OOIR: Observatory of International Research

Papers

(The TQCC of Molecular Genetics and Genomics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-03-01 to 2025-03-01.)

Article	Citations
Phenotypic simulation for fruit-related traits in F1 progenies of chili peppers (Capsicum annuum) using genomic prediction based solely on parental information	56
Distinct role of HAMP and HAMP-like linker domains in regulating the activity of Hik1p, a hybrid histidine kinase 3 from Magnaporthe oryzae	46
Independent DSG4 frameshift variants in cats with hair shaft dystrophy	46
The genomic history of southwestern Chinese populations demonstrated massive population migration and admixture among proto-Hmong–Mien speakers and incoming migrants	39
Mapping of dynamic QTLs for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a backcross inbred line population of Upland cotton	31
The influence of VDR polymorphisms on the type 2 diabetes susceptibility in Chinese: an interaction with hypertriglyceridemia	26
Genomic characterization of a rare Carica papaya X chromosome mutant reveals a candidate monodehydroascorbate reductase 4 gene involved in all-hermaphrodite phenomenon	25
BS-Seq reveals major role of differential CHH methylation during leaf rust resistance in wheat (Triticum aestivum L.)	24
A survey of transcriptome complexity using full-length isoform sequencing in the tea plant Camellia sinensis	24
Revealing diverse alternative splicing variants of the highly homologous SMN1 and SMN2 genes by targeted long-read sequencing	22
Application of the prenatal BACs-on-Beads™ assay for rapid prenatal detection of sex chromosome mosaicism	21
Interaction network among factors involved in heterocyst-patterning in cyanobacteria	20
Comprehensive bioinformatics analyses reveal immune genes responsible for altered immune microenvironment in intervertebral disc degeneration	20
Novel cataract-causing variant c.177dupC in c-MAF regulates the expression of crystallin genes for cell apoptosis via a mitochondria-dependent pathway	19
A novel strategy to map a locus associated with flowering time in canola (Brassica napus L.)	19
Analysis of TSC1 and TSC2 genes and evaluation of phenotypic correlations with tuberous sclerosis	17
The maternal ancestry of the Kavaratti islanders and the last glacial maximum aftermath	17
Association investigations between ACE1 and ACE2 polymorphisms and severity of COVID-19 disease	17
Genomic region and origin for selected traits during differentiation of small-fruit cultivars in Japanese apricot (Prunus mume)	17
Spondyloenchondrodysplasia in five new patients: identification of three novel ACP5 variants with variable neurological presentations	15
Whole-genome sequence and mass spectrometry study of the snow blight fungus Phacidium infestans (Karsten) DSM 5139 growing at freezing temperatures	15
Genetic analysis of patients with low-frequency non-syndromic hearing loss	15
Characterization and diversity of CRISPR/Cas systems in Klebsiella oxytoca	15
Correction: Genetic evidence for a single founding population of the Lakshadweep Islands	14
Differentially used codons among essential genes in bacteria identified by machine learning-based analysis	14

A novel imprinted locus on bovine chromosome 18 homologous with human chromosome 16q24.1	14
From cactus to crop: genomic insights of a beneficial and non-pathogenic Curtobacterium flaccumfaciens strain and the evolution of its pathosystem	14
EMP1 correlated with cancer progression and immune characteristics in pan-cancer and ovarian cancer	14
Full-length transcriptome characterization and analysis of Carrizo Citrange and molecular insights into pathogen defense	13
Forensic efficiency and genetic polymorphisms of 12 X-chromosomal STR loci in Northeastern Thai populations	13
The mechanism of INO80D involved in chromatin remodeling regulating spermatogenesis in Chinese mitten crab (Eriocheir sinensis)	12
Tomatidine activates autophagy to improve lung injury and inflammation in sepsis by inhibiting NF-κB and MAPK pathways	12
Pps1, phosphatidylserine synthase, regulates the salt stress response in Schizosaccharomyces pombe	12
Characterization of hAT DNA transposon superfamily in the genome of Neotropical fish Apareiodon sp.	12
Genomics-based analysis of four porcine-derived lactic acid bacteria strains and their evaluation as potential probiotics	12
Genetic testing enables a precision medicine approach for nephrolithiasis and nephrocalcinosis in pediatrics: a single-center cohort	11
A frameshift insertion in FA2H causes a recessively inherited form of ichthyosis congenita in Chianina cattle	11
Amplicon genome fishing (AGF): a rapid and efficient method for sequencing target cis-regulatory regions in nonmodel organisms	11
Selection signatures for heat tolerance in Brazilian horse breeds	11
A meta-analysis of different von Hippel Lindau mutations: are they related to retinal capillary hemangioblastoma?	11
Integrated analysis of miRNA and mRNA transcriptomic reveals antler growth regulatory network	10
Transcriptome and metabolome profiling in different stages of infestation of Eucalyptus urophylla clones by Ralstonia solanacearum	10
Meiotic behavior, transmission and active genes of B chromosomes in the cichlid Astatotilapia latifasciata: new clues about nature, evolution and maintenance of accessory elements	10
Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress	10
Dimorphic frataxin and its gene regulation by sex steroids in hamsters	10
A novel cancer-associated fibroblasts risk score model predict survival and immunotherapy in lung adenocarcinoma	10
A two-phase comprehensive NSCLC prognostic study identifies lncRNAs with significant main effect and interaction	10
Improving the accuracy of genomic predictions in an outcrossing species with hybrid cultivars between heterozygote parents: a case study of oil palm (Elaeis guineensis Jacq.)	10
Single-cell RNA sequencing reveals surface markers of primordial germ cells in chicken and zebra finch	9
ARNSHL gene identification: past, present and future	9
High level of somatic mutations detected in a diploid banana wild relative Musa basjoo	9
Regulation of PPARγ/CPT-1 expression ameliorates cochlear hair cell injury by regulating cellular lipid metabolism and oxidative stress	9
Genetic analysis based on 15 autosomal short tandem repeats (STRs) in the Chaouia population, western center Morocco, and genetic relationships with worldwide populations	9
Mesenchymal stem cells-derived exosomes carrying microRNA-30b confer protection against pulmonary fibrosis by downregulating Runx1 via Spred2	9
Genetic evidence for a single founding population of the Lakshadweep Islands	9
The first maternal genetic study of hunter-gatherers from Vietnam	9
Natural variation and genetic loci underlying resistance to grain shattering in standing crop of modern wheat	9
Different scales of gene duplications occurring at different times have jointly shaped the NBS-LRR genes in Prunus species	9
In silico analysis of a novel pathogenic variant c.7G > A in C14orf39 gene identified by WES in a Pakistani family with azoospermia	8
Blood transcriptome analysis revealed the immune changes and immunological adaptation of wildness training giant pandas	8
RNA sequencing reveals a complete picture of a homozygous missense variant in a patient with VPS13D movement disorder: a case report and review of the literature	8
Super enhancer loci of EGFR regulate EGFR variant 8 through enhancer RNA and strongly associate with survival in HNSCCs	8
A homozygous missense variant in YTHDC2 induces azoospermia in two siblings	8
Enhancing tiny millets through genome editing: current status and future prospects	8
Small RNA sequencing and identification of papaya (Carica papaya L.) miRNAs with potential cross-kingdom human gene targets	8
Correction to: XG-PseU: an eXtreme Gradient Boosting based method for identifying pseudouridine sites	8
Deletions in GSN gene associated with growth traits of four Chinese cattle breeds	8
Construction of a high-density genetic map using specific-length amplified fragment markers and identification of QTLs for branching angle in poplar	7
The formation of proto-austronesians: insights from a revised phylogeography of the paternal founder lineage	7
Unravelling epigenetic mechanisms in Cerastoderma edule genome: a comparison of healthy and neoplastic cockles	7
Dynamic physiological and transcriptome changes reveal a potential relationship between the circadian clock and salt stress response in Ulmus pumila	7
Genome resequencing-based high-density genetic map and QTL detection for yield and fiber quality traits in diploid Asiatic cotton (Gossypium arboreum)	7
Four classic “de novo” genes all have plausible homologs and likely evolved from retro-duplicated or pseudogenic sequences	7
Epigenetic inactivation of DNA repair genes as promising prognostic and predictive biomarkers in urothelial bladder carcinoma patients	7
The signaling pathway of levamisole-sensitive-acetylcholine receptors involved in short-term forgetting of Caenorhabditis elegans	7

De novo assembly of the complete mitochondrial genome of Mycetophylax simplex Emery, 1888 through organelle targeting revels no substantial expansion of gene spacers, but rather some slightly shorter	7
Introduction of a diverse genetic background of Pyrus into Malus through intergeneric hybridization	7
Single- and multi-trait genomic prediction and genome-wide association analysis of grain yield and micronutrient-related traits in ICARDA wheat under drought environment	6
Construction of circRNA-related ceRNA networks in longissimus dorsi muscle of Queshan Black and Large White pigs	6
Robust regression based genome-wide multi-trait QTL analysis	6
Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm	6
Cloning and in silico characterization of cinnamyl alcohol dehydrogenase gene involved in lignification of Tall fescue (Festuca arundinacea Schreb.)	6
Understanding the genomic selection for crop improvement: current progress and future prospects	6
Potential molecular patterns for tuberculosis susceptibility in diabetic patients with poor glycaemic control: a pilot study	6
Genetic dissection of flowering time in flax (Linum usitatissimum L.) through single- and multi-locus genome-wide association studies	6
The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA	6
Genomic insights into the molecular mechanisms of a Pseudomonas strain significant in its survival in Kongsfjorden, an Arctic fjord	6
Genetic variability of 23 autosomal STRs in Austroasiatic-speaking populations from Thailand	6
Characterizing identity by descent segments in Chinese interpopulation unrelated individual pairs	6
Genotypic spectrum of ABCA4-associated retinal degenerations in 211 unrelated Mexican patients: identification of 22 novel disease-causing variants	6
Development and validation of allele-specific PCR-based SNP typing in a gene on chromosome D03 conferring resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)	6
A comparative study of population genetic structure reveals patterns consistent with selection at functional microsatellites in common sunflower	6
Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella ger	6
Diagnostic, grading and prognostic role of a restricted miRNAs signature in primary and metastatic brain tumours. Discussion on their therapeutic perspectives	5
Genome-wide association study reveals novel loci and a candidate gene for resistance to frogeye leaf spot (Cercospora sojina) in soybean	5
Microbial community structure and exploration of bioremediation enzymes: functional metagenomics insight into Arabian Sea sediments	5
Precise diagnosis of a hereditary spherocytosis patient with complicated hematological phenotype	5
A computational approach to biological pathogenicity	5
Functional testing for variant prioritization in a family with long QT syndrome	5
CACNA1H restrains chemotherapy resistance in ovarian clear cell carcinoma cells by repressing autophagy	5
SLC10A1 rs2296651 variant (S267F mutation) predicts biochemical traits, hepatitis B virus infection susceptibility and the risk of gallstone disease	5
Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk	5
Inheritance and molecular mapping of solitary/cluster fruit-bearing habit in Luffa	5
Construction of immune-related gene pairs signature to predict the overall survival of multiple myeloma patients based on whole bone marrow gene expression profiling	5
Novel mutation in LRP5 gene cause rare osteosclerosis: cases studies and literature review	5
Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium	5
Predisposition to atrioventricular septal defects may be caused by SOX7 variants that impair interaction with GATA4	5
Microbial community composition associated with early developmental stages of the Indian white shrimp, Penaeus indicus	5
Population genetic analyses of Eastern Chinese Han nationality using ForenSeq™ DNA Signature Prep Kit	5
Diversity and potential functional role of phyllosphere-associated actinomycetota isolated from cupuassu (Theobroma grandiflorum) leaves: implications for ecosystem dynamics and plant defense strategi	5
Enhanced SA and Ca2+ signaling results in PCD-mediated spontaneous leaf necrosis in wheat mutant wsl	5
Using whole exome sequencing to identify susceptibility genes associated with nonsyndromic cleft lip with or without cleft palate	5
Genetic diversity and population genetic structure analysis of an extensive collection of wild and cultivated Vigna accessions	5
CircSSBP2 acts as a MiR-2400 sponge to promote intramuscular preadipocyte proliferation by regulating NDRG1	5
Clinical significance of SPOP and APC gene alterations in colorectal cancer in Indian population	5
Genome mining, antimicrobial and plant growth-promoting potentials of halotolerant Bacillus paralicheniformis ES-1 isolated from salt mine	5
GWAS scans of cereal cyst nematode (Heterodera avenae) resistance in Indian wheat germplasm	5
Characterization and clinical relevance of PDGFRA pathway copy number variation gains across human cancers	5
Genome-wide association study identified QTLs and genes underlying early seedling vigour in aus rice (Oryza sativa L.)	5
Novel MEI1 mutations cause chromosomal and DNA methylation abnormalities leading to embryonic arrest and implantation failure	5
The heat stress transcription factor family in Aegilops tauschii: genome-wide identification and expression analysis under various abiotic stresses and light conditions	5
Mutational investigation of 17 causative genes in a cohort of 113 families with nonsyndromic early-onset high myopia in northwestern China	5