OOIR: Observatory of International Research

Papers

(The H4-Index of Genomics Proteomics & Bioinformatics is 30. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types	677
Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients	496
rMVP: A Memory-Efficient, Visualization-Enhanced, and Parallel-Accelerated Tool for Genome-Wide Association Study	487
GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction	459
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets	208
Direct Comparative Analyses of 10X Genomics Chromium and Smart-Seq2	183
KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences	148
Genome Warehouse: A Public Repository Housing Genome-Scale Data	128
SimplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results	99
High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads	92
The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR	87
Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota are Attributable to Its Key Ingredient Berberine	77
Single-Cell Immune Landscape of Human Recurrent Miscarriage	75
Evaluation of Cell Type Annotation R Packages on Single-Cell RNA-Seq Data	72
Gut Microbiome Alterations in COVID-19	68
Computational Tools and Resources for CRISPR/Cas Genome Editing	58
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms	55
Quantitative Proteomics Using Isobaric Labeling: A Practical Guide	54
Computational Approaches and Challenges in Spatial Transcriptomics	47
Machine Learning for Lung Cancer Diagnosis, Treatment, and Prognosis	45
Computational Screening of Phase-Separating Proteins	39
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa	39
Single-Cell Transcriptomic Analysis Reveals the Cellular Heterogeneity of Mesenchymal Stem Cells	38
SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling	35
CVTree: A Parallel Alignment-Free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes	33

Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson’s Disease — The RESISTA-PD Trial	33
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant	32
Genome Assembly of Alfalfa Cultivar Zhongmu-4 and Identification of SNPs Associated with Agronomic Traits	32
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock	32
A Single-Cell Transcriptome Atlas of Cashmere Goat Hair Follicle Morphogenesis	31