Frontiers in Neuroinformatics

Article	Citations
A Simulation Toolkit for Testing the Sensitivity and Accuracy of Corticometry Pipelines	124
Editorial: Innovative methods for sleep staging using neuroinformatics	76
Chronic jet lag-like conditions dysregulate molecular profiles of neurological disorders in nucleus accumbens and prefrontal cortex	68
The quest to share data	67
Intra-V1 functional networks and classification of observed stimuli	52
hvEEGNet: a novel deep learning model for high-fidelity EEG reconstruction	41
A multi-head self-attention deep learning approach for detection and recommendation of neuromagnetic high frequency oscillations in epilepsy	39
FN-OCT: Disease Detection Algorithm for Retinal Optical Coherence Tomography Based on a Fusion Network	38
Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach	37
Editorial: Neuroinformatics of large-scale brain modelling	37
State-dependent modulation of thalamocortical oscillations by gamma light flicker with different frequencies, intensities, and duty cycles	36
A computational model of Alzheimer's disease at the nano, micro, and macroscales	32
versaFlow: a versatile pipeline for resolution adapted diffusion MRI processing and its application to studying the variability of the PRIME-DE database	31
Detection of pulmonary embolism severity using clinical characteristics, hematological indices, and machine learning techniques	29
Deep Neuro-Vision Embedded Architecture for Safety Assessment in Perceptive Advanced Driver Assistance Systems: The Pedestrian Tracking System Use-Case	28
Predicting the clinical prognosis of acute ischemic stroke using machine learning: an application of radiomic biomarkers on non-contrast CT after intravascular interventional treatment	27
Systems Neuroscience Computing in Python (SyNCoPy): a python package for large-scale analysis of electrophysiological data	26
A standardized accelerometry method for characterizing tremor: Application and validation in an ageing population with postural and action tremor	25
Unsupervised method for representation transfer from one brain to another	24
Transdiagnostic clustering of self-schema from self-referential judgements identifies subtypes of healthy personality and depression	23
Multiple sclerosis and breast cancer risk: a meta-analysis of observational and Mendelian randomization studies	22
Multi-threshold image segmentation for melanoma based on Kapur’s entropy using enhanced ant colony optimization	22
Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks	22
QuNex—An integrative platform for reproducible neuroimaging analytics	21
Finding the limits of deep learning clinical sensitivity with fractional anisotropy (FA) microstructure maps	20

SynCoPa: Visualizing Connectivity Paths and Synapses Over Detailed Morphologies	20
Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study	18
Analyzing Complex Problem Solving by Dynamic Brain Networks	18
Web-based processing of physiological noise in fMRI: addition of the PhysIO toolbox to CBRAIN	18
Erratum: Mapping and validating a point neuron model on Intel's neuromorphic hardware Loihi	18
A review of risk concepts and models for predicting the risk of primary stroke	16
Online interoperable resources for building hippocampal neuron models via the Hippocampus Hub	15
Machine learning-based infection prediction model for newly diagnosed multiple myeloma patients	15
Project, toolkit, and database of neuroinformatics ecosystem: A summary of previous studies on “Frontiers in Neuroinformatics”	14
BitBrain and Sparse Binary Coincidence (SBC) memories: Fast, robust learning and inference for neuromorphic architectures	14
Editorial: Neuroscience, computing, performance, and benchmarks: Why it matters to neuroscience how fast we can compute	14
Light-weight neural network for intra-voxel structure analysis	14
Radiomics-driven neuro-fuzzy framework for rule generation to enhance explainability in MRI-based brain tumor segmentation	13
Age-Specific Adult Rat Brain MRI Templates and Tissue Probability Maps	13
Scaling and Benchmarking an Evolutionary Algorithm for Constructing Biophysical Neuronal Models	13
Half-UNet: A Simplified U-Net Architecture for Medical Image Segmentation	13
Erratum: Advancing prediction of risk of intraoperative massive blood transfusion in liver transplantation with machine learning models. A multicenter retrospective study	13
Alternative patterns of deep brain stimulation in neurologic and neuropsychiatric disorders	13
NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use	13
EpiBOX: An Automated Platform for Long-Term Biosignal Collection	13
Recognition of MI-EEG signals using extended-LSR-based inductive transfer learning	12
A systematic comparison of deep learning methods for EEG time series analysis	12
Corrigendum: Mapping and validating a point neuron model on intel's neuromorphic hardware Loihi	12
Editorial: Addressing large scale computing challenges in neuroscience: current advances and future directions	12
A scalable implementation of the recursive least-squares algorithm for training spiking neural networks	12
Multi-omics integration reveals a six-malignant cell maker gene signature for predicting prognosis in high-risk neuroblastoma	12
Multi-Scale Graph Representation Learning for Autism Identification With Functional MRI	12
Synthesis of diffusion-weighted MRI scalar maps from FLAIR volumes using generative adversarial networks	11
2.5D and 3D segmentation of brain metastases with deep learning on multinational MRI data	11
Machine learning reveals interhemispheric somatosensory coherence as indicator of anesthetic depth	11
ConGen—A Simulator-Agnostic Visual Language for Definition and Generation of Connectivity in Large and Multiscale Neural Networks	11
SDA: a data-driven algorithm that detects functional states applied to the EEG of Guhyasamaja meditation	11
PymoNNto: A Flexible Modular Toolbox for Designing Brain-Inspired Neural Networks	11
Long-range temporal correlations in resting state alpha oscillations in major depressive disorder and obsessive-compulsive disorder	11
STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale	10
Time-Frequency Representations of Brain Oscillations: Which One Is Better?	10
Discovering optimal features for neuron-type identification from extracellular recordings	10
The Multicentre Acute ischemic stroke imaGIng and Clinical data (MAGIC) repository: rationale and blueprint	10
Towards Bridging the Gap Between Computational Intelligence and Neuroscience in Brain-Computer Interfaces With a Common Description of Systems and Data	10
Contrastive self-supervised learning for neurodegenerative disorder classification	10
Translating single-neuron axonal reconstructions into meso-scale connectivity statistics in the mouse somatosensory thalamus	9
Events in context—The HED framework for the study of brain, experience and behavior	9
Editorial: Weakly supervised deep learning-based methods for brain image analysis	9
Enhanced Performance by Interpretable Low-Frequency Electroencephalogram Oscillations in the Machine Learning-Based Diagnosis of Post-traumatic Stress Disorder	9
A Validation of Supervised Deep Learning for Gait Analysis in the Cat	9
Enhanced heart sound anomaly detection via WCOS: a semi-supervised framework integrating wavelet, autoencoder and SVM	9
Feature Selection Techniques for a Machine Learning Model to Detect Autonomic Dysreflexia	9
A Quick and Easy Way to Estimate Entropy and Mutual Information for Neuroscience	9
Investigating cortical complexity and connectivity in rats with schizophrenia	9
Brain-Computer Interface using neural network and temporal-spectral features	8

Power spectral analysis of voltage-gated channels in neurons	8
Dynamic topological data analysis: a novel fractal dimension-based testing framework with application to brain signals	8
RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations	8
Editorial: Navigating the landscape of FAIR data sharing and reuse: repositories, standards, and resources	8
A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography	8
PyDapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS	8
Multi-Source Domain Adaptation Techniques for Mitigating Batch Effects: A Comparative Study	8
Can micro-expressions be used as a biomarker for autism spectrum disorder?	8
MIIND : A Model-Agnostic Simulator of Neural Populations	8
Brain structural alterations in young girls with Rett syndrome: A voxel-based morphometry and tract-based spatial statistics study	8
Multiscale co-simulation design pattern for neuroscience applications	8
Patterns of inflammation, microstructural alterations, and sodium accumulation define multiple sclerosis subtypes after 15 years from onset	8
Explainable artificial intelligence based on feature optimization for age at onset prediction of spinocerebellar ataxia type 3	7
Building a realistic, scalable memory model with independent engrams using a homeostatic mechanism	7
Introducing Region Based Pooling for handling a varied number of EEG channels for deep learning models	7
Decoding EEG rhythms offline and online during motor imagery for standing and sitting based on a brain-computer interface	7
Identifying Boys With Autism Spectrum Disorder Based on Whole-Brain Resting-State Interregional Functional Connections Using a Boruta-Based Support Vector Machine Approach	7
Editorial: Recent applications of noninvasive physiological signals and artificial intelligence	7
Editorial: Physical neuromorphic computing and its industrial applications	7
Neuroimaging article reexecution and reproduction assessment system	7
Classification of ROI-based fMRI data in short-term memory tasks using discriminant analysis and neural networks	7
Impact of interferon-β and dimethyl fumarate on nonlinear dynamical characteristics of electroencephalogram signatures in patients with multiple sclerosis	7
Neural simulation pipeline: Enabling container-based simulations on-premise and in public clouds	7
Deep CNN ResNet-18 based model with attention and transfer learning for Alzheimer's disease detection	7
A canonical polyadic tensor basis for fast Bayesian estimation of multi-subject brain activation patterns	7
Matlab Open Source Code: Noise-Assisted Multivariate Empirical Mode Decomposition Based Causal Decomposition for Causality Inference of Bivariate Time Series	7
Identifying discriminative features of brain network for prediction of Alzheimer’s disease using graph theory and machine learning	7
Editorial: Reproducible analysis in neuroscience	7
FAIR in action: Brain-CODE - A neuroscience data sharing platform to accelerate brain research	7
EPAT: a user-friendly MATLAB toolbox for EEG/ERP data processing and analysis	7
Efficient simulation of neural development using shared memory parallelization	7
Progressive 3D biomedical image registration network based on deep self-calibration	6
A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data	6
Editorial: Bringing together data- and knowledge-driven solutions for a better understanding and effective diagnostics of neurological disorders	6
Efficient parameter calibration and real-time simulation of large-scale spiking neural networks with GeNN and NEST	6
A new machine learning model for predicting severity prognosis in patients with pulmonary embolism: Study protocol from Wenzhou, China	6
Brain subnetworks most sensitive to alterations of functional connectivity in Schizophrenia: a data-driven approach	6
Prediction of Neural Diameter From Morphology to Enable Accurate Simulation	6
The ROSMAP project: aging and neurodegenerative diseases through omic sciences	6
Estimation of Emotional Arousal Changes of a Group of Individuals During Movie Screening Using Steady-State Visual-Evoked Potential	6
Novel Hybrid Brain-Computer Interface for Virtual Reality Applications Using Steady-State Visual-Evoked Potential-Based Brain–Computer Interface and Electrooculogram-Based Eye Tracking for Increased I	6
Enhancing brain tumor detection in MRI with a rotation invariant Vision Transformer	6
Turbulent dynamics and whole-brain modeling: toward new clinical applications for traumatic brain injury	6
FlywheelTools: Data Curation and Manipulation on the Flywheel Platform	6
CoMB-Deep: Composite Deep Learning-Based Pipeline for Classifying Childhood Medulloblastoma and Its Classes	6
Assessing the Reliability of Template-Based Clustering for Tractography in Healthy Human Adults	6
BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure	6
Panama: An Open-Source Educational App for Ion Channel Biophysics Simulation	6
SparNet: A Convolutional Neural Network for EEG Space-Frequency Feature Learning and Depression Discrimination	5
Functional MRI study of feedback-based reinforcement learning in depression	5
suMRak: a multi-tool solution for preclinical brain MRI data analysis	5
Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy	5
Test-retest reliability of peak location in the sensorimotor network of resting state fMRI for potential rTMS targets	5
Multi illumination color constancy based on multi-scale supervision and single-scale estimation cascade convolution neural network	5
Differential processing of intrinsic vs. extrinsic coordinates in wrist movement: connectivity and chronometry perspectives	5
Quantifying evoked responses through information-theoretical measures	5
Evaluation of an English language phoneme-based imagined speech brain computer interface with low-cost electroencephalography	5
M3: using mask-attention and multi-scale for multi-modal brain MRI classification	5
An enhanced deep deterministic policy gradient algorithm for intelligent control of robotic arms	5
Fiber Clustering Acceleration With a Modified Kmeans++ Algorithm Using Data Parallelism	5
A System-on-Chip Based Hybrid Neuromorphic Compute Node Architecture for Reproducible Hyper-Real-Time Simulations of Spiking Neural Networks	5
Improving the detection of sleep slow oscillations in electroencephalographic data	5
Editorial: Bio-Inspired Physiological Signal(s) and Medical Image(s) Neural Processing Systems Based on Deep Learning and Mathematical Modeling for Implementing Bio-Engineering Applications in Medical	5
Comparing the Performance of Two Radiomic Models to Predict Progression and Progression Speed of White Matter Hyperintensities	5
A generalized deep learning network for fractional anisotropy reconstruction: Application to epilepsy and multiple sclerosis	5
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance	5
A Robust Modular Automated Neuroimaging Pipeline for Model Inputs to TheVirtualBrain	5
Modeling Neurodegeneration in silico With Deep Learning	4
BrainQuake: An Open-Source Python Toolbox for the Stereoelectroencephalography Spatiotemporal Analysis	4
Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements	4
Domain adaptation for EEG-based, cross-subject epileptic seizure prediction	4
Early detection of mild cognitive impairment through neuropsychological tests in population screenings: a decision support system integrating ontologies and machine learning	4
Neural network system for analyzing statistical factors of patients for predicting the survival of dental implants	4
Identifying natural inhibitors against FUS protein in dementia through machine learning, molecular docking, and dynamics simulation	4
Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies	4
The image and data archive at the laboratory of neuro imaging	4
Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling	4
Development and Validation of a Semi-Automated, Preclinical, MRI-Template Based PET Image Data Analysis Tool for Rodents	4
Efficient federated learning for distributed neuroimaging data	4
Enhancing human activity recognition for the elderly and individuals with disabilities through optimized Internet-of-Things and artificial intelligence integration with advanced neural networks	4

Editorial: Brain Modeling of Neurogenerative Disorders	4
ProbeInterface: A Unified Framework for Probe Handling in Extracellular Electrophysiology	4
Effects of individualized brain anatomies and EEG electrode positions on inferred activity of the primary auditory cortex	4
TReC: Transferred ResNet and CBAM for Detecting Brain Diseases	4
Artificial intelligence role in advancement of human brain connectome studies	4
The Case for Optimized Edge-Centric Tractography at Scale	4
Medical Image Interpolation Using Recurrent Type-2 Fuzzy Neural Network	4
Microglial morphometric analysis: so many options, so little consistency	4
3D Segmentation of Perivascular Spaces on T1-Weighted 3 Tesla MR Images With a Convolutional Autoencoder and a U-Shaped Neural Network	4
A fast and robust hippocampal subfields segmentation: HSF revealing lifespan volumetric dynamics	4
Brain MRI sequence and view plane identification using deep learning	4
NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query	3
Non-stationary neural signal to image conversion framework for image-based deep learning algorithms	3
Commentary: Accelerating spiking neural network simulations with PymoNNto and PymoNNtorch	3
LaminaRGeneVis: A Tool to Visualize Gene Expression Across the Laminar Architecture of the Human Neocortex	3
Video-based marker-free tracking and multi-scale analysis of mouse locomotor activity and behavioral aspects in an open field arena: A perspective approach to the quantification of complex gait distur	3
LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features	3
Mitigating Computer Limitations in Replicating Numerical Simulations of a Neural Network Model With Hodgkin-Huxley-Type Neurons	3
Intradialytic hypotension prediction using covariance matrix-driven whale optimizer with orthogonal structure-assisted extreme learning machine	3
DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network	3
Exploring white matter dynamics and morphology through interactive numerical phantoms: the White Matter Generator	3
Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs	3
Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies	3
NeuroWRAP: integrating, validating, and sharing neurodata analysis workflows	3
Deep Learning in Large and Multi-Site Structural Brain MR Imaging Datasets	3
Review of Generative Adversarial Networks in mono- and cross-modal biomedical image registration	3
Characterizing Network Search Algorithms Developed for Dynamic Causal Modeling	3
Reproducible supervised learning-assisted classification of spontaneous synaptic waveforms with Eventer	3
On the Use of a Multimodal Optimizer for Fitting Neuron Models. Application to the Cerebellar Granule Cell	3
Harmonizing AI governance regulations and neuroinformatics: perspectives on privacy and data sharing	3
An accessible and versatile deep learning-based sleep stage classifier	3
The pursuit of approaches to federate data to accelerate Alzheimer’s disease and related dementia research: GAAIN, DPUK, and ADDI	3
NeuroDecodeR: a package for neural decoding in R	3
Quantitative assessment of neurodevelopmental maturation: a comprehensive systematic literature review of artificial intelligence-based brain age prediction in pediatric populations	3
vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis	3
Comparison of CNN-Learned vs. Handcrafted Features for Detection of Parkinson's Disease Dysgraphia in a Multilingual Dataset	3
The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models	3
Expected affine: A registration method for damaged section in serial sections electron microscopy	3
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases	3
DR-IIXRN : Detection Algorithm of Diabetic Retinopathy Based on Deep Ensemble Learning and Attention Mechanism	3
A Spiking Neural Network Builder for Systematic Data-to-Model Workflow	3
A Programmable Ontology Encompassing the Functional Logic of the Drosophila Brain	2
Editorial: Image and geometry analysis for brain informatics	2
In silico analyses of the involvement of GPR55, CB1R and TRPV1: response to THC, contribution to temporal lobe epilepsy, structural modeling and updated evolution	2
On the Minimal Amount of EEG Data Required for Learning Distinctive Human Features for Task-Dependent Biometric Applications	2
Enabling uncertainty estimation in neural networks through weight perturbation for improved Alzheimer's disease classification	2
An optimized framework for processing multicentric polysomnographic data incorporating expert human oversight	2
Novel methods for elucidating modality importance in multimodal electrophysiology classifiers	2
Deep extreme learning machine with knowledge augmentation for EEG seizure signal recognition	2
A Probabilistic Atlas of the Pineal Gland in the Standard Space	2
Automatic segmentation of hemorrhagic transformation on follow-up non-contrast CT after acute ischemic stroke	2
JUN and PDGFRA as Crucial Candidate Genes for Childhood Autism Spectrum Disorder	2
Fireworks explosion boosted Harris Hawks optimization for numerical optimization: Case of classifying the severity of COVID-19	2
NIRS-ICA: A MATLAB Toolbox for Independent Component Analysis Applied in fNIRS Studies	2
Optimizing neuroscience data management by combining REDCap, BIDS and SQLite: a case study in Deep Brain Stimulation	2
Harmonizing data on correlates of sleep in children within and across neurodevelopmental disorders: lessons learned from an Ontario Brain Institute cross-program collaboration	2
Neuromorphic-P2M: processing-in-pixel-in-memory paradigm for neuromorphic image sensors	2
Comparing feature selection and machine learning approaches for predicting CYP2D6 methylation from genetic variation	2
A Hybrid Deep Learning Method for Early and Late Mild Cognitive Impairment Diagnosis With Incomplete Multimodal Data	2
Retraction: NeuroSuites: an online platform for running neuroscience, statistical, and machine learning tools	2
Influence of the Number of Channels and Classification Algorithm on the Performance Robustness to Electrode Shift in Steady-State Visual Evoked Potential-Based Brain-Computer Interfaces	2
Application of a Hermite-based measure of non-Gaussianity to normality tests and independent component analysis	2
A Waveform-Independent Measure of Recurrent Neural Activity	2
Editorial: APPNING: Animal Population Imaging	2
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data	2
Deploying and Optimizing Embodied Simulations of Large-Scale Spiking Neural Networks on HPC Infrastructure	2
Learning the heterogeneous representation of brain's structure from serial SEM images using a masked autoencoder	2
Embedding Functional Brain Networks in Low Dimensional Spaces Using Manifold Learning Techniques	2
An enhanced ant colony optimizer with Cauchy-Gaussian fusion and novel movement strategy for multi-threshold COVID-19 X-ray image segmentation	2
Modeling Brain Volume Using Deep Learning-Based Physical Activity Features in Patients With Dementia	2
Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles	2
Counterfactual Explanation of Brain Activity Classifiers Using Image-To-Image Transfer by Generative Adversarial Network	2
Alteration of brain nuclei in obese children with and without Prader-Willi syndrome	2
Editorial: Protecting privacy in neuroimaging analysis: balancing data sharing and privacy preservation	2
Reproducible brain PET data analysis: easier said than done	2
A scoping review of mathematical models covering Alzheimer's disease progression	2