Protein Journal

Papers
(The median citation count of Protein Journal is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-07-01 to 2025-07-01.)
ArticleCitations
The Proteostasis of Thymic Stromal Cells in Health and Diseases34
Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis24
Involvement of the non-active site Residues in the Catalytic Activity of NDM-4 Metallo beta-lactamase17
Impression of Insect’s Proteolytic Enzyme Cocoonase and Its Application: A Comprehensive Review16
Infrared Spectral Patterns of Thyroglobulin Bearing Thyroiditogenic Epitopes14
Effect of Organic Solvents on the Activity, Stability and Secondary Structure of asclepain cI, Using FTIR and Molecular Dynamics Simulations13
Up-Regulated Proteins Have More Protein–Protein Interactions than Down-Regulated Proteins13
The Structure Biology of Tau and Clue for Aggregation Inhibitor Design13
Rational Design, Synthesis, and Computational Investigation of Dihydropyridine [2,3-d] Pyrimidines as Polyphenol Oxidase Inhibitors with Improved Potency11
Identification of Potential RNAi Targets for Cotton Mealybug (Phenacoccus solenopsis Tinsley) Management11
N-Linked Glycoproteome Analysis of Diosorea alata Tuber Shows Atypical Glycosylation and Indicates Central Role of Glycosylated Proteins in Tuber Maturation11
Utilisation of Carbon Quantum Dots from Hazelnut Husk for Folic Acid (FA) Detection: An Innovative Approach11
A New Combination: Anti Glypican-3 scFv and Diphtheria Toxin with the Best Flexible Linker11
Crystal Structure of a Thioredoxin-like Ferredoxin Encoded Within a Cobalamin Biosynthetic Operon of Rhodobacter capsulatus10
Identification of Alternatively Spliced Novel Isoforms of Human HSPB8 Gene10
Toxoplasma Gondii Importin α Shows Weak Auto-Inhibition10
Kennedy Epitope (KE)-dependent Retrograde Transport of Efficiently Cleaved HIV-1 Envelopes (Envs) and its Effect on Env Cell Surface Expression and Viral Particle Formation10
Domain Shuffling and Site-Saturation Mutagenesis for the Enhanced Inhibitory Potential of Amaranthaceae α-Amylase Inhibitors9
Physicochemical Characterization and In Vitro Digestibility Study of an In Silico Designed Recombinant Protein Enriched with Large Neutral Amino Acids and Lacking Phenylalanine for Phenylketonuria9
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis9
Thermodynamic Evolution of a Metamorphic Protein: A Theoretical-Computational Study of Human Lymphotactin9
Selection and Molecular Response of AHL-lactonase (aiiA) Producing Bacillus sp. Under Penicillin G-induced Conditions8
Soluble Expression of Antimicrobial Peptide BSN-37 from Escherichia coli by SUMO Fusion Technology8
Inhibition of Listeria Monocytogenes HtrA Protease with Camostat, Gabexate and Nafamostat Mesylates and the Binding Mode of the Inhibitors8
A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions7
Role of ionic liquids on stabilization of therapeutic proteins and model proteins7
Ferguson Plot Analysis of Chaperone ClpB from Moderate Halophile7
gmXtal: Cooking Crystals with GROMACS7
Use of 2D FFT and DTW in Protein Sequence Comparison7
Unraveling the interaction between a glycolytic regulator protein EhPpdk and an anaphase promoting complex protein EhApc10: yeast two hybrid screening, in vitro binding assays and molecular simulation7
Expression and purification of recombinant human CCL5 and its biological characterization7
Protein Production and Purification of a Codon-Optimized Human NGN3 Transcription Factor from E. coli7
Heterologous Production of Antimicrobial Peptides: Notes to Consider7
Prediction of Solubility of Proteins in Escherichia coli Based on Functional and Structural Features Using Machine Learning Methods6
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase6
Antemortem Stress Regulates Postmortem Glycolysis in Muscle by Deacetylation of Pyruvate Kinase M1 at K1416
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel6
Multiple Protein Profiler 1.0 (MPP): A Webserver for Predicting and Visualizing Physiochemical Properties of Proteins at the Proteome Level6
Live Cell Protein Imaging of Tandem Complemented-GFP11-Tagged Coiled-Coil Domain-Containing Protein-124 Identifies this Factor in G3BP1-Induced Stress-Granules6
A Novel Glucose-6-Phosphate Isomerase Exists in Chicken Breast Meat: A Selenium-Containing Enzyme that Should Be Re-recognized Through New Eyes6
Proteomic Profile of Sperm in Infertile Males Reveals Changes in Metabolic Pathways6
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-6956
Engineering Human Pancreatic RNase 1 as an Immunotherapeutic Agent for Cancer Therapy Through Computational and Experimental Studies6
Endoplasmic Reticulum Stress: Implications in Diseases6
Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective6
SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii6
Next Generation Sequencing for Potential Regulated Genes and Micro-RNAs of Early Growth Response-1 in the Esophageal Squamous Cell Carcinoma6
A Machine Learning Approach to Identify C Type Lectin Domain (CTLD) Containing Proteins5
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production5
Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN)5
Editor-in-Chief’s Introduction5
Amine Group Surface-Functionalized Carbon Quantum Dots Exhibit Anti-amyloidogenic Effects Towards Hen Egg White Lysozyme by Inducing Formation of Nontoxic Spherical Aggregates5
Investigating the Protective Role of Biochaga Drug on Structural Changes of Bovine Serum Albumin in the Presence of Methyl tert-butyl Ether5
Role Transformation of HSPA8 to Heme-peroxidase After Binding Hemin to Catalyze Heme Polymerization4
Probing Dual Covalent Irreversible Inhibition of EGFR/FGFR4 by Electrophilic-Based Natural Compounds to Overcome Resistance and Enhance Combination Therapeutic Potentials and Management of Hepatocellu4
Inhibitor Action of Unsaturated Fatty Acids on Equine Serum Butyrylcholinesterase4
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis4
On the Path to Optimal Alchemistry4
Exploring Acoustic Detection of α-Synuclein Fibrils4
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics4
Molecular and Enzymatic Characterization of 9-Cis-epoxycarotenoid Dioxygenases from Mulberry4
Chemical Modification of the Amino Groups of Human Insulin: Investigating Structural Properties and Amorphous Aggregation of Acetylated Species4
Identification of Protein–Protein Interaction Associated Functions Based on Gene Ontology4
Rational Design and Production of Bioactive Analogs of Recombinant Human Keratinocyte Growth Factor (rhKGF) with Reduced Aggregation Propensity4
Recombinant Production of Bovine Enteropeptidase Light Chain in SHuffle® T7 Express and Optimization of Induction Parameters4
Enhanced Substrate Specificity of Thermostable Cytochrome P450 CYP175A1 by Site Saturation Mutation on Tyrosine 684
Design and Analysis of a Mutant form of the Ice-Binding Protein from Choristoneura fumiferana4
Targeting Aminoglycoside Acetyltransferase Activity of Mycobacterium tuberculosis (H37Rv) Derived Eis (Enhanced Intracellular Survival) Protein with Quercetin4
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles4
Protein–Protein Docking: Past, Present, and Future3
The complex landscape of intracellular signalling in protein modification under hyperglycaemic stress leading to metabolic disorders3
Effects of Heavy Metal Stress on Seedling Growth and Antioxidant System in Sorghum (Sorghum Bicolor (L.) Moench)3
Equilibrium Between Dimeric and Monomeric Forms of Human Epidermal Growth Factor is Shifted Towards Dimers in a Solution3
Assembly of the Non-Canonical Myo9a-RhoGAP and RhoA·GDP Transition State Complex in the Presence of MgF3−3
Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants3
α-proton Chemical Shift Index and Amide Proton Chemical Shift Temperature Coefficient of Melittin in Methanol: Indicators for a Helix Structure and an Intra-Molecular Hydrogen Bond?3
A Non-competitive Serpin-Like Thrombin Inhibitor Isolated from Moringa oleifera Exhibit a High Affinity for Thrombin3
Comparative Analyses of Human Exosome Proteomes3
Interaction of Cecropin A (1–7) Analogs with DNA Analyzed by Multi-spectroscopic Methods3
An update on Glycerophosphodiester Phosphodiesterases; From Bacteria to Human3
Expression of Recombinant Stonustoxin Alpha Subunit and Preparation of polyclonal antiserum for Stonustoxin Neutralization Studies3
Expression of Recombinant Tissue Plasminogen Activator - Plasminogen Activator Inhibitor Complex in Mammal Cells as Quality Control Materials in Immunoassay3
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration3
Metal Ions Bound to Prion Protein Affect its Interaction with Plasminogen Activation System3
Significance of Sequence Features in Classification of Protein–Protein Interactions Using Machine Learning3
The Role of a Loop in the Non-catalytic Domain B on the Hydrolysis/Transglycosylation Specificity of the 4-α-Glucanotransferase from Thermotoga maritima3
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling3
Simulations of Amyloid-Forming Peptides in the Crystal State3
Herman Berendsen and Water: Personal Memories3
The Investigation of the Subtle Structural Discrepancies between Oryza Sativa Recombinant and Plasma-Derived Human Serum Albumins to Design a Novel Nanoparticle as a Taxane Delivery System3
Lipid Transfer Proteins (LTPs) Partially Purified from Capsicum chinense Jacq. Seeds: Antifungal Properties and α-amylase Inhibitory Activity3
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants2
Computational Insight into Substrate-Induced Conformational Changes in Methionyl-tRNA Synthetase of Mycobacterium Tuberculosis2
The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein2
Herman Berendsen, a Decisive Factor in My Life2
A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lact2
An Analysis of Intrinsic Protein Disorder in Antimicrobial Peptides2
Improved Antimicrobial Activity of Bovine Lactoferrin Peptide (LFcinB) Based on Rational Design2
Biochemical Characterization of Laccase from Spirulina CPCC-695 and Their Role in Estrone Degradation2
Improvement of α-amino Ester Hydrolase Stability via Computational Protein Design2
Influence of Cataract Causing Mutations on αA-Crystallin: A Computational Approach2
Structural and Biochemical Studies on Klebsiella Pneumoniae Enoyl-ACP Reductase (FabI) Suggest Flexible Substrate Binding Site2
Improved 3-D Protein Structure Predictions using Deep ResNet Model2
Tartrate Dehydrogenase in Bacillus Species: Deciphering Unique Catalytic Diversity Through Kinetic, Structural and Molecular Docking Analysis2
The Magical Power of Water: A Reminiscence of Herman Johan Christiaan Berendsen2
Correction: From Crude Extracts to Purity: A Comparative Study of Butyrylcholinesterase Purification2
Purification and Conformational Characterization of a Novel Interleukin-2 Mutein2
Synthesis and Characterisation of Chickpea Peptides-Zinc Chelates Having ACE2 Inhibitory Activity2
Herman J. C. Berendsen2
Herman Berendsen’s NMR Research in Groningen and Some Memories from a Fan2
Exosomes with Engineered Brain Derived Neurotrophic Factor on Their Surfaces Can Proliferate Menstrual Blood Derived Mesenchymal Stem Cells: Targeted Delivery for a Protein Drug2
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations2
Microenzymes: Is There Anybody Out There?2
Protein S-Nitrosylation: A Chemical Modification with Ubiquitous Biological Activities2
Molecular Cloning, Expression and Enzymatic Characterization of Tetrahymena thermophila Glutathione-S-Transferase Mu 342
Refolding, Crystallization, and Crystal Structure Analysis of a Scavenger Receptor Cysteine-Rich Domain of Human Salivary Agglutinin Expressed in Escherichia coli2
Discovery of New Dual-Target Agents Against PPAR-γ and α-Glucosidase Enzymes with Molecular Modeling Methods: Molecular Docking, Molecular Dynamic Simulations, and MM/PBSA Analysis2
Fred W. McLafferty: The Man Who Drove a Different Kind of Flying Machine2
How Azide Ion/Hydrazoic Acid Passes Through Biological Membranes: An Experimental and Computational Study2
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network2
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis2
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis2
Understanding the Necessity of Regulatory Protein Machinery in Heterologous Expression of Class-III Type of Ocins2
Characterization of the Three DHFRs and K65P Variant: Enhanced Substrate Affinity and Molecular Dynamics Analysis1
Novel Self-Cleaving Affinity Purification Method for Cellular Membrane-Associated Recombinant Paraoxonase-1 (rePON1) Enzyme1
A Significant Difference in Core PDZ Interactivity of SARS-CoV, SARS-CoV2 and MERS-CoV Protein E Peptide PDZ Motifs In Vitro1
The Regulation of TDP-43 Structure and Phase Transitions: A Review1
Development of Hemagglutinin–Neuraminidase Homologous Peptides as Novel Promising Therapeutic Agents Against Peste des Petits Ruminants Virus1
Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH1
Efficient Expression in the Prokaryotic Host System, Purification and Structural Analyses of the Recombinant Human ACE2 Catalytic Subunit as a Hybrid Protein with the B Subunit of Cholera Toxin (CTB-A1
Proteomic Analysis Reveals Differential Protein Expression Induced by Inhibition of Prolyl Oligopeptidase in Filarial Parasites1
Functional and Biochemical Analyses of Glycerol Kinase and Glycerol 3-phosphate Dehydrogenase in HEK293 Cells1
Methotrexate for Drug Repurposing as an Anti-Aggregatory Agent to Mercuric Treated α-Chymotrypsinogen-A1
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes1
Computer-Aided Multi-Epitope Based Vaccine Design Against Monkeypox Virus Surface Protein A30L: An Immunoinformatics Approach1
Propensities of Some Amino Acid Pairings in α-Helices Vary with Length1
Recent Advancements in Biosensors for the Detection and Characterization of Amyloids: A Review1
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye11
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function1
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase1
The Structural Features of MlaD Illuminate its Unique Ligand-Transporting Mechanism and Ancestry1
Computational and Experimental Approaches Towards Understanding the Role of ATG8 in Autophagy: A Therapeutic Paradigm in Leishmaniasis1
Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis1
Purification and Characterization of Trehalase From Acyrthosiphon pisum, a Target for Pest Control1
Decoding the Structure–Function Relationship of the Muramidase Domain in E. coli O157.H7 Bacteriophage Endolysin: A Potential Building Block for Chimeric Enzybiotics1
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations1
A Comprehensive Review on Machine Learning Techniques for Protein Family Prediction1
Enzyme Kinetics Features of the Representative Engineered Recombinants of Chondroitinase ABC I1
A Novel Trypsin Kunitz-Type Inhibitor from Cajanus cajan Leaves and Its Inhibitory Activity on New Cancer Serine Proteases and Its Effect on Tumor Cell Growth1
Molecular Insights of an Avian Species with Low Oxygen Affinity, the Crystal Structure of Duck T-State Methemoglobin1
Unravelling the Significance of Seed Proteomics: Insights into Seed Development, Function, and Agricultural Applications1
Selective Attachment of Polyethylene Glycol to Hemerythrin for Potential Use in Blood Substitutes1
Conjugation with the Carrier Helped to Reveal acidification-Induced Structural Shift in the Peptide from Phospholipase Domain of Parvovirus B191
Herman Berendsen, an Unforgettable Man1
Comparison of Periplasmic and Cytoplasmic Expression of Bovine Enterokinase Light Chain in E. coli1
In Memory of Dr. Miguel Llinás, a Teacher, Advisor, and Lifetime mentor1
The Impact of Terminal Peptide Extensions of Retinal Inosine 5´Monophosphate Dehydrogenase 1 Isoforms on their DNA-binding Activities1
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