OOIR: Observatory of International Research

Papers

(The TQCC of Molecular Genetics and Genomics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
WheatQTLdb: a QTL database for wheat	41
New insights into the fine-scale history of western–eastern admixture of the northwestern Chinese population in the Hexi Corridor via genome-wide genetic legacy	37
GC usage of SARS-CoV-2 genes might adapt to the environment of human lung expressed genes	37
PGC-1α affects skeletal muscle and adipose tissue development by regulating mitochondrial biogenesis	35
GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents	34
Codon usage bias and environmental adaptation in microbial organisms	33
Universal fluorescence in situ hybridization (FISH) protocol for mapping repetitive DNAs in insects and other arthropods	28
An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice	28
Construction of circRNA-related ceRNA networks in longissimus dorsi muscle of Queshan Black and Large White pigs	26
A deep learning model for plant lncRNA-protein interaction prediction with graph attention	25
Genome-wide association studies using 50 K rice genic SNP chip unveil genetic architecture for anaerobic germination of deep-water rice population of Assam, India	24
FCGCNMDA: predicting miRNA-disease associations by applying fully connected graph convolutional networks	23
Major latex protein-like encoding genes contribute to Rhizoctonia solani defense responses in sugar beet	21
Pangenome analyses of Bacillus pumilus, Bacillus safensis, and Priestia megaterium exploring the plant-associated features of bacilli strains isolated from canola	20
Effects of shading on lignin biosynthesis in the leaf of tea plant (Camellia sinensis (L.) O. Kuntze)	19
Genome-wide analysis and transcriptional reprogrammings of MYB superfamily revealed positive insights into abiotic stress responses and anthocyanin accumulation in Carthamus tinctorius L.	18
Transcriptional regulatory networks in response to drought stress and rewatering in maize (Zea mays L.)	18
Metabolomics and transcriptome analysis of the biosynthesis mechanism of flavonoids in the seeds of Euryale ferox Salisb at different developmental stages	18
Use Chou’s 5-steps rule to identify DNase I hypersensitive sites via dinucleotide property matrix and extreme gradient boosting	17
Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean	17
SARS-CoV-2 has the advantage of competing the iMet–tRNAs with human hosts to allow efficient translation	17
Mapping of dynamic QTLs for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a backcross inbred line population of Upland cotton	17
The bHLH gene family and its response to saline stress in Jilin ginseng, Panax ginseng C.A. Meyer	16
iCDA-CMG: identifying circRNA-disease associations by federating multi-similarity fusion and collective matrix completion	16
Harnessing the power of genetics: fast forward genetics in Caenorhabditis elegans	16

Reanalysis and integration of public microarray datasets reveals novel host genes modulated in leprosy	16
Origin of ethnic groups, linguistic families, and civilizations in China viewed from the Y chromosome	16
Identification of genetic variation for salt tolerance in Brassica napus using genome-wide association mapping	16
Genetic dissection of flowering time in flax (Linum usitatissimum L.) through single- and multi-locus genome-wide association studies	15
Four novel mutations of FAM20A in amelogenesis imperfecta type IG and review of literature for its genotype and phenotype spectra	15
FN1 encoding fibronectin as a pivotal signaling gene for therapeutic intervention against pancreatic cancer	15
QTL mapping for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing	14
A de novo transcriptome analysis revealed that photomorphogenic genes are required for carotenoid synthesis in the dark-grown carrot taproot	14
Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics	13
Sex-specific DNA methylation: impact on human health and development	13
Insights into the microbiota of larval and postlarval Pacific white shrimp (Penaeus vannamei) along early developmental stages: a case in pond level	13
Comprehensive genomic analysis of Bacillus velezensis AL7 reveals its biocontrol potential against Verticillium wilt of cotton	13
Mechanisms of pre-attachment Striga resistance in sorghum through genome-wide association studies	13
Causal associations of waist circumference and waist-to-hip ratio with type II diabetes mellitus: new evidence from Mendelian randomization	13
Cost-efficiency tradeoff is optimized in various cancer types revealed by genome-wide analysis	12
Comparative analysis of the pulmonary microbiome in healthy and diseased pigs	12
Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results?	12
TaNAC35 acts as a negative regulator for leaf rust resistance in a compatible interaction between common wheat and Puccinia triticina	12
Genetic dissection of maize seedling traits in an IBM Syn10 DH population under the combined stress of lead and cadmium	11
Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach	11
Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella ger	11
Integrated analysis of miRNA and mRNA transcriptomic reveals antler growth regulatory network	11
Heat-shock-induced tyrosinase gene ablation with CRISPR in zebrafish	11
Predicting gene phenotype by multi-label multi-class model based on essential functional features	11
RWSF-BLP: a novel lncRNA-disease association prediction model using random walk-based multi-similarity fusion and bidirectional label propagation	11
Response of xenobiotic biodegradation and metabolic genes in Tribolium castaneum following eugenol exposure	11
The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA	11
Identification of hub lncRNA ceRNAs in multiple sclerosis based on ceRNA mechanisms	11
A rare mutant of OFD1 gene responsible for Joubert syndrome with significant phenotype variation	10
Epigenetics in psoriasis: perspective of DNA methylation	10
Molecular variation among virulent and avirulent strains of the quarantine nematode Bursaphelenchus xylophilus	10
Comparative study of codon usage profiles of Zingiber officinale and its associated fungal pathogens	10
The genomic history of southwestern Chinese populations demonstrated massive population migration and admixture among proto-Hmong–Mien speakers and incoming migrants	10
A heterozygous hypomorphic mutation of Fanca causes impaired follicle development and subfertility in female mice	9
The cellulose synthase (CesA) gene family in four Gossypium species: phylogenetics, sequence variation and gene expression in relation to fiber quality in Upland cotton	9
Low expression of carotenoids cleavage dioxygenase 1 (ccd1) gene improves the retention of provitamin-A in maize grains during storage	9
Deciphering specific miRNAs in brain tumors: a 5-miRNA signature in glioblastoma	9
A celery transcriptional repressor AgERF8 negatively modulates abscisic acid and salt tolerance	9
A single nucleotide substitution in the coding region of Ogura male sterile gene, orf138, determines effectiveness of a fertility restorer gene, Rfo, in radish	9
A transcriptome atlas of silkworm silk glands revealed by PacBio single-molecule long-read sequencing	9
Identification, characterization and expression analysis of lineage-specific genes within mangrove species Aegiceras corniculatum	9
Genome-wide association analysis discovered new loci and candidate genes associated with low-phosphorus tolerance based on shoot mineral elements concentrations in soybean	8
Functional characterization of the AGL1 aegerolysin in the mycoparasitic fungus Trichoderma atroviride reveals a role in conidiation and antagonism	8
Comprehensive temporal reprogramming ensures dynamicity of transcriptomic profile for adaptive response in Taxus contorta	8
Revisiting the genetic background and phylogenetic structure of five Sino-Tibetan-speaking populations: insights from autosomal InDels	8
Combining cytogenetic and genomic technologies for deciphering challenging complex chromosomal rearrangements	8
Transcriptome analysis of heat stressed seedlings with or without pre-heat treatment in Cryptomeria japonica	8
Multifaceted genome-wide study identifies novel regulatory loci in SLC22A11 and ZNF45 for body mass index in Indians	8
MTNR1B gene on susceptibility to gestational diabetes mellitus: a two-stage hospital-based study in Southern China	8
The emerging regulatory roles of noncoding RNAs in immune function of fish: MicroRNAs versus long noncoding RNAs	8

A potential endogenous gibberellin-mediated signaling cascade regulated floral transition in Magnolia × soulangeana ‘Changchun’	8
Diverse mobilome of Dichotomius (Luederwaldtinia) schiffleri (Coleoptera: Scarabaeidae) reveals long-range horizontal transfer events of DNA transposons	8
Genome-wide transcriptome and translatome analyses reveal the role of protein extension and domestication in liver cancer oncogenesis	8
Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity	7
Identification of novel susceptibility genes for non-syndromic cleft lip with or without cleft palate using NGS-based multigene panel testing	7
Prospective avenues for human population genomics and disease mapping in southern Africa	7
Identification and characterization of circular RNAs in Longissimus dorsi muscle tissue from two goat breeds using RNA-Seq	7
Insights into the genetic characteristics and population structures of Chinese two Tibetan groups using 35 insertion/deletion polymorphic loci	7
Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm	7
Mig1 localization exhibits biphasic behavior which is controlled by both metabolic and regulatory roles of the sugar kinases	7
Classifying single nucleotide polymorphisms in humans	7
Circular RNA screening identifies circMYLK4 as a regulator of fast/slow myofibers in porcine skeletal muscles	7
Interplay between circular RNA, microRNA, and human diseases	7
De novo genome assembly of a Han Chinese male and genome-wide detection of structural variants using Oxford Nanopore sequencing	7
Small RNA sequencing and identification of papaya (Carica papaya L.) miRNAs with potential cross-kingdom human gene targets	7
Analysis of natural variation of the rice blast resistance gene Pike and identification of a novel allele Pikg	7
Complexity of gene paralogues resolved in biosynthetic pathway of hepatoprotective iridoid glycosides in a medicinal herb, Picrorhiza kurroa through differential NGS transcriptomes	7
Performance comparison: exome sequencing as a single test replacing Sanger sequencing	7
Multiple transcriptomic analyses and characterization of pathogen-related core effectors and LysM family members reveal their differential roles in fungal growth and pathogenicity in Penicillium expan	7
A novel gene in early childhood diabetes: EDEM2 silencing decreases SLC2A2 and PXD1 expression, leading to impaired insulin secretion	7
Effect of interaction between obesity-promoting genetic variants and behavioral factors on the risk of obese phenotypes	6
Mutational investigation of 17 causative genes in a cohort of 113 families with nonsyndromic early-onset high myopia in northwestern China	6
Up-regulation of GhPAP1A results in moderate anthocyanin accumulation and pigmentation in sub-red cotton	6
Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress	6
Independent evolution of intermediate bill widths in a seabird clade	6
High promoter sequence variation in subgroup 6 members of R2R3-MYB genes is involved in different floral anthocyanin color patterns in Lilium spp.	6
Pioneer factors and their in vitro identification methods	6
Genetic susceptibility analysis of FGF5 polymorphism to preeclampsia in Chinese Han population	6
Pex30 undergoes phosphorylation and regulates peroxisome number in Saccharomyces cerevisiae	6
Genome mining, antimicrobial and plant growth-promoting potentials of halotolerant Bacillus paralicheniformis ES-1 isolated from salt mine	6
Genetic diversity and population genetic structure analysis of an extensive collection of wild and cultivated Vigna accessions	6
Comprehensive bioinformatics analyses reveal immune genes responsible for altered immune microenvironment in intervertebral disc degeneration	6
A prescient evolutionary model for genesis, duplication and differentiation of MIR160 homologs in Brassicaceae	6
Whole-genome resequencing reveals loci with allelic transmission ratio distortion in F1 chicken population	6
CRISPR/Cas9, a promising approach for the treatment of β-thalassemia: a systematic review	6
Geographical structuring and low diversity of paternal lineages in Bahrain shown by analysis of 27 Y-STRs	6
Transcriptome repository of North-Western Himalayan endangered medicinal herbs: a paramount approach illuminating molecular perspective of phytoactive molecules and secondary metabolism	6
GATA2 regulates the CAD susceptibility gene ADTRP rs6903956 through preferential interaction with the G allele	6
Understanding the genomic selection for crop improvement: current progress and future prospects	6
Genetic testing enables a precision medicine approach for nephrolithiasis and nephrocalcinosis in pediatrics: a single-center cohort	6
A frameshift insertion in FA2H causes a recessively inherited form of ichthyosis congenita in Chianina cattle	6
Cluster II che genes of Pseudomonas syringae pv. tabaci 6605, orthologs of cluster I in Pseudomonas aeruginosa, are required for chemotaxis and virulence	6
The pungent-variable sweet chili pepper ‘Shishito’ (Capsicum annuum) provides insights regarding the relationship between pungency, the number of seeds, and gene expression involving capsaicinoid bios	6
Genetic analysis of tri-allelic patterns at the CODIS STR loci	6
Development of a genetic risk score for obesity predisposition evaluation	6