OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Proteins and Proteomics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Challenge to overcome current limitations of cell-penetrating peptides	74
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	68
Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway	60
Molecular and cellular dynamics of the 26S proteasome	38
Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores	37
Nucleophosmin, a multifunctional nucleolar organizer with a role in DNA repair	32
Low barrier hydrogen bonds in protein structure and function	31
d-Alanine: Distribution, origin, physiological relevance, and implications in disease	30
Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients	29
Calpains for dummies: What you need to know about the calpain family	27
Deficit of human ornithine aminotransferase in gyrate atrophy: Molecular, cellular, and clinical aspects	27
Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions	24
Cerebrospinal fluid and serum d-serine concentrations are unaltered across the whole clinical spectrum of Alzheimer's disease	22
d-serine in physiological and pathological brain aging	22
Advancing d-amino acid-containing peptide discovery in the metazoan	21
Proteomic advances in salivary diagnostics	20
Dysfunctional d-aspartate metabolism in BTBR mouse model of idiopathic autism	20
A unifying framework for amyloid-mediated membrane damage: The lipid-chaperone hypothesis	20
Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents	17
Recent technological developments for native mass spectrometry	16
Molecular simulations of proteins: From simplified physical interactions to complex biological phenomena	16
Update on relevant trypanosome peptidases: Validated targets and future challenges	16
Proteomics in thyroid cancer and other thyroid-related diseases: A review of the literature	15
Mechanisms of DNA−protein cross-link formation and repair	15
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	14

Mass spectrometry-based proteomics analyses of post-translational modifications and proteoforms in human pituitary adenomas	14
Characterization of large intact protein ions by mass spectrometry: What directions should we follow?	14
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	14
Stage-specific protein regulation during somatic embryo development of Carica papaya L. ‘Golden’	13
Modulation of α-synuclein phase separation by biomolecules	12
Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions	12
Single-cell proteomics: A treasure trove in neurobiology	12
Ubiquitin ligase Cbl-b and inhibitory Cblin peptides	11
Pathological cardiac remodeling seen by the eyes of proteomics	11
Ceruloplasmin and oxidative stress in severe eosinophilic asthma patients treated with Mepolizumab and Benralizumab	11
Human cathepsin X/Z is a biologically active homodimer	10
OMA1—An integral membrane protease?	10
Target enzymes are stabilized by AfrLEA6 and a gain of α-helix coincides with protection by a group 3 LEA protein during incremental drying	10
Analysis of Hashimoto's thyroiditis on fine needle aspiration samples by MALDI-Imaging	10
Recent advances in proteomics and its implications in pituitary endocrine disorders	10
Crystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors	10
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	9
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	9
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	9
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	9
Effect of active-site aromatic residues Tyr or Phe on activity and stability of glucose 6-phosphate dehydrogenase from psychrophilic Arctic bacterium Sphingomonas sp.	9
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	9
Decipher the connections between proteins and phenotypes	8
AbsoluRATE: An in-silico method to predict the aggregation kinetics of native proteins	8
Amyloid fibril formation by αS1- and β-casein implies that fibril formation is a general property of casein proteins	8
Crystal structure of a chitinase (RmChiA) from the thermophilic fungus Rhizomucor miehei with a real active site tunnel	8
Quantitative profiling of axonal guidance proteins during the differentiation of human neurospheres	8
Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant	8
Prediction of membrane protein types by fusing protein-protein interaction and protein sequence information	8
Structural foundations of sticholysin functionality	8
Arg236 in human chymotrypsin B2 (CTRB2) is a key determinant of high enzyme activity, trypsinogen degradation capacity, and protection against pancreatitis	8
Quantitative proteomics and phosphoproteomics of Trypanosoma cruzi epimastigote cell cycle	7
Native mass spectrometry for the investigation of protein structural (dis)order	7
The nuclear localization sequence of the epigenetic factor RYBP binds to human importin α3	7
The impact of blood-processing time on the proteome of human peripheral blood mononuclear cells	7
Immune response pattern across the asymptomatic, symptomatic and convalescent periods of COVID-19	7
Protein oxidation marker, α-amino adipic acid, impairs proteome of differentiated human enterocytes: Underlying toxicological mechanisms	7
Designer D-peptides targeting the N-terminal region of α-synuclein to prevent parkinsonian-associated fibrilization and cytotoxicity	7
Dual effect of 2D WS2 nanoparticles on the lysozyme conformation	7
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	7
SopD from Salmonella specifically inactivates Rab8	7
Phosphopantetheine Adenylyltransferase: A promising drug target to combat antibiotic resistance	6
Aggregation kinetics of the protein photoreceptor Vivid	6
Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations	6
Structural mass spectrometry of membrane proteins	6
Molecular trait of follicular-patterned thyroid neoplasms defined by MALDI-imaging	6
Isobenzofuran-1(3H)-ones as new tyrosinase inhibitors: Biological activity and interaction studies by molecular docking and NMR	6
The explorations of dynamic interactions of paxillin at the focal adhesions	6
In silico analysis of the aggregation propensity of the SARS-CoV-2 proteome: Insight into possible cellular pathologies	6
Apolipoprotein E4 exhibits intermediates with domain interaction	6

Structurally plastic NEMO and oligomerization prone IKK2 subunits define the behavior of human IKK2:NEMO complexes in solution	6
Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cells	6