OOIR: Observatory of International Research

Papers

(The median citation count of Tree Genetics & Genomes is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Evaluating the accuracy of genomic prediction for the management and conservation of relictual natural tree populations	34
Transcriptome analysis and postharvest behavior of the kiwifruit ‘Actinidia deliciosa’ reveal the role of ethylene-related phytohormones during fruit ripening	18
Fine mapping of the locus controlling self-incompatibility in European hazelnut	14
A reference high-density genetic map of Theobroma grandiflorum (Willd. ex Spreng) and QTL detection for resistance to witches’ broom disease (Moniliophthora perniciosa)	14
Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing	13
Polyamine oxidase (PAO)–mediated polyamine catabolism plays potential roles in peach (Prunus persica L.) fruit development and ripening	12
Comparative plastid genome analyses of Rosa: Insights into the phylogeny and gene divergence	12
An accumulation of genetic variation and selection across the disease-related genes during apple domestication	11
Genomic relationship–based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii	11
SNP markers associated with resistance to frosty pod and black pod rot diseases in an F1 population of Theobroma cacao L.	11
Genome-wide association study of myrtle rust (Austropuccinia psidii) resistance in Eucalyptus obliqua (subgenus Eucalyptus)	11
ABA influences color initiation timing in P. avium L. fruits by sequentially modulating the transcript levels of ABA and anthocyanin-related genes	11
A low malic acid trait in cranberry fruit: genetics, molecular mapping, and interaction with a citric acid locus	11
Plastome characterization and comparative analyses of wild crabapples (Malus baccata and M. toringo): insights into infraspecific plastome variation and phylogenetic relationships	11
Comparison of selection methods for the establishment of a core collection using SSR markers for hazelnut (Corylus avellana L.) accessions from European germplasm repositories	11
Gene-ecological zonation and population genetic structure of Tectona grandis L.f. in India revealed by genome-wide SSR markers	11
Seed and pollen dispersal and fine-scale spatial genetic structure of a threatened tree species: Pericopsis elata (HARMS) Meeuwen (Fabaceae)	10
Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions	9
Assembly of Satsuma mandarin mitochondrial genome and identification of cytoplasmic male sterility–specific ORFs in a somatic cybrid of pummelo	9
Phylogeography and phylogeny of genus Quercus L. (Fagaceae) in Turkey implied by variations of trnT(UGU)-L(UAA)-F (GAA) chloroplast DNA region	9
Correction to: The haplotype‑resolved reference genome of lemon (Citrus limon L. Burm f.)	9
Haplotype structure analysis of a locus associated with fruit skin type on chromosome 8 in Japanese pear	9
Exposure of Eucalyptus to varied temperature and CO2 has a profound effect on the physiology and expression of genes related to cell wall formation and remodeling	8
The R2R3-MYB transcription factor VcMYB4a inhibits lignin biosynthesis in blueberry (Vaccinium corymbosum)	8
Genetic diversity and structure of the endemic and critically endangered Populus caspica in the Hyrcanian forests	8

Advanced genebank management of genetic resources of European wild apple, Malus sylvestris, using genome-wide SNP array data	7
Enviromic prediction enables the characterization and mapping of Eucalyptus globulus Labill breeding zones	7
Marker associations for fusiform rust resistance in a clonal population of loblolly pine (Pinus taeda, L.)	7
Date palm (Phoenix dactylifera L.) genetic improvement via biotechnological approaches	7
QTL analysis of crown gall disease resistance in apple: first plant R gene candidates effective against Rhizobium rhizogenes (Ti)	7
Continental-wide population genetics and post-Pleistocene range expansion in field maple (Acer campestre L.), a subdominant temperate broadleaved tree species	7
The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.)	7
Patterns of genomic diversity and linkage disequilibrium across the disjunct range of the Australian forest tree Eucalyptus globulus	7
Linkage mapping and QTL analysis of pecan (Carya illinoinensis) full-siblings using genotyping-by-sequencing	7
Genome-wide association analysis and validation with KASP markers for nut and shell traits in almond (Prunus dulcis [Mill.] D.A.Webb)	7
Efficient low-cost marker-assisted selection of trees with MALE STERILITY 1 (MS1) in Japanese cedar (Cryptomeria japonica D. Don) using bulk DNA samples	7
Genomic breeding values’ prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population	7
Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section	6
The transcriptomes of healthy and bitter pit-affected ‘Honeycrisp’ fruit reveal genes associated with disorder development and progression	6
Parent–offspring variation transmission in full-sib families revealed predominantly paternal inheritance of chloroplast DNA in Pinus massoniana (Pinaceae)	6
Genomics and adaptation in forest ecosystems	6
Diversity and structure of Coffea canephora from old seminal crops in Espírito Santo, Brazil: genetic resources for coffee breeding	6
DArTseq-derived SNPs for the genus Psidium reveal the high diversity of native species	6
Application of linear mixed models for multiple harvest/site trial analyses in perennial plant breeding	6
Single nucleotide polymorphism analysis in Leptospermum scoparium (Myrtaceae) supports two highly differentiated endemic species in Aotearoa New Zealand and Australia	5
Mapping of QTLs for citrus quality traits throughout the fruit maturation process on clementine (Citrus reticulata × C. sinensis) and mandarin (C. reticulata Blanco) genetic maps	5
Spatial genetic structure and mating system in forest tree populations from seasonally dry tropical forests: a review	5
Phylogeography and genetic structure of a subarctic-alpine shrub species, Alnus alnobetula (Ehrh.) K. Koch s. l., inferred from chloroplast DNA markers	5
Genome-wide association study for apple flesh browning: detection, validation, and physiological roles of QTLs	5
Genetic variation in fire recovery and other fire-related traits in a global eucalypt species	5
Genetic structure of an important widely distributed tropical forest tree, Shorea parvifolia, in Southeast Asia	5
Evolutionary relationship of the NBS-LRR gene family in Melaleuca and Eucalyptus (Myrtaceae)	4
Comparison of chloroplast genomes of compound-leaved maples and phylogenetic inference with other Acer species	4
Screening clonally replicated Acacia mangium breeding populations for tolerance to Ceratocystis canker and wilt disease	4
Comparative chloroplast genomes of Prunus subgenus Cerasus (Rosaceae): insights into sequence variations and phylogenetic relationships	4
Mitochondrial phylogeography of the ponderosa pines: widespread gene capture, interspecific sharing, and two unique lineages	4
Genetic diversity, population structure, and clonal verification in South African avocado cultivars using single nucleotide polymorphism (SNP) markers	4
Genomic prediction in a multi-generation Eucalyptus globulus breeding population	4
Genome-wide genetic diversity and IBD analysis reveals historic dissemination routes of pear in China	4
Genome-wide association study for morphological, physiological, and productive traits in Coffea arabica using structural equation models	4
Dynamic changes in the genetic parameters of growth traits with age and their associations with heterosis in hybrid Liriodendron	4
Transcriptome-based single-nucleotide polymorphism markers between Pinus brutia and Pinus halepensis and the analysis of their hybrids	4
Range shift and introgression of three Japanese Abies species: insights from population genetic data and species distribution modeling	4
Genetic linkage between the training and selection sets impacts the predictive ability of SNP markers in a cloned population of Pinus taeda L.	3
On the accuracy of threshold genomic prediction models for leaf miner and leaf rust resistance in arabica coffee	3
Genetic mapping of the dominant gene controlling weeping habit in Japanese chestnut (Castanea crenata Sieb. et Zucc.)	3
Estimation of genetic parameters associated with frosty pod rot (Moniliophthora roreri) and cacao production in Mexico	3
Correction to: Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families	3
High genetic diversity but spatially restricted genetic connectivity in a tropical montane cloud forest tree (Magnolia schiedeana)	3
Genetic relationship and parentages of historical peaches revealed by microsatellite markers	3
Divergence amid recurring gene flow: complex demographic histories for two North American pine species (Pinus pungens and P. rigida) fit growing expectations among forest trees	3
Preponderance of additive and non-additive variances for growth, ecophysiological and wood traits in Eucalyptus hybrid genotype-by-spacing interaction	3
Strong spatial structuring of clonal genetic diversity within blackthorn (Prunus spinosa) hedgerows and woodlands	3
Simulating deployment of genetic gain in a radiata pine breeding program with genomic selection	3
Demographic history and conservation aspects of two relict shrubs (Daphnimorpha spp., Thymelaeaceae) showing disjunct and restricted distribution in the southern part of Japan	3

Many candidates for a single chair: a critical review of the genetic determinant of flat fruit shape trait in peach (Prunus persica L. Batsch)	3
Origin of traditional sweet chestnut (Castanea sativa Mill.) varieties from the Northwest of the Iberian Peninsula	3
Traceability of provenance-collected lodgepole pine in a reforestation chain of custody case study	3
Abiotic factors predict taxonomic composition and genetic admixture in populations of hybridizing white oak species (Quercus sect. Quercus) on regional scale	3
Pigment composition analysis of fruit pulp in the recombinant progenies reveals the polygenic nature of pulp color inheritance in guava (Psidium guajava L.)	3
Construction of a DArT-seq marker–based genetic linkage map and identification of QTLs for yield in tea (Camellia sinensis (L.) O. Kuntze)	3
A comparative analysis of differential N6-methyladenosine (m6A) modification between non-transgenic and LBD15 overexpressing Poplar 84 K plants	3
The complete chloroplast genome sequence of American elm (Ulmus americana) and comparative genomics of related species	3
Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)	3
Sapling and coppice biomass heritabilities and potential gains from Eucalyptus polybractea progeny trials	2
Reproductive strategy of a temperate canopy tree Tilia cordata Mill. (Malvaceae) is related to temperature during flowering and density of recent recruits	2
Pleistocene-dated genomic divergence of avocado trees supports cryptic diversity in the Colombian germplasm	2
Isolation-by-ecology in a Neotropical savanna tree	2
QTL mapping of polymethoxyflavone (PMF) accumulation in citrus	2
Genetic variation and origin of mountain birch on a recently colonized glacial outwash plain by Vatnajökull glacier, southeast Iceland	2
Late Quaternary history of Siberian stone pine as revealed by genetic and paleoecological data	2
Genetic diversity and population structure analysis reveals the unique genetic composition of South African selected macadamia accessions	2
Strong genetic differentiation on a small geographic scale in the Neotropical rainforest understory tree Paypayrola blanchetiana (Violaceae)	2
Chloroplast genomes and nuclear sequences reveal the interspecific relationships of Crataegus bretschneideri C. K. Schneid. and related species in China	2
Genetic variation of a widespread subdominant tree species (Acer campestre L.) in Bosnia and Herzegovina	2
Modeling the genetic response of diameter growth in poplar hybrids growing in the center of Chile in the presence of Septoria canker	2
Upregulation of defense-related gene expressions associated with lethal growth failure in the hybrid seedlings of Japanese flowering cherry	2
Filling gaps of reference DNA barcodes in Syzygium from rainforest fragments in Sumatra	2
A genetic platform for predicting and reducing non-tenera contamination in oil palm (Elaeis guineensis) seed supply	2
Parametric mapping of QTL for resistance to European canker in apple in ‘Aroma’ × ‘Discovery’	2
Elucidation and characterization of QTLs for Russet formation on apple fruit in ‘Honeycrisp’-derived breeding germplasm	2
Use of plastid genome sequences in phylogeographic studies of tree species can be misleading without comprehensive sampling of co-occurring, related species	2
Empirical evaluation of multi-trait DNA testing in an apple seedling population	2
A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia	2
Additive and non-additive genetic variance in juvenile Sitka spruce (Picea sitchensis Bong. Carr)	2
Characterising the molecular diversity of ash (Fraxinus excelsior L.) at its western marginal range in Europe — phylogeographic insights and implications for conservation in Ireland	2
Spatial genetic patterns of the medicinal and edible shrub Lycium ruthenicum (Solanaceae) in arid Xinjiang, China	2
A high-density genetic map from a cacao F2 progeny and QTL detection for resistance to witches’ broom disease	2