Protein Journal

Article	Citations
The Proteostasis of Thymic Stromal Cells in Health and Diseases	66
The Structure Biology of Tau and Clue for Aggregation Inhibitor Design	36
Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis	32
Effect of Organic Solvents on the Activity, Stability and Secondary Structure of asclepain cI, Using FTIR and Molecular Dynamics Simulations	27
Involvement of the non-active site Residues in the Catalytic Activity of NDM-4 Metallo beta-lactamase	20
Utilisation of Carbon Quantum Dots from Hazelnut Husk for Folic Acid (FA) Detection: An Innovative Approach	17
Impression of Insect’s Proteolytic Enzyme Cocoonase and Its Application: A Comprehensive Review	16
Infrared Spectral Patterns of Thyroglobulin Bearing Thyroiditogenic Epitopes	14
Up-Regulated Proteins Have More Protein–Protein Interactions than Down-Regulated Proteins	13
Rational Design, Synthesis, and Computational Investigation of Dihydropyridine [2,3-d] Pyrimidines as Polyphenol Oxidase Inhibitors with Improved Potency	13
A New Combination: Anti Glypican-3 scFv and Diphtheria Toxin with the Best Flexible Linker	12
A Minireview on Temperature Dependent Protein Conformational Sampling	12
Identification of Alternatively Spliced Novel Isoforms of Human HSPB8 Gene	11
Kennedy Epitope (KE)-dependent Retrograde Transport of Efficiently Cleaved HIV-1 Envelopes (Envs) and its Effect on Env Cell Surface Expression and Viral Particle Formation	11
N-Linked Glycoproteome Analysis of Diosorea alata Tuber Shows Atypical Glycosylation and Indicates Central Role of Glycosylated Proteins in Tuber Maturation	11
Thermodynamic Evolution of a Metamorphic Protein: A Theoretical-Computational Study of Human Lymphotactin	10
Crystal Structure of a Thioredoxin-like Ferredoxin Encoded Within a Cobalamin Biosynthetic Operon of Rhodobacter capsulatus	10
Soluble Expression of Antimicrobial Peptide BSN-37 from Escherichia coli by SUMO Fusion Technology	9
Physicochemical Characterization and In Vitro Digestibility Study of an In Silico Designed Recombinant Protein Enriched with Large Neutral Amino Acids and Lacking Phenylalanine for Phenylketonuria	9
Heterologous Production of Antimicrobial Peptides: Notes to Consider	9
Inhibition of Listeria Monocytogenes HtrA Protease with Camostat, Gabexate and Nafamostat Mesylates and the Binding Mode of the Inhibitors	9
Toxoplasma Gondii Importin α Shows Weak Auto-Inhibition	9
Expression and purification of recombinant human CCL5 and its biological characterization	8
Selection and Molecular Response of AHL-lactonase (aiiA) Producing Bacillus sp. Under Penicillin G-induced Conditions	8
Molecular Modeling and Optimization of Type II E.coli l-Asparginase Activity by in silico Design and in vitro Site-directed Mutagenesis	8

gmXtal: Cooking Crystals with GROMACS	8
Domain Shuffling and Site-Saturation Mutagenesis for the Enhanced Inhibitory Potential of Amaranthaceae α-Amylase Inhibitors	8
Unraveling the interaction between a glycolytic regulator protein EhPpdk and an anaphase promoting complex protein EhApc10: yeast two hybrid screening, in vitro binding assays and molecular simulation	7
Prediction of the Mannose-Binding Site in the Agaricus bisporus Mannose-Binding Protein	7
Multiple Protein Profiler 1.0 (MPP): A Webserver for Predicting and Visualizing Physiochemical Properties of Proteins at the Proteome Level	7
Protein Production and Purification of a Codon-Optimized Human NGN3 Transcription Factor from E. coli	7
Use of 2D FFT and DTW in Protein Sequence Comparison	7
Ferguson Plot Analysis of Chaperone ClpB from Moderate Halophile	7
Role of ionic liquids on stabilization of therapeutic proteins and model proteins	7
A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions	7
Endoplasmic Reticulum Stress: Implications in Diseases	6
Live Cell Protein Imaging of Tandem Complemented-GFP11-Tagged Coiled-Coil Domain-Containing Protein-124 Identifies this Factor in G3BP1-Induced Stress-Granules	6
Antemortem Stress Regulates Postmortem Glycolysis in Muscle by Deacetylation of Pyruvate Kinase M1 at K141	6
A Novel Glucose-6-Phosphate Isomerase Exists in Chicken Breast Meat: A Selenium-Containing Enzyme that Should Be Re-recognized Through New Eyes	6
Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective	6
Molecular and Computational Analysis Identify Statins as Selective Inhibitors of Human Butyrylcholinesterase	6
Engineering Human Pancreatic RNase 1 as an Immunotherapeutic Agent for Cancer Therapy Through Computational and Experimental Studies	6
Prediction of Solubility of Proteins in Escherichia coli Based on Functional and Structural Features Using Machine Learning Methods	6
Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel	6
Biochemical Characterization of Novel Phenylalanine Ammonia-Lyase from Spirulina CPCC-695	6
The Kringle of Life	5
Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN)	5
A Machine Learning Approach to Identify C Type Lectin Domain (CTLD) Containing Proteins	5
Amine Group Surface-Functionalized Carbon Quantum Dots Exhibit Anti-amyloidogenic Effects Towards Hen Egg White Lysozyme by Inducing Formation of Nontoxic Spherical Aggregates	5
Next Generation Sequencing for Potential Regulated Genes and Micro-RNAs of Early Growth Response-1 in the Esophageal Squamous Cell Carcinoma	5
On the Path to Optimal Alchemistry	5
Identification of Protein–Protein Interaction Associated Functions Based on Gene Ontology	5
Proteomic Profile of Sperm in Infertile Males Reveals Changes in Metabolic Pathways	5
SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii	5
Probing Dual Covalent Irreversible Inhibition of EGFR/FGFR4 by Electrophilic-Based Natural Compounds to Overcome Resistance and Enhance Combination Therapeutic Potentials and Management of Hepatocellu	4
Exploring Acoustic Detection of α-Synuclein Fibrils	4
Editor-in-Chief’s Introduction	4
Role Transformation of HSPA8 to Heme-peroxidase After Binding Hemin to Catalyze Heme Polymerization	4
Design and Analysis of a Mutant form of the Ice-Binding Protein from Choristoneura fumiferana	4
Consideration on Efficient Recombinant Protein Production: Focus on Substrate Protein-Specific Compatibility Patterns of Molecular Chaperones	4
Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis	4
Rational Design and Production of Bioactive Analogs of Recombinant Human Keratinocyte Growth Factor (rhKGF) with Reduced Aggregation Propensity	4
Functional Characterization of Recombinant Endo-Levanase (LevBk) from Bacillus koreensis HL12 on Short-Chain Levan-Type Fructooligosaccharides Production	4
Enhanced Substrate Specificity of Thermostable Cytochrome P450 CYP175A1 by Site Saturation Mutation on Tyrosine 68	4
The complex landscape of intracellular signalling in protein modification under hyperglycaemic stress leading to metabolic disorders	4
Chemical Modification of the Amino Groups of Human Insulin: Investigating Structural Properties and Amorphous Aggregation of Acetylated Species	4
HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics	4
Inhibitor Action of Unsaturated Fatty Acids on Equine Serum Butyrylcholinesterase	4
A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles	4
Investigating the Protective Role of Biochaga Drug on Structural Changes of Bovine Serum Albumin in the Presence of Methyl tert-butyl Ether	4
Recombinant Production of Bovine Enteropeptidase Light Chain in SHuffle® T7 Express and Optimization of Induction Parameters	4
Molecular and Enzymatic Characterization of 9-Cis-epoxycarotenoid Dioxygenases from Mulberry	4
Targeting Aminoglycoside Acetyltransferase Activity of Mycobacterium tuberculosis (H37Rv) Derived Eis (Enhanced Intracellular Survival) Protein with Quercetin	4
Complete Model of Vinculin Suggests the Mechanism of Activation by Helical Super-Bundle Unfurling	3
α-proton Chemical Shift Index and Amide Proton Chemical Shift Temperature Coefficient of Melittin in Methanol: Indicators for a Helix Structure and an Intra-Molecular Hydrogen Bond?	3

Metal Ions Bound to Prion Protein Affect its Interaction with Plasminogen Activation System	3
The Role of a Loop in the Non-catalytic Domain B on the Hydrolysis/Transglycosylation Specificity of the 4-α-Glucanotransferase from Thermotoga maritima	3
Significance of Sequence Features in Classification of Protein–Protein Interactions Using Machine Learning	3
An update on Glycerophosphodiester Phosphodiesterases; From Bacteria to Human	3
Protein–Protein Docking: Past, Present, and Future	3
Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration	3
The Investigation of the Subtle Structural Discrepancies between Oryza Sativa Recombinant and Plasma-Derived Human Serum Albumins to Design a Novel Nanoparticle as a Taxane Delivery System	3
Interaction of Cecropin A (1–7) Analogs with DNA Analyzed by Multi-spectroscopic Methods	3
Comparative Analyses of Human Exosome Proteomes	3
Equilibrium Between Dimeric and Monomeric Forms of Human Epidermal Growth Factor is Shifted Towards Dimers in a Solution	3
Herman Berendsen and Water: Personal Memories	3
Lipid Transfer Proteins (LTPs) Partially Purified from Capsicum chinense Jacq. Seeds: Antifungal Properties and α-amylase Inhibitory Activity	3
A Non-competitive Serpin-Like Thrombin Inhibitor Isolated from Moringa oleifera Exhibit a High Affinity for Thrombin	3
Simulations of Amyloid-Forming Peptides in the Crystal State	3
Effects of Heavy Metal Stress on Seedling Growth and Antioxidant System in Sorghum (Sorghum Bicolor (L.) Moench)	3
Expression of Recombinant Stonustoxin Alpha Subunit and Preparation of polyclonal antiserum for Stonustoxin Neutralization Studies	3
Fred W. McLafferty: The Man Who Drove a Different Kind of Flying Machine	2
Production of Soluble and Functional Anti-TNF-α Fab' Fragment in Cytoplasm of E. coli: Investigating the Effect of Process Conditions on Cellular Biomass and Protein Yield Using Response Surface Metho	2
A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lact	2
Expression of Recombinant Tissue Plasminogen Activator - Plasminogen Activator Inhibitor Complex in Mammal Cells as Quality Control Materials in Immunoassay	2
Expression, Purification, Characterization and Cellular Uptake of MeCP2 Variants	2
How Azide Ion/Hydrazoic Acid Passes Through Biological Membranes: An Experimental and Computational Study	2
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis	2
Physicochemical Characterization of a Recombinant eCG and Comparative Studies with PMSG Commercial Preparations	2
Influence of Cataract Causing Mutations on αA-Crystallin: A Computational Approach	2
Synthesis and Characterisation of Chickpea Peptides-Zinc Chelates Having ACE2 Inhibitory Activity	2
Tartrate Dehydrogenase in Bacillus Species: Deciphering Unique Catalytic Diversity Through Kinetic, Structural and Molecular Docking Analysis	2
Refolding, Crystallization, and Crystal Structure Analysis of a Scavenger Receptor Cysteine-Rich Domain of Human Salivary Agglutinin Expressed in Escherichia coli	2
Discovery of New Dual-Target Agents Against PPAR-γ and α-Glucosidase Enzymes with Molecular Modeling Methods: Molecular Docking, Molecular Dynamic Simulations, and MM/PBSA Analysis	2
Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants	2
Protein S-Nitrosylation: A Chemical Modification with Ubiquitous Biological Activities	2
The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein	2
Herman Berendsen’s NMR Research in Groningen and Some Memories from a Fan	2
Improvement of α-amino Ester Hydrolase Stability via Computational Protein Design	2
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis	2
Structural and Biochemical Studies on Klebsiella Pneumoniae Enoyl-ACP Reductase (FabI) Suggest Flexible Substrate Binding Site	2
An Analysis of Intrinsic Protein Disorder in Antimicrobial Peptides	2
Molecular Cloning, Expression and Enzymatic Characterization of Tetrahymena thermophila Glutathione-S-Transferase Mu 34	2
Computational Insight into Substrate-Induced Conformational Changes in Methionyl-tRNA Synthetase of Mycobacterium Tuberculosis	2
Herman Berendsen, a Decisive Factor in My Life	2
Assembly of the Non-Canonical Myo9a-RhoGAP and RhoA·GDP Transition State Complex in the Presence of MgF3−	2
The Magical Power of Water: A Reminiscence of Herman Johan Christiaan Berendsen	2
Purification and Conformational Characterization of a Novel Interleukin-2 Mutein	2
Extracellular Oxidase from the Neonothopanus nambi Fungus as a Promising Enzyme for Analytical Applications	2
Microenzymes: Is There Anybody Out There?	2
Exosomes with Engineered Brain Derived Neurotrophic Factor on Their Surfaces Can Proliferate Menstrual Blood Derived Mesenchymal Stem Cells: Targeted Delivery for a Protein Drug	2
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network	2
Understanding the Necessity of Regulatory Protein Machinery in Heterologous Expression of Class-III Type of Ocins	2
Improved 3-D Protein Structure Predictions using Deep ResNet Model	2
UMAP-DBP: An Improved DNA-Binding Proteins Prediction Method Based on Uniform Manifold Approximation and Projection	1
Improved Antimicrobial Activity of Bovine Lactoferrin Peptide (LFcinB) Based on Rational Design	1
Biochemical Characterization of Laccase from Spirulina CPCC-695 and Their Role in Estrone Degradation	1
Selective Attachment of Polyethylene Glycol to Hemerythrin for Potential Use in Blood Substitutes	1
Proteomic Analysis Reveals Differential Protein Expression Induced by Inhibition of Prolyl Oligopeptidase in Filarial Parasites	1
In Memory of Dr. Miguel Llinás, a Teacher, Advisor, and Lifetime mentor	1
Introduction to International Enzyme and Bioprocess Days (EBDays)	1
Computer-Aided Multi-Epitope Based Vaccine Design Against Monkeypox Virus Surface Protein A30L: An Immunoinformatics Approach	1
Unravelling the Significance of Seed Proteomics: Insights into Seed Development, Function, and Agricultural Applications	1
The Structural Features of MlaD Illuminate its Unique Ligand-Transporting Mechanism and Ancestry	1
Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH	1
New Insight into the Interactions of Arbutin with Mushroom Tyrosinase	1
Immobilization of Fungal Cellulases Highlighting β-Glucosidase: Techniques, Supports, Chemical, and Physical Changes	1
A Significant Difference in Core PDZ Interactivity of SARS-CoV, SARS-CoV2 and MERS-CoV Protein E Peptide PDZ Motifs In Vitro	1
Herman J. C. Berendsen	1
Propensities of Some Amino Acid Pairings in α-Helices Vary with Length	1
A Novel Trypsin Kunitz-Type Inhibitor from Cajanus cajan Leaves and Its Inhibitory Activity on New Cancer Serine Proteases and Its Effect on Tumor Cell Growth	1
Comparison of Periplasmic and Cytoplasmic Expression of Bovine Enterokinase Light Chain in E. coli	1
Methotrexate for Drug Repurposing as an Anti-Aggregatory Agent to Mercuric Treated α-Chymotrypsinogen-A	1
Decoding the Structure–Function Relationship of the Muramidase Domain in E. coli O157.H7 Bacteriophage Endolysin: A Potential Building Block for Chimeric Enzybiotics	1
Development of Hemagglutinin–Neuraminidase Homologous Peptides as Novel Promising Therapeutic Agents Against Peste des Petits Ruminants Virus	1
Enzyme Kinetics Features of the Representative Engineered Recombinants of Chondroitinase ABC I	1
Characterization of the Three DHFRs and K65P Variant: Enhanced Substrate Affinity and Molecular Dynamics Analysis	1
Intermolecular And Dynamic Investigation of The Mechanism of Action of Reldesemtiv on Fast Skeletal Muscle Troponin Complex Toward the Treatment of Impaired Muscle Function	1
The Impact of Terminal Peptide Extensions of Retinal Inosine 5´Monophosphate Dehydrogenase 1 Isoforms on their DNA-binding Activities	1
The Regulation of TDP-43 Structure and Phase Transitions: A Review	1
Molecular Cloning, Expression and Characterisation of a Bacterial Myrosinase from Citrobacter Wye1	1
Royal Jelly Proteins Inhibit Macrophage Proliferation: Interactions with Native- and Oxidized-Low Density Lipoprotein	1
Molecular Insights of an Avian Species with Low Oxygen Affinity, the Crystal Structure of Duck T-State Methemoglobin	1
Most Probable Druggable Pockets in Mutant p53-Arg175His Clusters Extracted from Gaussian Accelerated Molecular Dynamics Simulations	1
Purification and Characterization of Trehalase From Acyrthosiphon pisum, a Target for Pest Control	1

In Memory of Dr. Miguel Llinas by Tom C.-C. Hu (February, 2021)	1
Photopolymerization with EDTA and Riboflavin for Proteins Analysis in Polyacrylamide Gel Electrophoresis	1
A Comprehensive Review on Machine Learning Techniques for Protein Family Prediction	1
Protein Structure Prediction: Conventional and Deep Learning Perspectives	1
Recent Advancements in Biosensors for the Detection and Characterization of Amyloids: A Review	1
Inhibitory Action of Omega-3 and Omega-6 Fatty Acids Alpha-Linolenic, Arachidonic and Linoleic acid on Human Erythrocyte Acetylcholinesterase	1