OOIR: Observatory of International Research

Papers

(The TQCC of Molecular Genetics and Genomics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
PGC-1α affects skeletal muscle and adipose tissue development by regulating mitochondrial biogenesis	47
WheatQTLdb: a QTL database for wheat	45
Codon usage bias and environmental adaptation in microbial organisms	40
New insights into the fine-scale history of western–eastern admixture of the northwestern Chinese population in the Hexi Corridor via genome-wide genetic legacy	38
Universal fluorescence in situ hybridization (FISH) protocol for mapping repetitive DNAs in insects and other arthropods	33
Construction of circRNA-related ceRNA networks in longissimus dorsi muscle of Queshan Black and Large White pigs	26
Transcriptional regulatory networks in response to drought stress and rewatering in maize (Zea mays L.)	25
Genome-wide analysis and transcriptional reprogrammings of MYB superfamily revealed positive insights into abiotic stress responses and anthocyanin accumulation in Carthamus tinctorius L.	24
Pangenome analyses of Bacillus pumilus, Bacillus safensis, and Priestia megaterium exploring the plant-associated features of bacilli strains isolated from canola	22
Origin of ethnic groups, linguistic families, and civilizations in China viewed from the Y chromosome	20
iCDA-CMG: identifying circRNA-disease associations by federating multi-similarity fusion and collective matrix completion	19
Mapping of dynamic QTLs for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a backcross inbred line population of Upland cotton	19
Assessing the causal relationship between immune traits and systemic lupus erythematosus by bi-directional Mendelian randomization analysis	19
Comprehensive genomic analysis of Bacillus velezensis AL7 reveals its biocontrol potential against Verticillium wilt of cotton	18
Identification of genetic variation for salt tolerance in Brassica napus using genome-wide association mapping	18
Metabolomics and transcriptome analysis of the biosynthesis mechanism of flavonoids in the seeds of Euryale ferox Salisb at different developmental stages	18
Genetic dissection of flowering time in flax (Linum usitatissimum L.) through single- and multi-locus genome-wide association studies	17
FN1 encoding fibronectin as a pivotal signaling gene for therapeutic intervention against pancreatic cancer	16
Sex-specific DNA methylation: impact on human health and development	16
RWSF-BLP: a novel lncRNA-disease association prediction model using random walk-based multi-similarity fusion and bidirectional label propagation	15
Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results?	15
Mechanisms of pre-attachment Striga resistance in sorghum through genome-wide association studies	14
A single nucleotide substitution in the coding region of Ogura male sterile gene, orf138, determines effectiveness of a fertility restorer gene, Rfo, in radish	14
Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella ger	14
The genomic history of southwestern Chinese populations demonstrated massive population migration and admixture among proto-Hmong–Mien speakers and incoming migrants	13

TaNAC35 acts as a negative regulator for leaf rust resistance in a compatible interaction between common wheat and Puccinia triticina	13
Identification of hub lncRNA ceRNAs in multiple sclerosis based on ceRNA mechanisms	13
The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA	13
Causal associations of waist circumference and waist-to-hip ratio with type II diabetes mellitus: new evidence from Mendelian randomization	13
Genome-wide transcriptome and translatome analyses reveal the role of protein extension and domestication in liver cancer oncogenesis	12
Response of xenobiotic biodegradation and metabolic genes in Tribolium castaneum following eugenol exposure	12
Comparative study of codon usage profiles of Zingiber officinale and its associated fungal pathogens	12
Cost-efficiency tradeoff is optimized in various cancer types revealed by genome-wide analysis	12
A celery transcriptional repressor AgERF8 negatively modulates abscisic acid and salt tolerance	12
Circular RNA screening identifies circMYLK4 as a regulator of fast/slow myofibers in porcine skeletal muscles	12
Integrated analysis of miRNA and mRNA transcriptomic reveals antler growth regulatory network	12
Epigenetics in psoriasis: perspective of DNA methylation	11
Predicting gene phenotype by multi-label multi-class model based on essential functional features	11
Analysis of natural variation of the rice blast resistance gene Pike and identification of a novel allele Pikg	11
The cellulose synthase (CesA) gene family in four Gossypium species: phylogenetics, sequence variation and gene expression in relation to fiber quality in Upland cotton	11
Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm	11
Classifying single nucleotide polymorphisms in humans	11
Genetic dissection of maize seedling traits in an IBM Syn10 DH population under the combined stress of lead and cadmium	11
Identification, characterization and expression analysis of lineage-specific genes within mangrove species Aegiceras corniculatum	10
A potential endogenous gibberellin-mediated signaling cascade regulated floral transition in Magnolia × soulangeana ‘Changchun’	10
Genome mining, antimicrobial and plant growth-promoting potentials of halotolerant Bacillus paralicheniformis ES-1 isolated from salt mine	10
Genetic testing enables a precision medicine approach for nephrolithiasis and nephrocalcinosis in pediatrics: a single-center cohort	10
Role of c-Src and reactive oxygen species in cardiovascular diseases	10
Genome-wide association analysis discovered new loci and candidate genes associated with low-phosphorus tolerance based on shoot mineral elements concentrations in soybean	10
Molecular variation among virulent and avirulent strains of the quarantine nematode Bursaphelenchus xylophilus	10
The emerging regulatory roles of noncoding RNAs in immune function of fish: MicroRNAs versus long noncoding RNAs	10
Effect of interaction between obesity-promoting genetic variants and behavioral factors on the risk of obese phenotypes	10
Comprehensive bioinformatics analyses reveal immune genes responsible for altered immune microenvironment in intervertebral disc degeneration	10
Genetic susceptibility analysis of FGF5 polymorphism to preeclampsia in Chinese Han population	9
GATA2 regulates the CAD susceptibility gene ADTRP rs6903956 through preferential interaction with the G allele	9
Deciphering specific miRNAs in brain tumors: a 5-miRNA signature in glioblastoma	9
BRCA1, BRCA2, TP53, PIK3CA, PTEN and AKT1 genes mutations in Burkina Faso breast cancer patients: prevalence, spectrum and novel variant	9
Small RNA sequencing and identification of papaya (Carica papaya L.) miRNAs with potential cross-kingdom human gene targets	9
Interplay between circular RNA, microRNA, and human diseases	9
Transcriptome repository of North-Western Himalayan endangered medicinal herbs: a paramount approach illuminating molecular perspective of phytoactive molecules and secondary metabolism	9
Mutational investigation of 17 causative genes in a cohort of 113 families with nonsyndromic early-onset high myopia in northwestern China	9
The pungent-variable sweet chili pepper ‘Shishito’ (Capsicum annuum) provides insights regarding the relationship between pungency, the number of seeds, and gene expression involving capsaicinoid bios	9
A prescient evolutionary model for genesis, duplication and differentiation of MIR160 homologs in Brassicaceae	8
CRISPR/Cas9, a promising approach for the treatment of β-thalassemia: a systematic review	8
Plasma cell-free DNA promise monitoring and tissue injury assessment of COVID-19	8
Understanding the genomic selection for crop improvement: current progress and future prospects	8
Independent evolution of intermediate bill widths in a seabird clade	8
Allelic variation in sugary1 gene affecting kernel sweetness among diverse-mutant and -wild-type maize inbreds	8
Complexity of gene paralogues resolved in biosynthetic pathway of hepatoprotective iridoid glycosides in a medicinal herb, Picrorhiza kurroa through differential NGS transcriptomes	8
Development of a genetic risk score for obesity predisposition evaluation	8
Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress	8
Cluster II che genes of Pseudomonas syringae pv. tabaci 6605, orthologs of cluster I in Pseudomonas aeruginosa, are required for chemotaxis and virulence	8
High promoter sequence variation in subgroup 6 members of R2R3-MYB genes is involved in different floral anthocyanin color patterns in Lilium spp.	8
Strategic transgene-free approaches of CRISPR-based genome editing in plants	8
Combining cytogenetic and genomic technologies for deciphering challenging complex chromosomal rearrangements	8

DNA methylation patterns suggest the involvement of DNMT3B and TET1 in osteosarcoma development	7
Comparison of genome-wide DNA methylation patterns between antler precartilage and cartilage	7
Identification and characterization of circular RNAs in Longissimus dorsi muscle tissue from two goat breeds using RNA-Seq	7
A frameshift insertion in FA2H causes a recessively inherited form of ichthyosis congenita in Chianina cattle	7
Whole-genome resequencing reveals loci with allelic transmission ratio distortion in F1 chicken population	7
Performance comparison: exome sequencing as a single test replacing Sanger sequencing	7
QTL mapping and candidate gene prediction for fiber yield and quality traits in a high-generation cotton chromosome substitution line with Gossypium barbadense segments	7
Long non-coding RNAs: a valuable biomarker for metabolic syndrome	7
Identification of novel susceptibility genes for non-syndromic cleft lip with or without cleft palate using NGS-based multigene panel testing	7
Dynamic physiological and transcriptome changes reveal a potential relationship between the circadian clock and salt stress response in Ulmus pumila	7
Random transposon mutagenesis identifies genes essential for transformation in Methanococcus maripaludis	6
Pathogenicity evaluation and the genotype–phenotype analysis of OPA1 variants	6
Genetic diversity and population genetic structure analysis of an extensive collection of wild and cultivated Vigna accessions	6
The comparative studies of complete chloroplast genomes in Actinidia (Actinidiaceae): novel insights into heterogenous variation, clpP gene annotation and phylogenetic relationships	6
Integrative analysis of the pharmaceutical active ingredient and transcriptome of the aerial parts of Glycyrrhiza uralensis under salt stress reveals liquiritin accumulation via ABA-mediated signaling	6
Fyn and Lyn gene polymorphisms impact the risk of thyroid cancer	6
Identification and expression analysis of invertase family genes during grape (Vitis vinifera L.) berry development under CPPU and GA treatment	6
Pex30 undergoes phosphorylation and regulates peroxisome number in Saccharomyces cerevisiae	6
Distinct role of HAMP and HAMP-like linker domains in regulating the activity of Hik1p, a hybrid histidine kinase 3 from Magnaporthe oryzae	6
Transcriptomic analysis reveals GA3 is involved in regulating flavonoid metabolism in grape development for facility cultivation	6
Deep sequencing unveils altered cardiac miRNome in congenital heart disease	6
Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE	6
Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium	6
Blood transcriptome analysis revealed the immune changes and immunological adaptation of wildness training giant pandas	6
Potential of camel rumen derived Bacillus subtilis and Bacillus velezensis strains for application in plant biomass hydrolysis	6
Elucidation of sequence polymorphism in fuzzless-seed cotton lines	5
Whole-genome sequencing and comparative genomic analysis of potential biotechnological strains of Trichoderma harzianum, Trichoderma atroviride, and Trichoderma reesei	5
Maternal obesity induces liver lipid accumulation of offspring through the lncRNA Lockd/mTOR autophagy pathway	5
Congenital leptin and leptin receptor deficiencies in nine new families: identification of six novel variants and review of literature	5
Mapping-by-sequencing the locus of EMS-induced mutation responsible for tufted-fuzzless seed phenotype in cotton	5
Genome resequencing-based high-density genetic map and QTL detection for yield and fiber quality traits in diploid Asiatic cotton (Gossypium arboreum)	5
Phylogenomics, CAZyome and core secondary metabolome of Streptomyces albus species	5
Isolation and characterization of SGF3, a novel Microviridae phage infecting Shigella flexneri	5
Molecular identification and functional verification of SPL9 and SPL15 of Lilium	5
Association of transcription factor 7-like 2 rs12255372 polymorphism with susceptibility of type 2 diabetes mellitus in Bangladeshi population	5
Transcriptome profiling reveals the roles of pigment formation mechanisms in yellow Paeonia delavayi flowers	5
Identification of MYB gene family and functional analysis of GhMYB4 in cotton (Gossypium spp.)	5
DNA recombination and repair in Wolbachia: RecA and related proteins	5
In silico analysis of a novel pathogenic variant c.7G > A in C14orf39 gene identified by WES in a Pakistani family with azoospermia	5
Diagnostic, grading and prognostic role of a restricted miRNAs signature in primary and metastatic brain tumours. Discussion on their therapeutic perspectives	5
Characteristics of RNA alternative splicing and its potential roles in ginsenoside biosynthesis in a single plant of ginseng, Panax ginseng C.A. Meyer	5
Neolithic expansion and the 17q21.31 inversion in Iberia: an evolutionary approach to H2 haplotype distribution in the Near East and Europe	5
Prevalence and analysis of CRISPR/Cas systems in Pseudomonas aeruginosa isolates from Greece	5
Compound heterozygous PLA2G6 loss-of-function variants in Swaledale sheep with neuroaxonal dystrophy	5
Total flavonoids of Radix Tetrastigma suppress inflammation-related hepatocellular carcinoma cell metastasis	5
A novel homozygous mutation in ACTL7A leads to male infertility	5
Prenatal trio-based whole exome sequencing in fetuses with abnormalities of the skeletal system	5
GWAS scans of cereal cyst nematode (Heterodera avenae) resistance in Indian wheat germplasm	5