Protein Journal

Article	Citations
Structure-Based Identification of Potential Drugs Against FmtA of Staphylococcus aureus: Virtual Screening, Molecular Dynamics, MM-GBSA, and QM/MM	59
Production of Industrial Enzymes via Pichia pastoris as a Cell Factory in Bioreactor: Current Status and Future Aspects	50
Protein Structure Prediction: Conventional and Deep Learning Perspectives	46
In Silico Evaluation of Prospective Anti-COVID-19 Drug Candidates as Potential SARS-CoV-2 Main Protease Inhibitors	41
A Journey with LGMD: From Protein Abnormalities to Patient Impact	27
A Biochemical Perspective of the Nonstructural Proteins (NSPs) and the Spike Protein of SARS CoV-2	23
Protein–Protein Docking: Past, Present, and Future	22
Separation of Storage Proteins (7S and 11S) from Soybean Seed, Meals and Protein Isolate Using an Optimized Method Via Comparison of Yield and Purity	18
Enzymes for Efficient CO2 Conversion	15
Comparison of Binding Site of Remdesivir and Its Metabolites with NSP12-NSP7-NSP8, and NSP3 of SARS CoV-2 Virus and Alternative Potential Drugs for COVID-19 Treatment	15
Bioactive Molecules Derived from Snake Venoms with Therapeutic Potential for the Treatment of Thrombo-Cardiovascular Disorders Associated with COVID-19	14
The Formation of Native Disulfide Bonds: Treading a Fine Line in Protein Folding	14
Milk Peptides as Novel Multi‐Targeted Therapeutic Candidates for SARS-CoV2	13
Proteomic Profile of Sperm in Infertile Males Reveals Changes in Metabolic Pathways	11
UMAP-DBP: An Improved DNA-Binding Proteins Prediction Method Based on Uniform Manifold Approximation and Projection	11
A Review of Functional Characterization of Single Amino Acid Change Mutations in HNF Transcription Factors in MODY Pathogenesis	11
The Structure Biology of Tau and Clue for Aggregation Inhibitor Design	11
Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective	11
Synthesis and Characterization of Novel Chickpea Protein Hydrolysate-Vanadium Complexes Having Cell Inhibitory Effects on Lung Cancer A549 Cells Lines	9
Bacteriophage Endolysin: A Powerful Weapon to Control Bacterial Biofilms	9
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis	9
Proteomic Analysis of Extracellular Vesicles Derived from MDA-MB-231 Cells in Microgravity	8
Fibrinolytic and ACE Inhibitory Activity of Nattokinase Extracted from Bacillus subtilis VITMS 2: A Strain Isolated from Fermented Milk of Vigna unguiculata	8
Expression, Purification and Characterization of a ZIP Family Transporter from Desulfovibrio vulgaris	8
Protein Production and Purification of a Codon-Optimized Human NGN3 Transcription Factor from E. coli	8

Jasplakinolide Attenuates Cell Migration by Impeding Alpha-1-syntrophin Protein Phosphorylation in Breast Cancer Cells	8
Recombinant Production and Characterization of an Extracellular Subtilisin-Like Serine Protease from Acinetobacter baumannii of Fermented Food Origin	8
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye1	8
Expression and Purification of a Recombinant Enterotoxin Protein Using Different E. coli Host Strains and Expression Vectors	8
Proteomic Characterization and Target Identification Against Streptococcus mutans Under Bacitracin Stress Conditions Using LC–MS and Subtractive Proteomics	7
Expression of Codon-Optimized Gene Encoding Murine Moloney Leukemia Virus Reverse Transcriptase in Escherichia coli	7
Purification and Characterization of Trehalase From Acyrthosiphon pisum, a Target for Pest Control	7
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function	7
Structure Analysis of Proteins and Peptides by Difference Circular Dichroism Spectroscopy	7
Microalgal Bioprocess Toward the Production of Microalgal Oil Loaded Bovine Serum Albumin Nanoparticles	6
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants	6
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes	6
Update and Potential Opportunities in CBP [Cyclic Adenosine Monophosphate (cAMP) Response Element-Binding Protein (CREB)-Binding Protein] Research Using Computational Techniques	6
Role of ionic liquids on stabilization of therapeutic proteins and model proteins	6
Targeting the Autophagy Specific Lipid Kinase VPS34 for Cancer Treatment: An Integrative Repurposing Strategy	6
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase	5
A Trade-off Between Thermostability and Binding Affinity of Anti-(4-hydroxy-3-nitrophenyl)Acetyl Antibodies During the Course of Affinity Maturation	5
In Silico Study of Mutational Stability of SARS-CoV-2 Proteins	5
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles	5
Key Challenges of Microbial Degradation of Keratinous Wastes	5
Identification and Heterologous Production of a Lipase from Geobacillus kaustophilus DSM 7263T and Tailoring Its N-Terminal by a His-Tag Epitope	5
Comparative Analyses of Human Exosome Proteomes	5
Integrated In Silico-In Vitro Identification and Optimization of Bone Morphogenic Protein-2 Armpit Epitope as Its Antagonist Binding Site	5
Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus	5
Structure of Yak Lactoperoxidase at 1.55 Å Resolution	5
Oxidative Damage? Not a Problem! The Characterization of Humanin-like Mitochondrial Peptide in Anoxia Tolerant Freshwater Turtles	5
Bioactive Phytocompounds: Anti-amyloidogenic Effects Against Hen Egg-White Lysozyme Aggregation	5
Recombinant Production and Biochemical Characterization of Thermostable Arabinofuranosidase from Acidothermophilic Alicyclobacillus Acidocaldarius	4
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling	4
Antineoplastic Effects and Mechanisms of a New RGD Chimeric Peptide from Bullfrog Skin on the Proliferation and Apoptosis of B16F10 Cells	4
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-695	4
Evolution of Stronger SARS-CoV-2 Variants as Revealed Through the Lens of Molecular Dynamics Simulations	4
Royal Jelly Proteins Inhibit Macrophage Proliferation: Interactions with Native- and Oxidized-Low Density Lipoprotein	4
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations	4
Interaction of Native- and Oxidized-Low-Density Lipoprotein with Human Estrogen Sulfotransferase	4
Soluble Expression and Catalytic Properties of Codon-Optimized Recombinant Bromelain from MD2 Pineapple in Escherichia coli	4
Heterologous Expression and Partial Characterization of a New Alanine Dehydrogenase from Amycolatopsis sulphurea	4
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production	4
Improved 3-D Protein Structure Predictions using Deep ResNet Model	4
A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lact	3
Ligand Based Virtual Screening Using Self-organizing Maps	3
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis	3
Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis	3
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis	3
Protein Analysis of Pollen Tubes after the Treatments of Membrane Trafficking Inhibitors Gains Insights on Molecular Mechanism Underlying Pollen Tube Polar Growth	3
Rifampicin Increases Expression of Plant Codon-Optimized Bacillus thuringiensis δ-Endotoxin Genes in Escherichia coli	3
Computer-Aided Multi-Epitope Based Vaccine Design Against Monkeypox Virus Surface Protein A30L: An Immunoinformatics Approach	3
Development of Hemagglutinin–Neuraminidase Homologous Peptides as Novel Promising Therapeutic Agents Against Peste des Petits Ruminants Virus	3
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase	3
Expression and purification of recombinant human CCL5 and its biological characterization	3

Extracellular Oxidase from the Neonothopanus nambi Fungus as a Promising Enzyme for Analytical Applications	3
Design of an Epitope-Based Peptide Vaccine Against the Major Allergen Amb a 11 Using Immunoinformatic Approaches	3
Consideration on Efficient Recombinant Protein Production: Focus on Substrate Protein-Specific Compatibility Patterns of Molecular Chaperones	3
Exploration of Serum Marker Proteins in Mice Induced by Babesia microti Infection Using a Quantitative Proteomic Approach	3
Estrogen Sulfotransferase is Highly Expressed in Vascular Endothelial Cells Overlying Atherosclerotic Plaques	3
Protein Kinases and their Inhibitors Implications in Modulating Disease Progression	3
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network	3
Immunosuppressive Cyclotides: A Promising Approach for Treating Autoimmune Diseases	3
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration	3
An update on Glycerophosphodiester Phosphodiesterases; From Bacteria to Human	3
Residue Interaction Network Analysis Predicts a Val24–Ile31 Interaction May be Involved in Preventing Amyloid‐Beta (1–42) Primary Nucleation	3
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics	3
Immobilization of the Bacillus licheniformis α-Amylase on Azole Functionalized Nanoparticle: More Active, Stable, and Usability	3
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel	3
Synthesis and Characterisation of Chickpea Peptides-Zinc Chelates Having ACE2 Inhibitory Activity	3
Modeling and Experimental Validation of Algorithms for Maximum Quantity of Protein to be Immobilized on Solid Supports by Electrostatic Adsorption in the Strategy of Rational Design of Immobilized Der	3
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations	3
Staphylococcus aureus Bacteriophage 52 Endolysin Exhibits Anti-Biofilm and Broad Antibacterial Activity Against Gram-Positive Bacteria	2
Comparison of Periplasmic and Cytoplasmic Expression of Bovine Enterokinase Light Chain in E. coli	2
Physicochemical Characterization and In Vitro Digestibility Study of an In Silico Designed Recombinant Protein Enriched with Large Neutral Amino Acids and Lacking Phenylalanine for Phenylketonuria	2
N-Linked Glycoproteome Analysis of Diosorea alata Tuber Shows Atypical Glycosylation and Indicates Central Role of Glycosylated Proteins in Tuber Maturation	2
Targeting Aminoglycoside Acetyltransferase Activity of Mycobacterium tuberculosis (H37Rv) Derived Eis (Enhanced Intracellular Survival) Protein with Quercetin	2
Biochemical and Biophysical Characterization of Carbonic Anhydrase VI from Human Milk and Saliva	2
New Insight into the Interactions of Arbutin with Mushroom Tyrosinase	2
Comparative Appraisal of Leaf Proteomic and Mass Spectrometry Analyses During Fusarium Wilt Infection in Resistance and Susceptible Genotypes of Castor (Ricinus communis L.)	2
Fluorescence Determination of Peptidase Activity Based on the Quenching of a Fluorophore-Labelled Peptide by Graphene Oxide	2
Effect of Agitation and Aeration on Keratinase Production in Bioreactors Using Bioprocess Engineering Aspects	2
Significance of Sequence Features in Classification of Protein–Protein Interactions Using Machine Learning	2
Design and Analysis of a Mutant form of the Ice-Binding Protein from Choristoneura fumiferana	2
Heterologous Production of Antimicrobial Peptides: Notes to Consider	2
A Non-competitive Serpin-Like Thrombin Inhibitor Isolated from Moringa oleifera Exhibit a High Affinity for Thrombin	2
Recombinant Production of Bovine Enteropeptidase Light Chain in SHuffle® T7 Express and Optimization of Induction Parameters	2
Effects of Sodium Dodecyl Sulfate on the Enzyme Catalysis and Conformation of a Recombinant γ-Glutamyltranspeptidase from Bacillus licheniformis	2
Purification and Conformational Characterization of a Novel Interleukin-2 Mutein	2
Production of Soluble and Functional Anti-TNF-α Fab' Fragment in Cytoplasm of E. coli: Investigating the Effect of Process Conditions on Cellular Biomass and Protein Yield Using Response Surface Metho	2
Multi-catalytic Sites Inhibition of Bcl2 Induces Expanding of Hydrophobic Groove: A New Avenue Towards Waldenström Macroglobulinemia Therapy	2
Prediction of the Mannose-Binding Site in the Agaricus bisporus Mannose-Binding Protein	2
Chemical Modification of the Amino Groups of Human Insulin: Investigating Structural Properties and Amorphous Aggregation of Acetylated Species	2
A Proteomics Investigation of Salivary Profiles as Potential Biomarkers for Autism Spectrum Disorder (ASD)	2
Equilibrium Between Dimeric and Monomeric Forms of Human Epidermal Growth Factor is Shifted Towards Dimers in a Solution	2
Proteomic Analysis Reveals Differential Protein Expression Induced by Inhibition of Prolyl Oligopeptidase in Filarial Parasites	2
Sequential Dihedral Angles (SDAs): A Method for Evaluating the 3D Structure of Proteins	2
Peptide Models of the Cytoplasmic Tail of Influenza A/H1N1 Virus Hemagglutinin Expand Understanding its pH-Dependent Modes of Interaction with Matrix Protein M1	2
Probing the Interactions Responsible for the Structural Stability of Trypanothione Reductase Through Computer Simulation and Biophysical Characterization	2
A Novel Glucose-6-Phosphate Isomerase Exists in Chicken Breast Meat: A Selenium-Containing Enzyme that Should Be Re-recognized Through New Eyes	2
gmXtal: Cooking Crystals with GROMACS	2
Soluble Expression of Antimicrobial Peptide BSN-37 from Escherichia coli by SUMO Fusion Technology	2
Computational Deciphering of the Role of S100A8 and S100A9 Proteins and Their Changes in the Structure Assembly Influences Their Interaction with TLR4, RAGE, and CD36	1
East to West not North-West: Structure-Based Mechanistic Resolution of 8-Hydroxyl Replacement and Resulting Effects on the Activities of Imidazole-Based Heme Oxygenase-1 Inhibitors	1
The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein	1
Enhanced Biomass Production of Recombinant Pfu DNA Polymerase Producer Escherichia coli BL21(DE3) by Optimization of Induction Variables Using Response Surface Methodology	1
Expression of Xanthorhodopsin in Escherichia coli	1
Molecular and Enzymatic Characterization of 9-Cis-epoxycarotenoid Dioxygenases from Mulberry	1
Neglected N-Truncated Amyloid-β Peptide and Its Mixed Cu–Zn Complexes	1
Editorial: Proteins of SARS CoV-2, the Cause of COVID-19, and the Proteins that Interact with Them	1
Sulfuric Acid and Gibberellic Acid (GA3) Treatment Combined with Exposure to Cold Temperature Modulates Seed Proteins during Breaking of Dormancy to Germination in Tilia miqueliana	1
How Azide Ion/Hydrazoic Acid Passes Through Biological Membranes: An Experimental and Computational Study	1
Involvement of the non-active site Residues in the Catalytic Activity of NDM-4 Metallo beta-lactamase	1
Enhancing recombinant Chaetomium thermophilium Formate Dehydrogenase Expression with CRISPR Technology	1
On the Path to Optimal Alchemistry	1
How Useful can the Voigt Profile be in Protein Folding Processes?	1
Methylglyoxal Induced Modifications to Stabilize Therapeutic Proteins: A Review	1
The Role of a Loop in the Non-catalytic Domain B on the Hydrolysis/Transglycosylation Specificity of the 4-α-Glucanotransferase from Thermotoga maritima	1
Simulations of Amyloid-Forming Peptides in the Crystal State	1
Inhibition of Listeria Monocytogenes HtrA Protease with Camostat, Gabexate and Nafamostat Mesylates and the Binding Mode of the Inhibitors	1
QSSR Modeling of Bacillus Subtilis Lipase A Peptide Collision Cross-Sections in Ion Mobility Spectrometry: Local Descriptor Versus Global Descriptor	1
Expression of Human β-defensin 2 (hBD-2) in Pichia Pastoris and Investigation of Its Binding Efficiency with ACE-2	1
c.1898C>G/p.Ser633Trp Mutation in Alpha-l-Iduronidase: Clinical and Structural Implications	1
A New Combination: Anti Glypican-3 scFv and Diphtheria Toxin with the Best Flexible Linker	1
Cloning, Expression and Characterization of Spore Wall Protein 5 (SWP5) of Indian Isolate NIK-1S of Nosema bombycis	1
Toxoplasma Gondii Importin α Shows Weak Auto-Inhibition	1
Metal Ions Bound to Prion Protein Affect its Interaction with Plasminogen Activation System	1
Enhanced Substrate Specificity of Thermostable Cytochrome P450 CYP175A1 by Site Saturation Mutation on Tyrosine 68	1
α-proton Chemical Shift Index and Amide Proton Chemical Shift Temperature Coefficient of Melittin in Methanol: Indicators for a Helix Structure and an Intra-Molecular Hydrogen Bond?	1
Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis	1
Comparison of in vitro Antifungal Activity Methods Using Extract of Chitinase-producing Aeromonas sp. BHC02	1
Improved Antimicrobial Activity of Bovine Lactoferrin Peptide (LFcinB) Based on Rational Design	1
Functional Analysis of Single Nucleotide Polymorphism in ZUFSP Protein and Implication in Pathogenesis	1
Purified Native Protein Extracted from the Venom of Agelena orientalis Attenuates Memory Defects in the Rat Model of Glutamate-Induced Excitotoxicity	1
Expression, Purification, and Biophysical Characterization of Klebsiella Pneumoniae Nicotinate Nucleotide Adenylyltransferase	1

Pectinase from a Fish Gut Bacterium, Aeromonas guangheii (SS6): Production, Cloning and Characterization	1
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis	1
Protein S-Nitrosylation: A Chemical Modification with Ubiquitous Biological Activities	1
Chemical Digestion of the -Asp-Cys- Sequence for Preparation of Post-translationally Modified Proteins	1
HNF1A-MODY Mutations in Nuclear Localization Signal Impair HNF1A-Import Receptor KPNA6 Interactions	1
Understanding the Necessity of Regulatory Protein Machinery in Heterologous Expression of Class-III Type of Ocins	1
SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii	1
Methotrexate for Drug Repurposing as an Anti-Aggregatory Agent to Mercuric Treated α-Chymotrypsinogen-A	1
Development of a Chimeric Protein BiPPB-mIFNγ-tTβRII for Improving the Anti-Fibrotic Activity in Vivo by Targeting Fibrotic Liver and Dual Inhibiting the TGF-β1/Smad Signaling Pathway	1
Choice of Metric Divergence in Genome Sequence Comparison	1
A Minireview on Temperature Dependent Protein Conformational Sampling	1
Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants	1
Identification of Protein–Protein Interaction Associated Functions Based on Gene Ontology	1
Investigating the Effect of Substituting a Single Cysteine Residue on the Thermal Stability of an Engineered Sweet Protein, Single-Chain Monellin	1
Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN)	1
Update and Supplementary Articles Proteins of SARS CoV-2, Which Causes COVID-19, and the Interacting Proteins	1
"Computational and Functional Characterization of a Hemorrhagic Metalloproteinase Purified from Cerastes cerastes Venom"	1
Up-Regulated Proteins Have More Protein–Protein Interactions than Down-Regulated Proteins	1
A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions	1
The complex landscape of intracellular signalling in protein modification under hyperglycaemic stress leading to metabolic disorders	1
Improvement of α-amino Ester Hydrolase Stability via Computational Protein Design	1
Biochemical Characterization of Laccase from Spirulina CPCC-695 and Their Role in Estrone Degradation	1