Protein Journal

Article	Citations
The Proteins of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS CoV-2 or n-COV19), the Cause of COVID-19	381
Role of Oxidative Stress on SARS-CoV (SARS) and SARS-CoV-2 (COVID-19) Infection: A Review	197
Structure-Based Identification of Potential Drugs Against FmtA of Staphylococcus aureus: Virtual Screening, Molecular Dynamics, MM-GBSA, and QM/MM	46
In Silico Evaluation of Prospective Anti-COVID-19 Drug Candidates as Potential SARS-CoV-2 Main Protease Inhibitors	41
Production of Industrial Enzymes via Pichia pastoris as a Cell Factory in Bioreactor: Current Status and Future Aspects	35
Protein Structure Prediction: Conventional and Deep Learning Perspectives	33
An Overview of the Crystallized Structures of the SARS-CoV-2	30
A Biochemical Perspective of the Nonstructural Proteins (NSPs) and the Spike Protein of SARS CoV-2	22
A Journey with LGMD: From Protein Abnormalities to Patient Impact	20
FTIR Spectroscopy Detects Intermolecular β-Sheet Formation Above the High Temperature Tm for Two Monoclonal Antibodies	19
Anticancer Actions of Azurin and Its Derived Peptide p28	18
Comparison of Binding Site of Remdesivir and Its Metabolites with NSP12-NSP7-NSP8, and NSP3 of SARS CoV-2 Virus and Alternative Potential Drugs for COVID-19 Treatment	15
Protein–Protein Docking: Past, Present, and Future	12
Immobilization of Cellulase onto Core-Shell Magnetic Gold Nanoparticles Functionalized by Aspartic Acid and Determination of its Activity	11
Milk Peptides as Novel Multi‐Targeted Therapeutic Candidates for SARS-CoV2	11
UMAP-DBP: An Improved DNA-Binding Proteins Prediction Method Based on Uniform Manifold Approximation and Projection	11
Separation of Storage Proteins (7S and 11S) from Soybean Seed, Meals and Protein Isolate Using an Optimized Method Via Comparison of Yield and Purity	10
A Review of Functional Characterization of Single Amino Acid Change Mutations in HNF Transcription Factors in MODY Pathogenesis	10
The Formation of Native Disulfide Bonds: Treading a Fine Line in Protein Folding	10
Bacillus sonorensis L. Asparaginase: Cloning, Expression in E. coli and Characterization	10
Enzymes for Efficient CO2 Conversion	10
Bioactive Molecules Derived from Snake Venoms with Therapeutic Potential for the Treatment of Thrombo-Cardiovascular Disorders Associated with COVID-19	9
Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective	9
The Structure Biology of Tau and Clue for Aggregation Inhibitor Design	9
Jasplakinolide Attenuates Cell Migration by Impeding Alpha-1-syntrophin Protein Phosphorylation in Breast Cancer Cells	8

Protein Production and Purification of a Codon-Optimized Human NGN3 Transcription Factor from E. coli	8
Lectin-Like Activity of Hemocyanin in Freshwater Prawn, Macrobrachium rosenbergii	8
Fibrinolytic and ACE Inhibitory Activity of Nattokinase Extracted from Bacillus subtilis VITMS 2: A Strain Isolated from Fermented Milk of Vigna unguiculata	8
Expression and Purification of a Recombinant Enterotoxin Protein Using Different E. coli Host Strains and Expression Vectors	8
Proteomic Profile of Sperm in Infertile Males Reveals Changes in Metabolic Pathways	7
Synthesis and Characterization of Novel Chickpea Protein Hydrolysate-Vanadium Complexes Having Cell Inhibitory Effects on Lung Cancer A549 Cells Lines	7
Effect of Metal Ions on the Activity of Ten NAD-Dependent Formate Dehydrogenases	7
The Last Secret of Protein Folding: The Real Relationship Between Long-Range Interactions and Local Structures	7
Proteomic Analysis of Extracellular Vesicles Derived from MDA-MB-231 Cells in Microgravity	7
Recombinant Production and Characterization of an Extracellular Subtilisin-Like Serine Protease from Acinetobacter baumannii of Fermented Food Origin	6
Purification and Characterization of Trehalase From Acyrthosiphon pisum, a Target for Pest Control	6
Targeting the Autophagy Specific Lipid Kinase VPS34 for Cancer Treatment: An Integrative Repurposing Strategy	6
Structure-Based Immunogenicity Prediction of Uricase from Fungal (Aspergillus flavus), Bacterial (Bacillus subtillis) and Mammalian Sources Using Immunoinformatic Approach	6
Bacteriophage Endolysin: A Powerful Weapon to Control Bacterial Biofilms	6
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis	6
Expression, Purification and Characterization of a ZIP Family Transporter from Desulfovibrio vulgaris	6
Delving into the Characteristic Features of “Menace” Mycobacterium tuberculosis Homologs: A Structural Dynamics and Proteomics Perspectives	6
Isolation and Functional Identification of an Antiplatelet RGD-Containing Disintegrin from Cerastes cerastes Venom	6
Proteomic Characterization and Target Identification Against Streptococcus mutans Under Bacitracin Stress Conditions Using LC–MS and Subtractive Proteomics	5
Biophysical and In-Silico Studies of Phytochemicals Targeting Chorismate Synthase from Drug-Resistant Moraxella Catarrhalis	5
Integrated In Silico-In Vitro Identification and Optimization of Bone Morphogenic Protein-2 Armpit Epitope as Its Antagonist Binding Site	5
Identification and Heterologous Production of a Lipase from Geobacillus kaustophilus DSM 7263T and Tailoring Its N-Terminal by a His-Tag Epitope	5
Purification and Regulation of Pyruvate Kinase from the Foot Muscle of the Anoxia and Freeze Tolerant Marine Snail, Littorina littorea	5
Structure of Yak Lactoperoxidase at 1.55 Å Resolution	5
Oxidative Damage? Not a Problem! The Characterization of Humanin-like Mitochondrial Peptide in Anoxia Tolerant Freshwater Turtles	5
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants	5
Role of ionic liquids on stabilization of therapeutic proteins and model proteins	5
Effects of Distal Mutations on Prolyl-Adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase	5
Microalgal Bioprocess Toward the Production of Microalgal Oil Loaded Bovine Serum Albumin Nanoparticles	5
In Silico Study of Mutational Stability of SARS-CoV-2 Proteins	5
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes	5
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye1	5
Interaction of Native- and Oxidized-Low-Density Lipoprotein with Human Estrogen Sulfotransferase	4
Soluble Expression and Catalytic Properties of Codon-Optimized Recombinant Bromelain from MD2 Pineapple in Escherichia coli	4
Proteomic Analysis of Lipid Droplets in Sesamum indicum	4
Assessment of Protein Profiles of RNAlater Stored and Fresh PBMC Cells Using Different Protein Extraction Buffers	4
Antineoplastic Effects and Mechanisms of a New RGD Chimeric Peptide from Bullfrog Skin on the Proliferation and Apoptosis of B16F10 Cells	4
Trehalose Inhibits the Heat-Induced Formation of the Amyloid-Like Structure of Soluble Proteins Isolated from Human Cataract Lens	4
Insertions and Deletions Play an Important Role in the Diversity of Conotoxins	4
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling	4
Characterization of a Long-Acting Site-Specific PEGylated Murine GM-CSF Analog and Analysis of Its Hematopoietic Properties in Normal and Cyclophosphamide-Treated Neutropenic Rats	4
Random Coils of Proteins Situated Between a Beta Strand and an Alpha Helix Demonstrate Decreased Solvent Accessibility	4
Evolution of Stronger SARS-CoV-2 Variants as Revealed Through the Lens of Molecular Dynamics Simulations	4
Maltose Induced Expression of Cecropin AD by SUMO Technology in Bacillus subtilis WB800N	4
Heterologous Expression and Partial Characterization of a New Alanine Dehydrogenase from Amycolatopsis sulphurea	4
A Trade-off Between Thermostability and Binding Affinity of Anti-(4-hydroxy-3-nitrophenyl)Acetyl Antibodies During the Course of Affinity Maturation	4
Structure Analysis of Proteins and Peptides by Difference Circular Dichroism Spectroscopy	4
Comparative Analyses of Human Exosome Proteomes	3
Update and Potential Opportunities in CBP [Cyclic Adenosine Monophosphate (cAMP) Response Element-Binding Protein (CREB)-Binding Protein] Research Using Computational Techniques	3
Bioactive Phytocompounds: Anti-amyloidogenic Effects Against Hen Egg-White Lysozyme Aggregation	3

Perspective on the Role of Antibodies and Potential Therapeutic Drugs to Combat COVID-19	3
Molecular Characterization of Bacterial Fibrinolytic Proteins from Indonesian Traditional Fermented Foods	3
A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lact	3
Key Challenges of Microbial Degradation of Keratinous Wastes	3
Defense Response in Chickpea Pod Wall due to Simulated Herbivory Unfolds Differential Proteome Profile	3
Design of an Epitope-Based Peptide Vaccine Against the Major Allergen Amb a 11 Using Immunoinformatic Approaches	3
Protein Analysis of Pollen Tubes after the Treatments of Membrane Trafficking Inhibitors Gains Insights on Molecular Mechanism Underlying Pollen Tube Polar Growth	3
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations	3
Identification of Structural Elements of the Lysine Specific Demethylase 2B CxxC Domain Associated with Replicative Senescence Bypass in Primary Mouse Cells	3
Rifampicin Increases Expression of Plant Codon-Optimized Bacillus thuringiensis δ-Endotoxin Genes in Escherichia coli	3
Improved 3-D Protein Structure Predictions using Deep ResNet Model	3
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase	3
Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus	3
Expression of Codon-Optimized Gene Encoding Murine Moloney Leukemia Virus Reverse Transcriptase in Escherichia coli	3
Residue Interaction Network Analysis Predicts a Val24–Ile31 Interaction May be Involved in Preventing Amyloid‐Beta (1–42) Primary Nucleation	3
Modeling and Experimental Validation of Algorithms for Maximum Quantity of Protein to be Immobilized on Solid Supports by Electrostatic Adsorption in the Strategy of Rational Design of Immobilized Der	3
Application of a Distance-Dependent Sigmoidal Dielectric Constant to the REMC/SAAP3D Simulations of Chignolin, Trp-Cage, and the G10q Mutant	3
Effect of Freezing Time on Tissue Factor Activity and Macronutrients of Human Milk	3
TLPdb: A Resource for Thaumatin-Like Proteins	3
RNA and DNA Binding Epitopes of the Cold Shock Protein TmCsp from the Hyperthermophile Thermotoga maritima	3
CxxC Zinc Finger Protein Derived Peptide, MF18 Functions Against Biofilm Formation	2
Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis	2
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics	2
Sequential Dihedral Angles (SDAs): A Method for Evaluating the 3D Structure of Proteins	2
Cereblon Promotes the Ubiquitination and Proteasomal Degradation of Interleukin Enhancer-Binding Factor 2	2
New Insight into the Interactions of Arbutin with Mushroom Tyrosinase	2
Exploration of Serum Marker Proteins in Mice Induced by Babesia microti Infection Using a Quantitative Proteomic Approach	2
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration	2
Prediction of the Mannose-Binding Site in the Agaricus bisporus Mannose-Binding Protein	2
Effect of Agitation and Aeration on Keratinase Production in Bioreactors Using Bioprocess Engineering Aspects	2
Expression, purification, and phylogenetic analysis of MDIS1-INTERACTING RECEPTOR-LIKE KINASE1 (MIK1)	2
Royal Jelly Proteins Inhibit Macrophage Proliferation: Interactions with Native- and Oxidized-Low Density Lipoprotein	2
ABC Exporters in Pathogenesis: Role of Synthetic Anti-Microbial Peptides	2
N-Linked Glycoproteome Analysis of Diosorea alata Tuber Shows Atypical Glycosylation and Indicates Central Role of Glycosylated Proteins in Tuber Maturation	2
Studying the Role of a Single Mutation of a Family 11 Glycoside Hydrolase Using High-Resolution X-ray Crystallography	2
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-695	2
Harold A. Scheraga Legatum	2
Recombinant Production and Biochemical Characterization of Thermostable Arabinofuranosidase from Acidothermophilic Alicyclobacillus Acidocaldarius	2
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function	2
Comparison of Periplasmic and Cytoplasmic Expression of Bovine Enterokinase Light Chain in E. coli	2
Design and Analysis of a Mutant form of the Ice-Binding Protein from Choristoneura fumiferana	2
Immobilization of the Bacillus licheniformis α-Amylase on Azole Functionalized Nanoparticle: More Active, Stable, and Usability	2
Recombinant Production of Bovine Enteropeptidase Light Chain in SHuffle® T7 Express and Optimization of Induction Parameters	2
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production	2
Estrogen Sulfotransferase is Highly Expressed in Vascular Endothelial Cells Overlying Atherosclerotic Plaques	2
Production of Soluble and Functional Anti-TNF-α Fab' Fragment in Cytoplasm of E. coli: Investigating the Effect of Process Conditions on Cellular Biomass and Protein Yield Using Response Surface Metho	2
Fluorescence Determination of Peptidase Activity Based on the Quenching of a Fluorophore-Labelled Peptide by Graphene Oxide	2
Multi-catalytic Sites Inhibition of Bcl2 Induces Expanding of Hydrophobic Groove: A New Avenue Towards Waldenström Macroglobulinemia Therapy	2
Ligand Based Virtual Screening Using Self-organizing Maps	2
The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein	1
Enhanced Substrate Specificity of Thermostable Cytochrome P450 CYP175A1 by Site Saturation Mutation on Tyrosine 68	1
Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants	1
A Minireview on Temperature Dependent Protein Conformational Sampling	1
About the Protein Space Vastness	1
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles	1
gmXtal: Cooking Crystals with GROMACS	1
Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis	1
Expression and purification of recombinant human CCL5 and its biological characterization	1
Involvement of the non-active site Residues in the Catalytic Activity of NDM-4 Metallo beta-lactamase	1
Expression, Purification, and Biophysical Characterization of Klebsiella Pneumoniae Nicotinate Nucleotide Adenylyltransferase	1
Influenza Hemagglutinin Head Domain Mimicry by Rational Design	1
Enhancing recombinant Chaetomium thermophilium Formate Dehydrogenase Expression with CRISPR Technology	1
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel	1
Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN)	1
Proteomic Analysis Reveals Differential Protein Expression Induced by Inhibition of Prolyl Oligopeptidase in Filarial Parasites	1
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis	1
Inhibition of Listeria Monocytogenes HtrA Protease with Camostat, Gabexate and Nafamostat Mesylates and the Binding Mode of the Inhibitors	1
Editorial: Proteins of SARS CoV-2, the Cause of COVID-19, and the Proteins that Interact with Them	1
c.1898C>G/p.Ser633Trp Mutation in Alpha-l-Iduronidase: Clinical and Structural Implications	1
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations	1
A Novel Glucose-6-Phosphate Isomerase Exists in Chicken Breast Meat: A Selenium-Containing Enzyme that Should Be Re-recognized Through New Eyes	1
Repurposing of Strychnine as the Potential Inhibitors of Aldo–keto Reductase Family 1 Members B1 and B10: Computational Modeling and Pharmacokinetic Analysis	1
Neglected N-Truncated Amyloid-β Peptide and Its Mixed Cu–Zn Complexes	1
Comparison of in vitro Antifungal Activity Methods Using Extract of Chitinase-producing Aeromonas sp. BHC02	1
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase	1
Peptide Models of the Cytoplasmic Tail of Influenza A/H1N1 Virus Hemagglutinin Expand Understanding its pH-Dependent Modes of Interaction with Matrix Protein M1	1
Oligomerization of A. thaliana Heterotrimeric G Protein Subunits AGB1 and AGG2 In Vitro	1
Purification of Soluble Membrane-Bound Ambystoma mexicanum Epidermal Lipoxygenase from E. coli and Its Growth Effect on Human Fetal Foreskin Fibroblast	1
How Useful can the Voigt Profile be in Protein Folding Processes?	1
Protein Kinases and their Inhibitors Implications in Modulating Disease Progression	1

Biochemical and Biophysical Characterization of Carbonic Anhydrase VI from Human Milk and Saliva	1
A Non-competitive Serpin-Like Thrombin Inhibitor Isolated from Moringa oleifera Exhibit a High Affinity for Thrombin	1
Prokaryotic Expression of the Immunoglobulin’s Domains of CRTAM to Characterize a Monoclonal Antibody	1
Simulations of Amyloid-Forming Peptides in the Crystal State	1
Chemical Digestion of the -Asp-Cys- Sequence for Preparation of Post-translationally Modified Proteins	1
East to West not North-West: Structure-Based Mechanistic Resolution of 8-Hydroxyl Replacement and Resulting Effects on the Activities of Imidazole-Based Heme Oxygenase-1 Inhibitors	1
HNF1A-MODY Mutations in Nuclear Localization Signal Impair HNF1A-Import Receptor KPNA6 Interactions	1
Molecular and Enzymatic Characterization of 9-Cis-epoxycarotenoid Dioxygenases from Mulberry	1
QSSR Modeling of Bacillus Subtilis Lipase A Peptide Collision Cross-Sections in Ion Mobility Spectrometry: Local Descriptor Versus Global Descriptor	1
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis	1
Cloning, Expression and Characterization of Spore Wall Protein 5 (SWP5) of Indian Isolate NIK-1S of Nosema bombycis	1
Consideration on Efficient Recombinant Protein Production: Focus on Substrate Protein-Specific Compatibility Patterns of Molecular Chaperones	1
Metal Ions Bound to Prion Protein Affect its Interaction with Plasminogen Activation System	1
Functional Analysis of Single Nucleotide Polymorphism in ZUFSP Protein and Implication in Pathogenesis	1
Purified Native Protein Extracted from the Venom of Agelena orientalis Attenuates Memory Defects in the Rat Model of Glutamate-Induced Excitotoxicity	1
Up-Regulated Proteins Have More Protein–Protein Interactions than Down-Regulated Proteins	1
A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions	1
Purification and Conformational Characterization of a Novel Interleukin-2 Mutein	1
"Computational and Functional Characterization of a Hemorrhagic Metalloproteinase Purified from Cerastes cerastes Venom"	1
Comparative Appraisal of Leaf Proteomic and Mass Spectrometry Analyses During Fusarium Wilt Infection in Resistance and Susceptible Genotypes of Castor (Ricinus communis L.)	1
Update and Supplementary Articles Proteins of SARS CoV-2, Which Causes COVID-19, and the Interacting Proteins	1
Extracellular Oxidase from the Neonothopanus nambi Fungus as a Promising Enzyme for Analytical Applications	1
SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii	1
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis	1
A Proteomics Investigation of Salivary Profiles as Potential Biomarkers for Autism Spectrum Disorder (ASD)	1
Staphylococcus aureus Bacteriophage 52 Endolysin Exhibits Anti-Biofilm and Broad Antibacterial Activity Against Gram-Positive Bacteria	1