Current Bioinformatics

Papers
(The TQCC of Current Bioinformatics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)
ArticleCitations
Construction and Comprehensive Analysis of a Special Competitive Endogenous RNAs Network to Reveal Potential Prognostic Biomarkers for Endometrial Carcinoma264
Whole-exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer73
MDAPlatform: A Component-based Platform for Constructing and Assessing miRNA-disease Association Prediction Methods51
Identifying Functional Modules Using Energy Minimization with Graph Cuts47
Supervised Learning in Spiking Neural Networks with Synaptic Delay Plasticity: An Overview47
Integrated Multi-Omics Data Analysis Identifies a Novel Genetics-Risk Gene of IRF4 Associated with Prognosis of Oral Cavity Cancer43
Bioinformatic Resources for Plant Genomic Research38
Artificial Intelligence for Bioinformatics and Biomedicine32
MaxDEL: Accurate and Efficient Calling of Genomic Deletions from Single Molecular Real-time Sequencing Using Integrated Method29
Meet the Editorial Board Member28
A Simple Protein Evolutionary Classification Method Based on the Mutual Relations Between Protein Sequences28
Meet the Editorial Board Member21
Acknowledgements to Reviewers21
GenRepAI: Utilizing Artificial Intelligence to Identify Repeats in Genomic Suffix Trees20
ProtPathDB: A Web-based Resource of Parasite Proteases19
Association Analysis Between Introns and mRNAs in Caenorhabditis elegans Genes with Different Expression Levels18
Genome-wide Identification of Differently Expressed lncRNAs, mRNAs, and circRNAs in Patients with Osteoarthritis17
Analyzing Association Between Expression Quantitative Trait and CNV for Breast Cancer Based on Gene Interaction Network Clustering and Group Sparse Learning16
Comparison of Gene Selection Methods for Clustering Single-cell RNA-seq Data15
i4mC-CPXG: A Computational Model for Identifying DNA N4- methylcytosine Sites in Rosaceae Genome Using Novel Encoding Strategy15
AthEDL: Identifying Enhancers in Arabidopsis thaliana Using an Attention-based Deep Learning Method15
Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-generation Sequencing14
Cervical Cancer Metastasis and Recurrence Risk Prediction Based on Deep Convolutional Neural Network12
Toll-like Receptor 4 Gene Polymorphisms in Chinese Population After Allogeneic Hematopoietic Stem Cell Transplantation12
Recent Progress of Deep Learning Methods for RBP Binding Sites Prediction on circRNA12
Novel Design for Multi-Epitope Vaccines of COVID-19 and Critical In-Silico Assessment Steps11
A Comparative Analysis of Biological Data Integration Systems Famous for Data Exploitation and Knowledge Discovery11
Graph Neural Networks in Biomedical Data: A Review11
Construction of an Expression Classifier Based on an Immune-related Ten-gene Panel for Rapid Diagnosis of Papillary Thyroid Carcinoma Risks11
A Cross-entropy-based Method for Essential Protein Identification in Yeast Protein-protein Interaction Network11
Delineating Characteristic Sequence and Structural Features of Precursor and Mature Piwi-interacting RNAs of Epithelial Ovarian Cancer10
Prioritizing Cancer lncRNA Modulators via Integrated lncRNA-mRNA Network and Somatic Mutation Data10
Deep-RPA: Vulnerability Classification of a Genome for CRISPR/Cas9 Off-targets10
Multimodal Deep Learning for Cancer Survival Prediction: A Review10
Enhancing Drug-Target Binding Affinity Prediction through Deep Learning and Protein Secondary Structure Integration10
Efficacy Screening of Prospective Anti-allergic Drug Candidates: An In silico Study10
A-RFP: An Adaptive Residue Flexibility Prediction Method Improving Protein-ligand Docking Based on Homologous Proteins10
Identification of Membrane Protein Types Based Using Hypergraph Neural Network9
Bioinformatics Tools and Databases for Genomics-assisted Breeding and Population Genetics of Plants: A Review9
Identification of Potential Immune-related Biomarkers in Gastrointestinal Cancers9
Early Prediction of Malignant Mesothelioma: An Approach Towards Non-invasive Method9
Evaluation of Current Trends in Biomedical Applications Using Soft Computing9
Diabetes Induced Factors Prediction Based on Various Improved Machine Learning Methods9
A Systematic Review of the Application of Machine Learning in CpG Island (CGI) Detection and Methylation Prediction9
LPLSG: Prediction of lncRNA-protein Interaction Based on Local Network Structure9
Inferring the Functional Effect of Gene-body H3K79me2 Signals in Normal Samples on Gene Expression Changes: A Potential Susceptibility Marker in Chronic Myelogenous Leukemia9
Detection of DNA N6-Methyladenine Modification through SMRT-seq Features and Machine Learning Model9
Biomarkers Identification of Hepatocellular Carcinoma Based on Multiomics Data Integration and Graph-embedded Deep Neural Network8
QLDTI: A Novel Reinforcement Learning-based Prediction Model for Drug-Target Interaction8
Prediction of lncRNA-disease Associations Based on Robust Multi-label Learning8
Detection of Stage-wise Biomarkers in Lung Adenocarcinoma Using Multiplex Analysis8
Multivariate Information Fusion for Identifying Antifungal Peptides with Hilbert-Schmidt Independence Criterion8
Prediction of Off-Target Effects in CRISPR/Cas9 System by Ensemble Learning8
Translation of Circular RNAs: Functions of Translated Products and Related Bioinformatics Approaches8
Investigation of LncRNAs Expression as a Potential Biomarker in the Diagnosis and Treatment of Human Brucellosis8
DNA Binding Protein Prediction based on Multi-feature Deep Metatransfer Learning7
Bioluminescent Proteins Prediction with Voting Strategy7
Development and Study of a Knowledge Graph for Retrieving the Relationship Between BVDV and Related Genes7
Decoding the Genetic Code: Scientific Exploration of the Telomere-totelomere (T2T) Genome7
iTSP-PseAAC: Identifying Tumor Suppressor Proteins by Using Fully Connected Neural Network and PseAAC7
NLP-MeTaxa: A Natural Language Processing Approach for Metagenomic Taxonomic Binning Based on Deep Learning7
A Skin Cancer Detector Based on Transfer Learning and Feature Fusion7
A Review: Computational Approaches to Design sgRNA of CRISPR-Cas97
DILI-Stk: An Ensemble Model for the Prediction of Drug-induced Liver Injury of Drug Candidates7
Intelligent Techniques Analysis for Glycosylation Site Prediction7
Deep Learning for Clustering Single-cell RNA-seq Data7
Identification and Analysis of Plant miRNAs: Evolution of In-silico Resources and Future Challenges7
voomSOM: voom-based Self-Organizing Maps for Clustering RNASequencing Data6
iPSI(2L)-EDL: a Two-layer Predictor for Identifying Promoters and their Types based on Ensemble Deep Learning6
Inferring Gene Regulatory Networks from Single-Cell Time-Course Data Based on Temporal Convolutional Networks6
Identification of Spatial Domains, Spatially Variable Genes, and Genetic Association Studies of Alzheimer Disease with an Autoencoder-based Fuzzy Clustering Algorithm6
Toxicity Prediction for Immune Thrombocytopenia Caused by Drugs Based on Logistic Regression with Feature Importance6
Decoding Seven Basic Odors by Investigating Pharmacophores and Molecular Features of Odorants6
Evaluating the Reliability of Machine Learning Predictors in m6A-SNP Association Analysis: A Comparative Study Using m6A-QTL Data6
Transformer-based Named Entity Recognition for Clinical Cancer Drug Toxicity by Positive-unlabeled Learning and KL Regularizers6
Advanced Multivariable Statistical Analysis Interactive Tool for Handling Missing Data and Confounding Covariates for Label-free LC-MS Proteomics Experiments6
Biopanning Data Bank 2023: Updating and New Findings6
Optimized Hybrid Deep Learning for Real-Time Pandemic Data Forecasting: Long and Short-Term Perspectives6
Network Subgraph-based Method: Alignment-free Technique for Molecular Network Analysis6
Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks6
An Overview of Abdominal Multi-organ Segmentation5
Scaling Method for Batch Effect Correction of Gene Expression Data Based on Spectral Clustering5
A Pan-cancer Analysis Reveals the Tissue Specificity and Prognostic Impact of Angiogenesis-associated Genes in Human Cancers5
Construction of Anatomical Structure-specific Developmental Dynamic Networks for Human Brain on Multiple Omics Levels5
Extracting Gradual Rules to Reveal Regulation Between Genes5
Virtual Screening of Acetylcholinesterase Inhibitors Based on Machine Learning Combined with Molecule Docking Methods5
Long Non-coding RNAs in Heart Failure: A Deep Belief Network Based Cluster Analysis5
A Novel Machine-learning Model to Classify Schizophrenia Using Methylation Data Based on Gene Expression5
Continual Cough: Experience and Lessons from a Case of Bronchial Adenoid Cystic Carcinoma5
SNPs of Metabolic Syndrome are Associated with Benign Prostatic Hyperplasia Development and Progression in Chinese Population5
A Review of DNA Data Storage Technologies Based on Biomolecules5
TumorDet: A Breast Tumor Detection Model Based on Transfer Learning and ShuffleNet5
Identification of Genomic Islands in Synechococcus sp. WH8102 Using Genomic Barcode and Whole-Genome Microarray Analysis5
Artificial Intelligence in Diabetes Mellitus Prediction: Advancements and Challenges - A Review5
Withdrawal Notice: Identification of Five Hub Genes Associated with Progression Development and Prognosis of Lung Adenocarcinoma Identified by Co-expression Analysis5
Multi-label Learning for the Diagnosis of Cancer and Identification of Novel Biomarkers with High-throughput Omics5
A Novel Feature Selection Method Based on MRMR and Enhanced Flower Pollination Algorithm for High Dimensional Biomedical Data5
Meet the Editorial Board Member5
Review of the Applications of Deep Learning in Bioinformatics5
An Efficient Multiple Kernel Support Vector Regression Model for Assessing Dry Weight of Hemodialysis Patients5
Expression Profiles and Bioinformatics Analysis of Full-length circRNA Isoforms in Gliomas4
Potentiality of Risk SNPs Identification Based on GSP Theory4
Deep Learning in Disease Diagnosis: Models and Datasets4
Precision Medicine on Chronic Disease Based on Bioinformatics and Computational Biology4
Identifying Critical States of Hepatocellular Carcinoma Based on Single- Sample Dynamic Network Biomarkers Combined with Simulated Annealing Algorithm4
Acknowledgement to Reviewers4
Predicting Interactions Between Pathogen and Human Proteins Based on the Relation Between Sequence Length and Amino Acid Composition4
Analysis of the Salivary Microbiome in the Periodontal Disease Patients with Hypertension and Non-hypertension4
Explainable Artificial Intelligence for Protein Function Prediction: A Perspective View4
Machine Learning Applications in the Study of Parkinson’s Disease: A Systematic Review4
Meet the Section Editor4
Transcriptome Analysis Reveals Possible Virulence Factors of Paragonimus proliferus4
Tensor Decomposition Based on Global Features and Sparse Structure for Analyzing Cancer Multiomics Data4
Bioinformatics Analysis Reveals Centromere Protein K Can Serve as Potential Prognostic Biomarker and Therapeutic Target for Non-small Cell Lung Cancer4
Identification of Hub Genes in Neuropathic Pain-induced Depression4
SpBLRSR: Schatten p-norm Constrained Bounded Low-rank Subspace Recovery for Predicting N7-methylguanosine (m7G)-disease Associations4
Screening Analysis of Predictive Markers for Cytokine Release Syndrome Risk in CAR-T Cell Therapy4
Advances in Peptide/Protein Structure Prediction Tools and their Relevance for Structural Biology in the Last Decade4
A Simple and Practical microRNA-based Nomogram to Predict Metastatic HCC4
Multinomial Logistic Regression with Adaptive Regularization for Cancer Subtype Classification via Multi-omics Data4
Biomarker Identification for Liver Hepatocellular Carcinoma and Cholangiocarcinoma Based on Gene Regulatory Network Analysis4
Analysis of Novel Variants Associated with Three Human Ovarian Cancer Cell Lines4
Novel Gene Signatures for Prostate Cancer Detection: Network Centralitybased Screening with Experimental Validation4
A Machine Learning-based Self-risk Assessment Technique for Cervical Cancer4
0.050889015197754