OOIR: Observatory of International Research

Papers

(The H4-Index of Genomics Proteomics & Bioinformatics is 31. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data	981
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products	644
Acknowledgments to Reviewers 2021	317
PHISDetector: A Tool to Detect Diverse In Silico Phage–Host Interaction Signals for Virome Studies	231
WheatCENet: A Database for Comparative Co-Expression Networks Analysis of Allohexaploid Wheat and Its Progenitors	155
OBIA: An Open Biomedical Imaging Archive	153
AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs	116
Precision Methylome and in Vivo Methylation Kinetics Characterization of Klebsiella Pneumoniae	97
RNase P: Beyond Precursor tRNA Processing	88
Dynamic Landscapes of tRNA Transcriptomes and Translatomes in Diverse Mouse Tissues	79
New Metabolic Alterations and a Predictive Marker Pipecolic Acid in Sera for Esophageal Squamous Cell Carcinoma	75
scLink: Inferring Sparse Gene Co-Expression Networks from Single-Cell Expression Data	75
Cell-free DNA Fragmentomics Assay to Discriminate the Malignancy of Breast Nodules and Evaluate Treatment Response	71
SLM2 Is a Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy	51
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals	51
Identify Non-mutational p53 Functional Deficiency in Human Cancers	51
Opportunities and Challenges in Advancing Plant Research with Single-cell Omics	49
DeepCAGE: Incorporating Transcription Factors in Genome-Wide Prediction of Chromatin Accessibility	49
Multi-Omics Data Reveal the Effect of Sodium Butyrate on Gene Expression and Protein Modification in Streptomyces	46
SuperFeat: Quantitative Feature Learning from Single-cell RNA-seq Data Facilitates Drug Repurposing	45
The Role of N6-methyladenosine Modification in Gametogenesis and Embryogenesis: Impact on Fertility	44
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant	42
Gut Microbiome in Colorectal Cancer: Clinical Diagnosis and Treatment	40
Computational Approaches and Challenges in Spatial Transcriptomics	40
Application of Microbiome in Forensics	39

Computational Methods for Single-Cell DNA Methylome Analysis	39
Integrative Genome-wide Association Meta-analysis of Aortic Aneurysm and Dissection Identifies Five Novel Genes	38
Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques	37
BLUPmrMLM: A Fast mrMLM Algorithm in Genome-wide Association Studies	35
Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins	35
Comprehensive Analysis of Ubiquitously Expressed Genes in Humans from a Data-Driven Perspective	32