA: A Comprehensive Knowledgebase of Plant Self-incompatibility	134
PHISDetector: A Tool to Detect Diverse In Silico Phage–Host Interaction Signals for Virome Studies	92
OBIA: An Open Biomedical Imaging Archive	90
Dynamic Landscapes of tRNA Transcriptomes and Translatomes in Diverse Mouse Tissues	88
AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs	85
RNase P: Beyond Precursor tRNA Processing	83
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals	68
Spatial Transcriptomics Unveils the Blueprint of Mammalian Lung Development	59
Identify Non-mutational p53 Functional Deficiency in Human Cancers	59
Opportunities and Challenges in Advancing Plant Research with Single-cell Omics	58
New Metabolic Alterations and a Predictive Marker Pipecolic Acid in Sera for Esophageal Squamous Cell Carcinoma	57
Whole Genome Sequence Analysis Revealed Novel Subjective Cognitive Decline-associated Genes in 10,763 Chinese	57
Cell-free DNA Fragmentomics Assay to Discriminate the Malignancy of Breast Nodules and Evaluate Treatment Response	55
DeepCAGE: Incorporating Transcription Factors in Genome-Wide Prediction of Chromatin Accessibility	53
Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques	49
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant	49
GDBIG: A Pioneering Birth Cohort Genomic Platform Facilitating Intergenerational Genetic Research	47
Multi-Omics Data Reveal the Effect of Sodium Butyrate on Gene Expression and Protein Modification in Streptomyces	45
Integrative Genome-wide Association Meta-analysis of Aortic Aneurysm and Dissection Identifies Five Novel Genes	44
Computational Approaches and Challenges in Spatial Transcriptomics	42
Computational Methods for Single-Cell DNA Methylome Analysis	42

Application of Microbiome in Forensics	36
SuperFeat: Quantitative Feature Learning from Single-cell RNA-seq Data Facilitates Drug Repurposing	34
Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins	33
The Role of N6-methyladenosine Modification in Gametogenesis and Embryogenesis: Impact on Fertility	33
Precision and Accuracy in Quantitative Measurement of Gene Expression from Single-cell/nuclei RNA Sequencing Data	33
Gut Microbiome in Colorectal Cancer: Clinical Diagnosis and Treatment	32
ncFO: A Comprehensive Resource of Curated and Predicted ncRNAs Associated with Ferroptosis	31