OOIR: Observatory of International Research

Papers

(The TQCC of Protein Journal is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Structure-Based Identification of Potential Drugs Against FmtA of Staphylococcus aureus: Virtual Screening, Molecular Dynamics, MM-GBSA, and QM/MM	59
Production of Industrial Enzymes via Pichia pastoris as a Cell Factory in Bioreactor: Current Status and Future Aspects	50
Protein Structure Prediction: Conventional and Deep Learning Perspectives	46
In Silico Evaluation of Prospective Anti-COVID-19 Drug Candidates as Potential SARS-CoV-2 Main Protease Inhibitors	41
A Journey with LGMD: From Protein Abnormalities to Patient Impact	27
A Biochemical Perspective of the Nonstructural Proteins (NSPs) and the Spike Protein of SARS CoV-2	23
Protein–Protein Docking: Past, Present, and Future	22
Separation of Storage Proteins (7S and 11S) from Soybean Seed, Meals and Protein Isolate Using an Optimized Method Via Comparison of Yield and Purity	18
Comparison of Binding Site of Remdesivir and Its Metabolites with NSP12-NSP7-NSP8, and NSP3 of SARS CoV-2 Virus and Alternative Potential Drugs for COVID-19 Treatment	15
Enzymes for Efficient CO2 Conversion	15
Bioactive Molecules Derived from Snake Venoms with Therapeutic Potential for the Treatment of Thrombo-Cardiovascular Disorders Associated with COVID-19	14
The Formation of Native Disulfide Bonds: Treading a Fine Line in Protein Folding	14
Milk Peptides as Novel Multi‐Targeted Therapeutic Candidates for SARS-CoV2	13
Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective	11
Proteomic Profile of Sperm in Infertile Males Reveals Changes in Metabolic Pathways	11
UMAP-DBP: An Improved DNA-Binding Proteins Prediction Method Based on Uniform Manifold Approximation and Projection	11
A Review of Functional Characterization of Single Amino Acid Change Mutations in HNF Transcription Factors in MODY Pathogenesis	11
The Structure Biology of Tau and Clue for Aggregation Inhibitor Design	11
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis	9
Synthesis and Characterization of Novel Chickpea Protein Hydrolysate-Vanadium Complexes Having Cell Inhibitory Effects on Lung Cancer A549 Cells Lines	9
Bacteriophage Endolysin: A Powerful Weapon to Control Bacterial Biofilms	9
Proteomic Analysis of Extracellular Vesicles Derived from MDA-MB-231 Cells in Microgravity	8
Fibrinolytic and ACE Inhibitory Activity of Nattokinase Extracted from Bacillus subtilis VITMS 2: A Strain Isolated from Fermented Milk of Vigna unguiculata	8
Expression, Purification and Characterization of a ZIP Family Transporter from Desulfovibrio vulgaris	8
Protein Production and Purification of a Codon-Optimized Human NGN3 Transcription Factor from E. coli	8

Jasplakinolide Attenuates Cell Migration by Impeding Alpha-1-syntrophin Protein Phosphorylation in Breast Cancer Cells	8
Recombinant Production and Characterization of an Extracellular Subtilisin-Like Serine Protease from Acinetobacter baumannii of Fermented Food Origin	8
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye1	8
Expression and Purification of a Recombinant Enterotoxin Protein Using Different E. coli Host Strains and Expression Vectors	8
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function	7
Structure Analysis of Proteins and Peptides by Difference Circular Dichroism Spectroscopy	7
Proteomic Characterization and Target Identification Against Streptococcus mutans Under Bacitracin Stress Conditions Using LC–MS and Subtractive Proteomics	7
Expression of Codon-Optimized Gene Encoding Murine Moloney Leukemia Virus Reverse Transcriptase in Escherichia coli	7
Purification and Characterization of Trehalase From Acyrthosiphon pisum, a Target for Pest Control	7
Role of ionic liquids on stabilization of therapeutic proteins and model proteins	6
Targeting the Autophagy Specific Lipid Kinase VPS34 for Cancer Treatment: An Integrative Repurposing Strategy	6
Microalgal Bioprocess Toward the Production of Microalgal Oil Loaded Bovine Serum Albumin Nanoparticles	6
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants	6
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes	6
Update and Potential Opportunities in CBP [Cyclic Adenosine Monophosphate (cAMP) Response Element-Binding Protein (CREB)-Binding Protein] Research Using Computational Techniques	6
Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus	5
Structure of Yak Lactoperoxidase at 1.55 Å Resolution	5
Oxidative Damage? Not a Problem! The Characterization of Humanin-like Mitochondrial Peptide in Anoxia Tolerant Freshwater Turtles	5
Bioactive Phytocompounds: Anti-amyloidogenic Effects Against Hen Egg-White Lysozyme Aggregation	5
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase	5
A Trade-off Between Thermostability and Binding Affinity of Anti-(4-hydroxy-3-nitrophenyl)Acetyl Antibodies During the Course of Affinity Maturation	5
In Silico Study of Mutational Stability of SARS-CoV-2 Proteins	5
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles	5
Key Challenges of Microbial Degradation of Keratinous Wastes	5
Identification and Heterologous Production of a Lipase from Geobacillus kaustophilus DSM 7263T and Tailoring Its N-Terminal by a His-Tag Epitope	5
Comparative Analyses of Human Exosome Proteomes	5
Integrated In Silico-In Vitro Identification and Optimization of Bone Morphogenic Protein-2 Armpit Epitope as Its Antagonist Binding Site	5
Improved 3-D Protein Structure Predictions using Deep ResNet Model	4
Recombinant Production and Biochemical Characterization of Thermostable Arabinofuranosidase from Acidothermophilic Alicyclobacillus Acidocaldarius	4
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling	4
Antineoplastic Effects and Mechanisms of a New RGD Chimeric Peptide from Bullfrog Skin on the Proliferation and Apoptosis of B16F10 Cells	4
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-695	4
Evolution of Stronger SARS-CoV-2 Variants as Revealed Through the Lens of Molecular Dynamics Simulations	4
Royal Jelly Proteins Inhibit Macrophage Proliferation: Interactions with Native- and Oxidized-Low Density Lipoprotein	4
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations	4
Interaction of Native- and Oxidized-Low-Density Lipoprotein with Human Estrogen Sulfotransferase	4
Soluble Expression and Catalytic Properties of Codon-Optimized Recombinant Bromelain from MD2 Pineapple in Escherichia coli	4
Heterologous Expression and Partial Characterization of a New Alanine Dehydrogenase from Amycolatopsis sulphurea	4
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production	4
An update on Glycerophosphodiester Phosphodiesterases; From Bacteria to Human	3
Residue Interaction Network Analysis Predicts a Val24–Ile31 Interaction May be Involved in Preventing Amyloid‐Beta (1–42) Primary Nucleation	3
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics	3
Immobilization of the Bacillus licheniformis α-Amylase on Azole Functionalized Nanoparticle: More Active, Stable, and Usability	3
Synthesis and Characterisation of Chickpea Peptides-Zinc Chelates Having ACE2 Inhibitory Activity	3
Modeling and Experimental Validation of Algorithms for Maximum Quantity of Protein to be Immobilized on Solid Supports by Electrostatic Adsorption in the Strategy of Rational Design of Immobilized Der	3
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations	3
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel	3
A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lact	3
Ligand Based Virtual Screening Using Self-organizing Maps	3
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis	3

Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis	3
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis	3
Protein Analysis of Pollen Tubes after the Treatments of Membrane Trafficking Inhibitors Gains Insights on Molecular Mechanism Underlying Pollen Tube Polar Growth	3
Computer-Aided Multi-Epitope Based Vaccine Design Against Monkeypox Virus Surface Protein A30L: An Immunoinformatics Approach	3
Development of Hemagglutinin–Neuraminidase Homologous Peptides as Novel Promising Therapeutic Agents Against Peste des Petits Ruminants Virus	3
Rifampicin Increases Expression of Plant Codon-Optimized Bacillus thuringiensis δ-Endotoxin Genes in Escherichia coli	3
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase	3
Expression and purification of recombinant human CCL5 and its biological characterization	3
Extracellular Oxidase from the Neonothopanus nambi Fungus as a Promising Enzyme for Analytical Applications	3
Design of an Epitope-Based Peptide Vaccine Against the Major Allergen Amb a 11 Using Immunoinformatic Approaches	3
Consideration on Efficient Recombinant Protein Production: Focus on Substrate Protein-Specific Compatibility Patterns of Molecular Chaperones	3
Estrogen Sulfotransferase is Highly Expressed in Vascular Endothelial Cells Overlying Atherosclerotic Plaques	3
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network	3
Immunosuppressive Cyclotides: A Promising Approach for Treating Autoimmune Diseases	3
Exploration of Serum Marker Proteins in Mice Induced by Babesia microti Infection Using a Quantitative Proteomic Approach	3
Protein Kinases and their Inhibitors Implications in Modulating Disease Progression	3
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration	3