OOIR: Observatory of International Research

Papers

(The H4-Index of Genomics Proteomics & Bioinformatics is 29. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types	471
Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients	403
rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool for Genome-wide Association Study	367
GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction	318
hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets	187
Direct Comparative Analyses of 10X Genomics Chromium and Smart-seq2	154
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets	142
Genome Warehouse: A Public Repository Housing Genome-scale Data	101
KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences	99
mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies	86
The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR	81
High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads	73
simplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results	69
Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to Its Key Ingredient Berberine	68
Single-cell Immune Landscape of Human Recurrent Miscarriage	60
Gut Microbiome Alterations in COVID-19	58
Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data	57
DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery	50
Comparative Genome Analysis of Scutellaria baicalensis and Scutellaria barbata Reveals the Evolution of Active Flavonoid Biosynthesis	47
IRESbase: A Comprehensive Database of Experimentally Validated Internal Ribosome Entry Sites	47
Computational Tools and Resources for CRISPR/Cas Genome Editing	45
m6A Regulates Liver Metabolic Disorders and Hepatogenous Diabetes	44
BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures	44
Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters	39
Computational Screening of Phase-separating Proteins	36

Quantitative Proteomics Using Isobaric Labeling: A Practical Guide	36
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant	35
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa	32
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms	30
iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features	29