Frontiers in Neuroinformatics

Article	Citations
Automatic Diagnosis of Schizophrenia in EEG Signals Using CNN-LSTM Models	102
Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies	62
Review of Deep Learning Approaches for the Segmentation of Multiple Sclerosis Lesions on Brain MRI	58
Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey	53
SARA-GAN: Self-Attention and Relative Average Discriminator Based Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction	49
X-Vectors: New Quantitative Biomarkers for Early Parkinson's Disease Detection From Speech	44
neuPrint: An open access tool for EM connectomics	43
Half-UNet: A Simplified U-Net Architecture for Medical Image Segmentation	39
CoMB-Deep: Composite Deep Learning-Based Pipeline for Classifying Childhood Medulloblastoma and Its Classes	36
An Evaluation of the EEG Alpha-to-Theta and Theta-to-Alpha Band Ratios as Indexes of Mental Workload	32
PyGeNN: A Python Library for GPU-Enhanced Neural Networks	31
3D Segmentation of Perivascular Spaces on T1-Weighted 3 Tesla MR Images With a Convolutional Autoencoder and a U-Shaped Neural Network	29
Machine learning for autism spectrum disorder diagnosis using structural magnetic resonance imaging: Promising but challenging	28
DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network	28
Deep Learning in Large and Multi-Site Structural Brain MR Imaging Datasets	27
Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain	26
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance	26
NeuroRA: A Python Toolbox of Representational Analysis From Multi-Modal Neural Data	26
BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure	25
THINGSvision: A Python Toolbox for Streamlining the Extraction of Activations From Deep Neural Networks	24
Microglial morphometric analysis: so many options, so little consistency	23
DR-IIXRN : Detection Algorithm of Diabetic Retinopathy Based on Deep Ensemble Learning and Attention Mechanism	22
Scale-free and oscillatory spectral measures of sleep stages in humans	21
FN-OCT: Disease Detection Algorithm for Retinal Optical Coherence Tomography Based on a Fusion Network	21
TReC: Transferred ResNet and CBAM for Detecting Brain Diseases	20

Medical Image Interpolation Using Recurrent Type-2 Fuzzy Neural Network	20
Multi-Scale Graph Representation Learning for Autism Identification With Functional MRI	19
A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography	19
A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data	18
QuNex—An integrative platform for reproducible neuroimaging analytics	18
SparNet: A Convolutional Neural Network for EEG Space-Frequency Feature Learning and Depression Discrimination	16
Semi-Supervised Learning in Medical Images Through Graph-Embedded Random Forest	16
Comparison of Resampling Techniques for Imbalanced Datasets in Machine Learning: Application to Epileptogenic Zone Localization From Interictal Intracranial EEG Recordings in Patients With Focal Epile	15
Integrative Base Ontology for the Research Analysis of Alzheimer’s Disease-Related Mild Cognitive Impairment	14
Constructing Brain Connectivity Model Using Causal Network Reconstruction Approach	14
vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis	14
QDECR: A Flexible, Extensible Vertex-Wise Analysis Framework in R	13
Multi-Dimensional Enhanced Seizure Prediction Framework Based on Graph Convolutional Network	13
Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE	13
A Validation of Supervised Deep Learning for Gait Analysis in the Cat	13
Development of a Non-invasive Deep Brain Stimulator With Precise Positioning and Real-Time Monitoring of Bioimpedance	12
JUN and PDGFRA as Crucial Candidate Genes for Childhood Autism Spectrum Disorder	12
Feature Selection Techniques for a Machine Learning Model to Detect Autonomic Dysreflexia	12
The Brain Observatory Storage Service and Database (BossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery	12
A Quick and Easy Way to Estimate Entropy and Mutual Information for Neuroscience	12
Novel methods for elucidating modality importance in multimodal electrophysiology classifiers	11
Multi-threshold image segmentation for melanoma based on Kapur’s entropy using enhanced ant colony optimization	11
The Stroke Neuro-Imaging Phenotype Repository: An Open Data Science Platform for Stroke Research	10
2.5D and 3D segmentation of brain metastases with deep learning on multinational MRI data	10
Machine Learning Techniques for the Diagnosis of Schizophrenia Based on Event-Related Potentials	10
Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs	10
Regional Brain Fusion: Graph Convolutional Network for Alzheimer's Disease Prediction and Analysis	10
Comparative Study of Multi-Delay Pseudo-Continuous Arterial Spin Labeling Perfusion MRI and CT Perfusion in Ischemic Stroke Disease	10
FlywheelTools: Data Curation and Manipulation on the Flywheel Platform	10
MP3: Medical Software for Processing Multi-Parametric Images Pipelines	9
Neural network system for analyzing statistical factors of patients for predicting the survival of dental implants	9
Deploying and Optimizing Embodied Simulations of Large-Scale Spiking Neural Networks on HPC Infrastructure	9
Novel Hybrid Brain-Computer Interface for Virtual Reality Applications Using Steady-State Visual-Evoked Potential-Based Brain–Computer Interface and Electrooculogram-Based Eye Tracking for Increased I	9
Prediction model for suicide based on back propagation neural network and multilayer perceptron	9
Brian2Loihi: An emulator for the neuromorphic chip Loihi using the spiking neural network simulator Brian	9
Browsing Multiple Subjects When the Atlas Adaptation Cannot Be Achieved via a Warping Strategy	9
Bioinformatic Analysis of the Proteome in Exosomes Derived From Plasma: Exosomes Involved in Cholesterol Metabolism Process of Patients With Spinal Cord Injury in the Acute Phase	9
An Automated Approach for the Detection of Alzheimer's Disease From Resting State Electroencephalography	9
Multimodal Ensemble Deep Learning to Predict Disruptive Behavior Disorders in Children	9
Comparing the Electrophysiology and Morphology of Human and Mouse Layer 2/3 Pyramidal Neurons With Bayesian Networks	9
Advancing Prediction of Risk of Intraoperative Massive Blood Transfusion in Liver Transplantation With Machine Learning Models. A Multicenter Retrospective Study	8
Fiber Clustering Acceleration With a Modified Kmeans++ Algorithm Using Data Parallelism	8
A Robust Modular Automated Neuroimaging Pipeline for Model Inputs to TheVirtualBrain	8
An RBF neural network based on improved black widow optimization algorithm for classification and regression problems	8
Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling	8
Statistical Analysis of Graph-Theoretic Indices to Study EEG-TMS Connectivity in Patients With Depression	8
A review: Music-emotion recognition and analysis based on EEG signals	8
On the Minimal Amount of EEG Data Required for Learning Distinctive Human Features for Task-Dependent Biometric Applications	8
Time-Frequency Representations of Brain Oscillations: Which One Is Better?	8
EDEN: A High-Performance, General-Purpose, NeuroML-Based Neural Simulator	7

Deep Neuro-Vision Embedded Architecture for Safety Assessment in Perceptive Advanced Driver Assistance Systems: The Pedestrian Tracking System Use-Case	7
LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features	7
Knowledge Representation for Multi-Scale Physiology Route Modeling	7
Age-Specific Adult Rat Brain MRI Templates and Tissue Probability Maps	7
Identifying Boys With Autism Spectrum Disorder Based on Whole-Brain Resting-State Interregional Functional Connections Using a Boruta-Based Support Vector Machine Approach	7
NIRS-ICA: A MATLAB Toolbox for Independent Component Analysis Applied in fNIRS Studies	7
A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations	7
Interpretable evaluation for the Brunnstrom recovery stage of the lower limb based on wearable sensors	7
A systematic comparison of deep learning methods for EEG time series analysis	7
Fast Simulation of a Multi-Area Spiking Network Model of Macaque Cortex on an MPI-GPU Cluster	7
Providing Evidence for the Null Hypothesis in Functional Magnetic Resonance Imaging Using Group-Level Bayesian Inference	7
Local Label Point Correction for Edge Detection of Overlapping Cervical Cells	7
bSRWPSO-FKNN: A boosted PSO with fuzzy K-nearest neighbor classifier for predicting atopic dermatitis disease	7
A Hybrid Deep Learning Method for Early and Late Mild Cognitive Impairment Diagnosis With Incomplete Multimodal Data	7
Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas	7
Routing Brain Traffic Through the Von Neumann Bottleneck: Parallel Sorting and Refactoring	7
Studying the Factors of Human Carotid Atherosclerotic Plaque Rupture, by Calculating Stress/Strain in the Plaque, Based on CEUS Images: A Numerical Study	7
Decoding EEG rhythms offline and online during motor imagery for standing and sitting based on a brain-computer interface	7
A standardized accelerometry method for characterizing tremor: Application and validation in an ageing population with postural and action tremor	6
CoBeL-RL: A neuroscience-oriented simulation framework for complex behavior and learning	6
From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings	6
Self-Regulation in the Time of Lockdown	6
Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset	6
Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach	6
Towards Bridging the Gap Between Computational Intelligence and Neuroscience in Brain-Computer Interfaces With a Common Description of Systems and Data	6
A Tensor-Based Framework for rs-fMRI Classification and Functional Connectivity Construction	6
A Spelling Paradigm With an Added Red Dot Improved the P300 Speller System Performance	6
Effects of Visual Attentional Load on the Tactile Sensory Memory Indexed by Somatosensory Mismatch Negativity	6
Validation and Diagnostic Performance of a CFD-Based Non-invasive Method for the Diagnosis of Aortic Coarctation	6
Embedding Functional Brain Networks in Low Dimensional Spaces Using Manifold Learning Techniques	6
Intradialytic hypotension prediction using covariance matrix-driven whale optimizer with orthogonal structure-assisted extreme learning machine	6
Temporal and spatial dynamic propagation of electroencephalogram by combining power spectral and synchronization in childhood absence epilepsy	6
The role of wrist-worn technology in the management of Parkinson’s disease in daily life: A narrative review	6
BrainQuake: An Open-Source Python Toolbox for the Stereoelectroencephalography Spatiotemporal Analysis	6
The pursuit of approaches to federate data to accelerate Alzheimer’s disease and related dementia research: GAAIN, DPUK, and ADDI	5
Whom to Believe? Understanding and Modeling Brain Activity in Source Credibility Evaluation	5
Classification of Electrophysiological Signatures With Explainable Artificial Intelligence: The Case of Alarm Detection in Flight Simulator	5
Tuberculous pleural effusion prediction using ant colony optimizer with grade-based search assisted support vector machine	5
Modeling Neurodegeneration in silico With Deep Learning	5
A System-on-Chip Based Hybrid Neuromorphic Compute Node Architecture for Reproducible Hyper-Real-Time Simulations of Spiking Neural Networks	5
Can We Push the “Quasi-Perfect Artifact Rejection” Even Closer to Perfection?	5
Non-stationary neural signal to image conversion framework for image-based deep learning algorithms	5
An EEG study of human trust in autonomous vehicles based on graphic theoretical analysis	5
Comparison of CNN-Learned vs. Handcrafted Features for Detection of Parkinson's Disease Dysgraphia in a Multilingual Dataset	5
Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry	5
Multi-Source Domain Adaptation Techniques for Mitigating Batch Effects: A Comparative Study	5
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data	5
Mapping and Validating a Point Neuron Model on Intel's Neuromorphic Hardware Loihi	5
Research on Voxel-Based Features Detection and Analysis of Alzheimer’s Disease Using Random Survey Support Vector Machine	5
Riemannian Geometry of Functional Connectivity Matrices for Multi-Site Attention-Deficit/Hyperactivity Disorder Data Harmonization	5
A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting	5
Influence of the Number of Channels and Classification Algorithm on the Performance Robustness to Electrode Shift in Steady-State Visual Evoked Potential-Based Brain-Computer Interfaces	5
Adaptive Multimodal Neuroimage Integration for Major Depression Disorder Detection	5
Detection of pulmonary embolism severity using clinical characteristics, hematological indices, and machine learning techniques	5
Chronic jet lag-like conditions dysregulate molecular profiles of neurological disorders in nucleus accumbens and prefrontal cortex	5
Framework for the Classification of Emotions in People With Visual Disabilities Through Brain Signals	4
Review of Generative Adversarial Networks in mono- and cross-modal biomedical image registration	4
Neural network-derived perfusion maps: A model-free approach to computed tomography perfusion in patients with acute ischemic stroke	4
PyMVPD: A Toolbox for Multivariate Pattern Dependence	4
Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning	4
Novel hybrid visual stimuli incorporating periodic motions into conventional flickering or pattern-reversal visual stimuli for steady-state visual evoked potential-based brain-computer interfaces	4
RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations	4
Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks	4
An enhanced ant colony optimizer with Cauchy-Gaussian fusion and novel movement strategy for multi-threshold COVID-19 X-ray image segmentation	4
A domain adaptation benchmark for T1-weighted brain magnetic resonance image segmentation	4
An updated analysis of the association between CD2-associated protein gene rs9349407 polymorphism and Alzheimer’s disease in Chinese population	4
State and Trait Anxiety Share Common Network Topological Mechanisms of Human Brain	4
Non-parametric MRI Brain Atlas for the Polish Population	4
Video-based marker-free tracking and multi-scale analysis of mouse locomotor activity and behavioral aspects in an open field arena: A perspective approach to the quantification of complex gait distur	4
A Probabilistic Atlas of the Pineal Gland in the Standard Space	4
Accurate segmentation of neonatal brain MRI with deep learning	4
Factorized discriminant analysis for genetic signatures of neuronal phenotypes	4
Viability Study of Machine Learning-Based Prediction of COVID-19 Pandemic Impact in Obsessive-Compulsive Disorder Patients	4
MIIND : A Model-Agnostic Simulator of Neural Populations	4
NNMT: Mean-Field Based Analysis Tools for Neuronal Network Models	4
Alternation of Resting-State Functional Connectivity Between Visual Cortex and Hypothalamus in Guinea Pigs With Experimental Glucocorticoid Enhanced Myopia After the Treatment of Electroacupuncture	4
The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance	4
Validation of Affect-tag Affective and Cognitive Indicators	4
Estimation of Emotional Arousal Changes of a Group of Individuals During Movie Screening Using Steady-State Visual-Evoked Potential	4
Effects of individualized brain anatomies and EEG electrode positions on inferred activity of the primary auditory cortex	4

A deep learning framework for classifying microglia activation state using morphology and intrinsic fluorescence lifetime data	4
Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study	4
An enhanced deep deterministic policy gradient algorithm for intelligent control of robotic arms	4
Brain structural alterations in young girls with Rett syndrome: A voxel-based morphometry and tract-based spatial statistics study	4
A data-driven approach to clinical decision support in tinnitus retraining therapy	3
On the Use of a Multimodal Optimizer for Fitting Neuron Models. Application to the Cerebellar Granule Cell	3
Alternative patterns of deep brain stimulation in neurologic and neuropsychiatric disorders	3
Enhanced Performance by Interpretable Low-Frequency Electroencephalogram Oscillations in the Machine Learning-Based Diagnosis of Post-traumatic Stress Disorder	3
FAIR in action: Brain-CODE - A neuroscience data sharing platform to accelerate brain research	3
Predicting in vitro single-neuron firing rates upon pharmacological perturbation using Graph Neural Networks	3
oFVSD: a Python package of optimized forward variable selection decoder for high-dimensional neuroimaging data	3
Neuromorphic-P2M: processing-in-pixel-in-memory paradigm for neuromorphic image sensors	3
The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models	3
Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation	3
NoLiTiA: An Open-Source Toolbox for Non-linear Time Series Analysis	3
Mitigating Computer Limitations in Replicating Numerical Simulations of a Neural Network Model With Hodgkin-Huxley-Type Neurons	3
A fast and robust hippocampal subfields segmentation: HSF revealing lifespan volumetric dynamics	3
Multi illumination color constancy based on multi-scale supervision and single-scale estimation cascade convolution neural network	3
The Involvement of Long Non-coding RNA and Messenger RNA Based Molecular Networks and Pathways in the Subacute Phase of Traumatic Brain Injury in Adult Mice	3
Event-Based Update of Synapses in Voltage-Based Learning Rules	3
Parameter Estimation of Two Spiking Neuron Models With Meta-Heuristic Optimization Algorithms	3
On temporal scale-free non-periodic stimulation and its mechanisms as an infinite improbability drive of the brain’s functional connectogram	3
State-dependent modulation of thalamocortical oscillations by gamma light flicker with different frequencies, intensities, and duty cycles	3
Electrical Source Imaging in Freely Moving Rats: Evaluation of a 12-Electrode Cortical Electroencephalography System	3
A deep learning approach with subregion partition in MRI image analysis for metastatic brain tumor	3
EpiBOX: An Automated Platform for Long-Term Biosignal Collection	3
Functional MRI study of feedback-based reinforcement learning in depression	3
Alteration of brain nuclei in obese children with and without Prader-Willi syndrome	3
Synthesis of diffusion-weighted MRI scalar maps from FLAIR volumes using generative adversarial networks	3
Black-box and surrogate optimization for tuning spiking neural models of striatum plasticity	3
Effect of subthalamic coordinated reset deep brain stimulation on Parkinsonian gait	3
Domain adaptation for EEG-based, cross-subject epileptic seizure prediction	3
Polynomial, piecewise-Linear, Step (PLS): A Simple, Scalable, and Efficient Framework for Modeling Neurons	3
BOLD Monitoring in the Neural Simulator ANNarchy	3
Non-invasive Evaluation of Brain Death Caused by Traumatic Brain Injury by Ultrasound Imaging	3
A generalized deep learning network for fractional anisotropy reconstruction: Application to epilepsy and multiple sclerosis	3
NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use	2
An Eigenvalues-Based Covariance Matrix Bootstrap Model Integrated With Support Vector Machines for Multichannel EEG Signals Analysis	2
Multiple sclerosis and breast cancer risk: a meta-analysis of observational and Mendelian randomization studies	2
Editorial: Multi-site neuroimage analysis: Domain adaptation and batch effects	2
Development and Validation of a Semi-Automated, Preclinical, MRI-Template Based PET Image Data Analysis Tool for Rodents	2
Automated detection of cerebral microbleeds on MR images using knowledge distillation framework	2
Modeling Brain Volume Using Deep Learning-Based Physical Activity Features in Patients With Dementia	2
PymoNNto: A Flexible Modular Toolbox for Designing Brain-Inspired Neural Networks	2
Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies	2
Counterfactual Explanation of Brain Activity Classifiers Using Image-To-Image Transfer by Generative Adversarial Network	2
Explainable artificial intelligence based on feature optimization for age at onset prediction of spinocerebellar ataxia type 3	2
Scaling and Benchmarking an Evolutionary Algorithm for Constructing Biophysical Neuronal Models	2
A Programmable Ontology Encompassing the Functional Logic of the Drosophila Brain	2
Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles	2
The Case for Optimized Edge-Centric Tractography at Scale	2
Modeling the Sequential Pattern Variability of the Electromotor Command System of Pulse Electric Fish	2
PyDapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS	2
STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale	2
LaminaRGeneVis: A Tool to Visualize Gene Expression Across the Laminar Architecture of the Human Neocortex	2
Machine learning reveals interhemispheric somatosensory coherence as indicator of anesthetic depth	2
Progressive 3D biomedical image registration network based on deep self-calibration	2
Matlab Open Source Code: Noise-Assisted Multivariate Empirical Mode Decomposition Based Causal Decomposition for Causality Inference of Bivariate Time Series	2
A review of risk concepts and models for predicting the risk of primary stroke	2
Robin’s Viewer: Using deep-learning predictions to assist EEG annotation	2
A Waveform-Independent Measure of Recurrent Neural Activity	2
The image and data archive at the laboratory of neuro imaging	2
Analyzing Complex Problem Solving by Dynamic Brain Networks	2
A method for reconstruction of interpretable brain networks from transient synchronization in resting-state BOLD fluctuations	2
Arpra: An Arbitrary Precision Range Analysis Library	2
Nonconvex Nonlocal Tucker Decomposition for 3D Medical Image Super-Resolution	2
Classification of Obsessive-Compulsive Disorder Using Distance Correlation on Resting-State Functional MRI Images	2
An accessible and versatile deep learning-based sleep stage classifier	2
Editorial: Brain Modeling of Neurogenerative Disorders	2
CACTUS: a computational framework for generating realistic white matter microstructure substrates	2