Protein Journal

Article	Citations
The Proteostasis of Thymic Stromal Cells in Health and Diseases	27
Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis	18
Infrared Spectral Patterns of Thyroglobulin Bearing Thyroiditogenic Epitopes	17
Utilisation of Carbon Quantum Dots from Hazelnut Husk for Folic Acid (FA) Detection: An Innovative Approach	15
Involvement of the non-active site Residues in the Catalytic Activity of NDM-4 Metallo beta-lactamase	14
Up-Regulated Proteins Have More Protein–Protein Interactions than Down-Regulated Proteins	14
Structural Changes of Apolipoprotein A-I Caused by Hydroxyethyl Starch 130/0.4 Reveals Potential Toxic Mechanisms	14
Effect of Organic Solvents on the Activity, Stability and Secondary Structure of asclepain cI, Using FTIR and Molecular Dynamics Simulations	13
Rational Design, Synthesis, and Computational Investigation of Dihydropyridine [2,3-d] Pyrimidines as Polyphenol Oxidase Inhibitors with Improved Potency	13
Impression of Insect’s Proteolytic Enzyme Cocoonase and Its Application: A Comprehensive Review	13
Identification of Potential RNAi Targets for Cotton Mealybug (Phenacoccus solenopsis Tinsley) Management	12
Crystal Structure of a Thioredoxin-like Ferredoxin Encoded Within a Cobalamin Biosynthetic Operon of Rhodobacter capsulatus	12
Thermodynamic Evolution of a Metamorphic Protein: A Theoretical-Computational Study of Human Lymphotactin	11
Identification of Alternatively Spliced Novel Isoforms of Human HSPB8 Gene	11
Kennedy Epitope (KE)-dependent Retrograde Transport of Efficiently Cleaved HIV-1 Envelopes (Envs) and its Effect on Env Cell Surface Expression and Viral Particle Formation	11
A New Combination: Anti Glypican-3 scFv and Diphtheria Toxin with the Best Flexible Linker	10
N-Linked Glycoproteome Analysis of Diosorea alata Tuber Shows Atypical Glycosylation and Indicates Central Role of Glycosylated Proteins in Tuber Maturation	10
Toxoplasma Gondii Importin α Shows Weak Auto-Inhibition	10
Inhibition of Listeria Monocytogenes HtrA Protease with Camostat, Gabexate and Nafamostat Mesylates and the Binding Mode of the Inhibitors	9
Physicochemical Characterization and In Vitro Digestibility Study of an In Silico Designed Recombinant Protein Enriched with Large Neutral Amino Acids and Lacking Phenylalanine for Phenylketonuria	9
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis	9
Selection and Molecular Response of AHL-lactonase (aiiA) Producing Bacillus sp. Under Penicillin G-induced Conditions	9
Strategic Approaches for Overcoming Peptide and Protein Drug Limitations	9
Heterologous Production of Antimicrobial Peptides: Notes to Consider	9
Unraveling the interaction between a glycolytic regulator protein EhPpdk and an anaphase promoting complex protein EhApc10: yeast two hybrid screening, in vitro binding assays and molecular simulation	8

Soluble Expression of Antimicrobial Peptide BSN-37 from Escherichia coli by SUMO Fusion Technology	8
Delineation of Recombinant Cestode Phosphoenolpyruvate Carboxykinase Activity Co-expressed with Molecular Chaperones	8
Domain Shuffling and Site-Saturation Mutagenesis for the Enhanced Inhibitory Potential of Amaranthaceae α-Amylase Inhibitors	8
Expression and purification of recombinant human CCL5 and its biological characterization	7
Multiple Protein Profiler 1.0 (MPP): A Webserver for Predicting and Visualizing Physiochemical Properties of Proteins at the Proteome Level	7
gmXtal: Cooking Crystals with GROMACS	7
A Novel Glucose-6-Phosphate Isomerase Exists in Chicken Breast Meat: A Selenium-Containing Enzyme that Should Be Re-recognized Through New Eyes	7
Proteomic Analysis of Serum Samples in Ovulatory Polycystic Ovary Syndrome and Construction of a Protein Interaction Pathway	7
Ferguson Plot Analysis of Chaperone ClpB from Moderate Halophile	7
Prediction of Solubility of Proteins in Escherichia coli Based on Functional and Structural Features Using Machine Learning Methods	7
Endoplasmic Reticulum Stress: Implications in Diseases	7
Use of 2D FFT and DTW in Protein Sequence Comparison	7
A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions	7
Role of ionic liquids on stabilization of therapeutic proteins and model proteins	7
Methylglyoxal-Induced Modification of Hen Egg White Lysozyme: Detection of Advanced Glycation End Products by High Resolution Mass Spectrometry	7
Engineering Human Pancreatic RNase 1 as an Immunotherapeutic Agent for Cancer Therapy Through Computational and Experimental Studies	7
Live Cell Protein Imaging of Tandem Complemented-GFP11-Tagged Coiled-Coil Domain-Containing Protein-124 Identifies this Factor in G3BP1-Induced Stress-Granules	6
Next Generation Sequencing for Potential Regulated Genes and Micro-RNAs of Early Growth Response-1 in the Esophageal Squamous Cell Carcinoma	6
Antemortem Stress Regulates Postmortem Glycolysis in Muscle by Deacetylation of Pyruvate Kinase M1 at K141	6
Production Enhancement of Surface-Expressed D-hydantoinase and D-carbamoylase in E. Coli by Developing a Novel Coculture Process for the Efficient Biotransformation of D-p-hydroxyphenylglycine	6
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase	6
SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii	6
GCMS and Molecular Docking Based Insights into the Antifungal Potential of Bacillus Bs-06 Against Fusarium oxysporum f. sp. lycopersici	6
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel	6
Editor-in-Chief’s Introduction	5
A Novel C-Terminal Small Tail Provides Thermostability of FeSOD Implying a New Mechanism of Protein Heat Resistance	5
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production	5
Challenges in Serum Albumin Measurements: A Comparative Study of the Bromocresol Green and the Capillary Zone Electrophoretic Method	5
Exploring Wheat Leaf Urease for a Sustainable Approach: Purification, Kinetics, and Thermal Stability Characterization	5
On the Path to Optimal Alchemistry	5
A Machine Learning Approach to Identify C Type Lectin Domain (CTLD) Containing Proteins	5
Investigating the Protective Role of Biochaga Drug on Structural Changes of Bovine Serum Albumin in the Presence of Methyl tert-butyl Ether	5
Identification of Protein–Protein Interaction Associated Functions Based on Gene Ontology	5
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-695	5
Amine Group Surface-Functionalized Carbon Quantum Dots Exhibit Anti-amyloidogenic Effects Towards Hen Egg White Lysozyme by Inducing Formation of Nontoxic Spherical Aggregates	5
Mechanistic In-Silico Insights into the Anti-quorum Sensing Potential of Coumaric Acid and Syringic Acid in Serratia marcescens with Invitro Analysis	5
Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN)	5
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics	4
Targeting Aminoglycoside Acetyltransferase Activity of Mycobacterium tuberculosis (H37Rv) Derived Eis (Enhanced Intracellular Survival) Protein with Quercetin	4
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles	4
Unveiling the Immunostimulatory Potential of the HSPA1A Mini-Chaperones Compared to the HSPA1A and HSP27 Chaperones: In Silico and In Vitro Insights for Vaccine Development	4
Equilibrium Between Dimeric and Monomeric Forms of Human Epidermal Growth Factor is Shifted Towards Dimers in a Solution	4
A Non-competitive Serpin-Like Thrombin Inhibitor Isolated from Moringa oleifera Exhibit a High Affinity for Thrombin	4
Molecular and Enzymatic Characterization of 9-Cis-epoxycarotenoid Dioxygenases from Mulberry	4
Inhibitor Action of Unsaturated Fatty Acids on Equine Serum Butyrylcholinesterase	4
Enhanced Substrate Specificity of Thermostable Cytochrome P450 CYP175A1 by Site Saturation Mutation on Tyrosine 68	4
Exploring Acoustic Detection of α-Synuclein Fibrils	4
Simulations of Amyloid-Forming Peptides in the Crystal State	4
The complex landscape of intracellular signalling in protein modification under hyperglycaemic stress leading to metabolic disorders	4
An update on Glycerophosphodiester Phosphodiesterases; From Bacteria to Human	4

Probing Dual Covalent Irreversible Inhibition of EGFR/FGFR4 by Electrophilic-Based Natural Compounds to Overcome Resistance and Enhance Combination Therapeutic Potentials and Management of Hepatocellu	4
Rational Design and Production of Bioactive Analogs of Recombinant Human Keratinocyte Growth Factor (rhKGF) with Reduced Aggregation Propensity	4
Role Transformation of HSPA8 to Heme-peroxidase After Binding Hemin to Catalyze Heme Polymerization	4
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis	4
Chemical Modification of the Amino Groups of Human Insulin: Investigating Structural Properties and Amorphous Aggregation of Acetylated Species	4
Interaction of Cecropin A (1–7) Analogs with DNA Analyzed by Multi-spectroscopic Methods	4
Evaluating the Structural Stability of Recombinant Rotavirus Capsid Protein VP6 in Altered Physicochemical States Using Fluorescence and CD Spectroscopy	3
Lipid Transfer Proteins (LTPs) Partially Purified from Capsicum chinense Jacq. Seeds: Antifungal Properties and α-amylase Inhibitory Activity	3
Effects of Heavy Metal Stress on Seedling Growth and Antioxidant System in Sorghum (Sorghum Bicolor (L.) Moench)	3
Comparative Analyses of Human Exosome Proteomes	3
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling	3
Advantages and Limitations of AlphaFold in Structural Biology: Insights from Recent Studies	3
Expression of Recombinant Tissue Plasminogen Activator - Plasminogen Activator Inhibitor Complex in Mammal Cells as Quality Control Materials in Immunoassay	3
The Magical Power of Water: A Reminiscence of Herman Johan Christiaan Berendsen	3
Expression of Recombinant Stonustoxin Alpha Subunit and Preparation of polyclonal antiserum for Stonustoxin Neutralization Studies	3
Design and Analysis of a Mutant form of the Ice-Binding Protein from Choristoneura fumiferana	3
Significance of Sequence Features in Classification of Protein–Protein Interactions Using Machine Learning	3
Correction: From Crude Extracts to Purity: A Comparative Study of Butyrylcholinesterase Purification	3
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration	3
Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants	3
Metal Ions Bound to Prion Protein Affect its Interaction with Plasminogen Activation System	3
Combining Cryo-EM with Computational Approaches To Revolutionize Structural Biology	3
Herman Berendsen and Water: Personal Memories	3
The Role of a Loop in the Non-catalytic Domain B on the Hydrolysis/Transglycosylation Specificity of the 4-α-Glucanotransferase from Thermotoga maritima	3
α-proton Chemical Shift Index and Amide Proton Chemical Shift Temperature Coefficient of Melittin in Methanol: Indicators for a Helix Structure and an Intra-Molecular Hydrogen Bond?	3
Discovery of New Dual-Target Agents Against PPAR-γ and α-Glucosidase Enzymes with Molecular Modeling Methods: Molecular Docking, Molecular Dynamic Simulations, and MM/PBSA Analysis	3
The Investigation of the Subtle Structural Discrepancies between Oryza Sativa Recombinant and Plasma-Derived Human Serum Albumins to Design a Novel Nanoparticle as a Taxane Delivery System	3
Herman Berendsen, a Decisive Factor in My Life	3
Structural and Biochemical Studies on Klebsiella Pneumoniae Enoyl-ACP Reductase (FabI) Suggest Flexible Substrate Binding Site	2
Microenzymes: Is There Anybody Out There?	2
A Significant Difference in Core PDZ Interactivity of SARS-CoV, SARS-CoV2 and MERS-CoV Protein E Peptide PDZ Motifs In Vitro	2
Molecular Insights of an Avian Species with Low Oxygen Affinity, the Crystal Structure of Duck T-State Methemoglobin	2
Improvement of α-amino Ester Hydrolase Stability via Computational Protein Design	2
Herman Berendsen’s NMR Research in Groningen and Some Memories from a Fan	2
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations	2
Synthesis and Characterisation of Chickpea Peptides-Zinc Chelates Having ACE2 Inhibitory Activity	2
Tartrate Dehydrogenase in Bacillus Species: Deciphering Unique Catalytic Diversity Through Kinetic, Structural and Molecular Docking Analysis	2
Molecular Cloning, Expression and Enzymatic Characterization of Tetrahymena thermophila Glutathione-S-Transferase Mu 34	2
Understanding the Necessity of Regulatory Protein Machinery in Heterologous Expression of Class-III Type of Ocins	2
An Analysis of Intrinsic Protein Disorder in Antimicrobial Peptides	2
The Regulation of TDP-43 Structure and Phase Transitions: A Review	2
Unravelling the Significance of Seed Proteomics: Insights into Seed Development, Function, and Agricultural Applications	2
Improved Antimicrobial Activity of Bovine Lactoferrin Peptide (LFcinB) Based on Rational Design	2
Expression and Purification of p70 (∆NH2-146/∆CT104) S6 K, a 57.3 kDa N- and C-Terminal Truncated p70S6 Kinase-GST Fusion Protein in Bacterial Expression System	2
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis	2
Biochemical Characterization of Laccase from Spirulina CPCC-695 and Their Role in Estrone Degradation	2
Influence of Cataract Causing Mutations on αA-Crystallin: A Computational Approach	2
How Azide Ion/Hydrazoic Acid Passes Through Biological Membranes: An Experimental and Computational Study	2
Refolding, Crystallization, and Crystal Structure Analysis of a Scavenger Receptor Cysteine-Rich Domain of Human Salivary Agglutinin Expressed in Escherichia coli	2
The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein	2
Non-ionic Detergent-Assisted Refolding of Protein from Protein-SDS Complex	2
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis	2
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase	2
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye1	2
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function	2
Exosomes with Engineered Brain Derived Neurotrophic Factor on Their Surfaces Can Proliferate Menstrual Blood Derived Mesenchymal Stem Cells: Targeted Delivery for a Protein Drug	2
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants	2
Herman J. C. Berendsen	2
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network	2
Protein S-Nitrosylation: A Chemical Modification with Ubiquitous Biological Activities	2
Computational Insight into Substrate-Induced Conformational Changes in Methionyl-tRNA Synthetase of Mycobacterium Tuberculosis	2
Fred W. McLafferty: The Man Who Drove a Different Kind of Flying Machine	2
Functional and Structural Insights into Phenoloxidase from Hermetia illucens: A Combined Biochemical and Computational Approach	1
Effect of Mutations on the Evolution of Extended Spectrum β-lactamases (ESBL)	1
Design of an Epitope-Based Peptide Vaccine Against the Major Allergen Amb a 11 Using Immunoinformatic Approaches	1
Multi-scale In Silico and Biochemical Evaluation of Natural Bisbenzylisoquinoline Alkaloids as Aldose Reductase Inhibitors	1
Proteomic Analysis Reveals Differential Protein Expression Induced by Inhibition of Prolyl Oligopeptidase in Filarial Parasites	1
The Structural Features of MlaD Illuminate its Unique Ligand-Transporting Mechanism and Ancestry	1
Efficient Expression in the Prokaryotic Host System, Purification and Structural Analyses of the Recombinant Human ACE2 Catalytic Subunit as a Hybrid Protein with the B Subunit of Cholera Toxin (CTB-A	1
Recent Advancements in Biosensors for the Detection and Characterization of Amyloids: A Review	1
Metal Dependent Glycosidases of Sea Cucumber Eupentacta Fraudatrix and their Properties	1
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations	1
Herman Berendsen, an Unforgettable Man	1
Unravelling the Phosphorylation Landscape of Anthrax Toxin Receptor 1: Mechanisms and Functional Insights Through Phosphoproteomic Data Integration	1
A Novel Trypsin Kunitz-Type Inhibitor from Cajanus cajan Leaves and Its Inhibitory Activity on New Cancer Serine Proteases and Its Effect on Tumor Cell Growth	1
Conjugation with the Carrier Helped to Reveal acidification-Induced Structural Shift in the Peptide from Phospholipase Domain of Parvovirus B19	1
Expression of Xanthorhodopsin in Escherichia coli	1
Dual Antimicrobial and Anticancer Activity of Membrane-Active Peptide BP52	1
Multi-catalytic Sites Inhibition of Bcl2 Induces Expanding of Hydrophobic Groove: A New Avenue Towards Waldenström Macroglobulinemia Therapy	1
Biophysical Characterization of p51 and p66 Monomers of HIV-1 Reverse Transcriptase with Their Inhibitors	1

Site-Directed Mutation of Salicylate Decarboxylase Gene and Mechanism of Ginkgo Acid Decarboxylation	1
Selective Attachment of Polyethylene Glycol to Hemerythrin for Potential Use in Blood Substitutes	1
Analyzing VEGFA/VEGFR1 Interaction: Application of the Resonant Recognition Model-Stockwell Transform Method to Explore Potential Therapeutics for Angiogenesis-Related Diseases	1
A Comprehensive Review on Machine Learning Techniques for Protein Family Prediction	1
Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis	1
Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH	1
Computer-Aided Multi-Epitope Based Vaccine Design Against Monkeypox Virus Surface Protein A30L: An Immunoinformatics Approach	1
Development of Hemagglutinin–Neuraminidase Homologous Peptides as Novel Promising Therapeutic Agents Against Peste des Petits Ruminants Virus	1
Methotrexate for Drug Repurposing as an Anti-Aggregatory Agent to Mercuric Treated α-Chymotrypsinogen-A	1
Novel Self-Cleaving Affinity Purification Method for Cellular Membrane-Associated Recombinant Paraoxonase-1 (rePON1) Enzyme	1
Functional and Biochemical Analyses of Glycerol Kinase and Glycerol 3-phosphate Dehydrogenase in HEK293 Cells	1
Enzyme Kinetics Features of the Representative Engineered Recombinants of Chondroitinase ABC I	1
Production of Bioactive Human PAX4 Protein from E. coli	1
Molecular, Structural, and Functional Diversity of Universal Stress Proteins (USPs) in Bacteria, Plants, and Their Biotechnological Applications	1
Expression, Purification, and Biophysical Characterization of Klebsiella Pneumoniae Nicotinate Nucleotide Adenylyltransferase	1
Characterization of Cationic Amino Acid Binding Protein from Candidatus Liberibacter Asiaticus and in Silico Study to Identify Potential Inhibitor Molecules	1
Comparison of Periplasmic and Cytoplasmic Expression of Bovine Enterokinase Light Chain in E. coli	1
Comparative Characterization of Plasmodium falciparum Small Heat Shock Proteins and Their Inhibition by Quercetin (3,3′,4′,5,7-Pentahydroxyflavone)	1
Bacteriophage Endolysin: A Powerful Weapon to Control Bacterial Biofilms	1
Decoding the Structure–Function Relationship of the Muramidase Domain in E. coli O157.H7 Bacteriophage Endolysin: A Potential Building Block for Chimeric Enzybiotics	1
A Proteomics Investigation of Salivary Profiles as Potential Biomarkers for Autism Spectrum Disorder (ASD)	1
Propensities of Some Amino Acid Pairings in α-Helices Vary with Length	1
The Impact of Terminal Peptide Extensions of Retinal Inosine 5´Monophosphate Dehydrogenase 1 Isoforms on their DNA-binding Activities	1
Halved but Potent: Exploring the Inhibitory Property of Curcumin Derivatives Against Evolving SARS-CoV-2 Strains	1
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes	1
Characterization of the Three DHFRs and K65P Variant: Enhanced Substrate Affinity and Molecular Dynamics Analysis	1
Expression and Purification of Human Stem Cell Factor and Its Effect on the Growth of A549 Cells	1
Computational and Experimental Approaches Towards Understanding the Role of ATG8 in Autophagy: A Therapeutic Paradigm in Leishmaniasis	1