OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Proteins and Proteomics is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	47
The regulation of the thermal stability and affinity of the HSPA5 (Grp78/BiP) by clients and nucleotides is modulated by domains coupling	37
Co-chaperonin GroES subunit exchange as dependent on time, pH, protein concentration, and urea	27
Proteomics and its application in endocrine disorders	26
TMB Stab-pred: Predicting the stability of transmembrane β-barrel proteins using their sequence and structural signatures	25
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	19
Chemical proteomics approaches for protein post-translational modification studies	18
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100	18
Active roles of lytic polysaccharide monooxygenases in human pathogenicity	18
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	17
Beta-KTx14.3, a scorpion toxin, blocks the human potassium channel KCNQ1	15
Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition	14
The oxidative nuclease activity of human cytochrome c with mutations in Ω-loop C/D	14
Epitope mapping of SARS-CoV-2 RBDs by hydroxyl radical protein footprinting reveals the importance of including negative antibody controls	13
An intermolecular hydrogen bonded network in the PRELID-TRIAP protein family plays a role in lipid sensing	13
Binding interactions in a kinase active site modulate background ATP hydrolysis	13
AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center	13
Editorial Board	12
Structure and functional studies of Avt1, a novel peptide from the sea anemone Aulactinia veratra	12
Editorial Board	12
Modulation of the carbohydrate-binding specificity of two Xenopus proto-type galectins by site-directed mutagenesis	11
A single amino acid difference between archaeal and human type 2 methionine aminopeptidases differentiates their affinity towards ovalicin	11
Uncovering the membrane-integrated SecAN protein that plays a key role in translocating nascent outer membrane proteins	11
Green tea polyphenol EGCG acts differentially on end-stage amyloid polymorphs of α-synuclein formed in different polyol osmolytes	11
Editorial Board	11

Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction	11
Structural-functional relevance of DNAJBs in protein aggregation and associated neurodegenerative diseases	10
Structural and biophysical characterization of the selenoprotein SelW1 from Chlamydomonas reinhardtii	10
Exploring human carboxylesterases 1 and 2 selectivity of two families of substrates at an atomistic level	10
Profilings of subproteomes of lectin-binding proteins of nine Bothrops venoms reveal variability driven by different glycan types	10
The N93D mutation of the human T-cell leukemia virus type 1 envelope glycoprotein found in symptomatic patients enhances neuropilin-1 b1 domain binding	10
Plumbagin accelerates serum albumin's amyloid aggregation kinetics and generates fibril polymorphism by inducing non-native β-sheet structures	10
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	9
Bacteriophage-encoded chaperonins stimulate prion protein fibrillation in an ATP-dependent manner	9
Editorial Board	9
Recent technological developments for native mass spectrometry	9
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	8
Editorial Board	8
Importance of aspartate 4 in the Mg2+ dependent regulation of Leishmania major PAS domain-containing phosphoglycerate kinase	8
FunPredCATH: An ensemble method for predicting protein function using CATH	7
Exploring liquid-liquid phase separation in the organisation of Golgi matrix proteins	7
Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study	7
Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin	7
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	7
Editorial Board	7
The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans	7
AP sites in various mRNA positions cross-link to the protein uS3 in the translating mammalian ribosome	7
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	7
Investigation on a MMACHC mutant from cblC disease: The c.394C>T variant	6
Editorial Board	6
Crystal structure of the Cys-NO modified YopH tyrosine phosphatase	6
Editorial Board	6
Role of electrostatics in cold adaptation: A comparative study of eury- and stenopsychrophilic triose phosphate isomerase	6
Propagation of conformational instability in FK506-binding protein FKBP12	6
Kinetic characterization and thermostability of C. elegans cytoplasmic and mitochondrial malate dehydrogenases	6
The structural basis of conserved residue variant effect on enzyme activity of UGT2B15	6
Corrigendum to “Mass spectrometry analysis of the oxidation states of the pro oncogenic protein anterior gradient-2 reveals covalent dimerization via an intermolecular disulphide bond” [Biochimica et	6
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	6
Structure of the Borrelia burgdorferi ATP-dependent metalloprotease FtsH in its functionally relevant hexameric form	6
The “Wave” of Brazilian proteomics	6
Editorial Board	5
Human apo-metallothionein 1a is not a random coil: Evidence from guanidinium chloride, high temperature, and acidic pH unfolding studies	5
Structural mass spectrometry decodes domain interaction and dynamics of the full-length Human Histone Deacetylase 2	5
Editorial Board	5
Recent advances in proteomics and its implications in pituitary endocrine disorders	5
The apo-acyl coenzyme A binding protein of Leishmania major forms a unique ‘AXXA’ motif mediated dimer	5
Immune response pattern across the asymptomatic, symptomatic and convalescent periods of COVID-19	5
Editorial Board	5
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	5
The Fe and Zn cofactor dilemma	4
Editorial Board	4
Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity	4
Computing pathogenicity of mutations in human cytochrome P450 superfamily	4
Electrochemical characterization of mutant forms of rubredoxin B from Mycobacterium tuberculosis	4
Identification of potential pharmacological chaperones that selectively stabilize mutated Aspartoacylases in Canavan disease	4

Elucidating the inhibitory effects of rationally designed novel hexapeptide against hen egg white lysozyme fibrillation at acidic and physiological pH	4
Structural basis of nuclear transport for NEIL DNA glycosylases mediated by importin-alpha	4
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	4
Structural conservation in the glutathione binding in Sphingomonas sp. glutaredoxin Grx3 and variations for cold adaptation	4
Biochemical and biophysical features of disease-associated tau mutants V363A and V363I	4
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	4
The effect of denaturants on protein thermal stability analyzed through a theoretical model considering multiple binding sites	4
Editorial Board	4
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	4
Mapping the Periostin splice isoforms in atopic dermatitis and an in vitro asthma model – A multi-platform analysis using mass spectrometry and RT-qPCR	4
Heterotypic liquid-liquid phase separation of tau and α-synuclein: Implications for overlapping neuropathologies	3
Native mass spectrometry for the investigation of protein structural (dis)order	3
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	3
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	3
Understanding the mechanism of amylin aggregation: From identifying crucial segments to tracing dominant sequential events to modeling potential aggregation suppressors	3
Mutation effects on FAS1 domain 4 based on structure and solubility	3
Tracking heme biology with resonance Raman spectroscopy	3
Structural insights into the mechanism underlying the dual cofactor specificity of glyoxylate reductase from Acetobacter aceti in the β-hydroxyacid dehydrogenase family	3
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	3
Conformational and dynamic properties of the KH1 domain of FMRP and its fragile X syndrome linked G266E variant	3
Editorial Board	3
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	3
Structural foundations of sticholysin functionality	3
Enzymatic and biophysical characterization of a novel modular cellulosomal GH5 endoglucanase multifunctional from the anaerobic gut fungus Piromyces finnis	3
Identification of the interfacial regions in misfolded transthyretin oligomers	3
The regulation of RGLG2-VWA by Ca2+ ions	3
Classification of binding property of amyloid β to lipid membranes: Membranomic research using quartz crystal microbalance combined with the immobilization of lipid planar membranes	3
Cd-induced cytosolic proteome changes in the cyanobacterium Anabaena sp. PCC7120 are mediated by LexA as one of the regulatory proteins	3
Crystal structure of thymidine kinase from the multi-drug resistant col strain of Staphylococcus aureus	3
Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli	2
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	2
Assigning roles in Chlamydomonas ribosome biogenesis: The conserved factor NIP7	2
Amyloid-β aggregates induced by β-cholesteryl glucose-embedded liposomes	2
Deciphering the cleavage sites of 3C-like protease in Gammacoronaviruses and Deltacoronaviruses	2
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	2
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	2
Structural insights of the complex formed by KRAS G12V and a novel TIG3 peptide	2
The explorations of dynamic interactions of paxillin at the focal adhesions	2
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	2
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	2
Investigations of pH-dependent dynamic properties of OmpG-16SL, an outer membrane protein G mutant by ATR-FTIR spectroscopy	2
Modulation of α-synuclein phase separation by biomolecules	2
Biophysical characterization of human-cell-expressed, full-length κI O18/O8, AL-09, λ6a, and Wil immunoglobulin light chains	2
SopD from Salmonella specifically inactivates Rab8	2
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	2
Structural characterization of the type I-B CRISPR Cas7 from Thermobaculum terrenum	2
Structural analysis of cysteine-free Nt.BspD6 nicking endonuclease and its functional features	2
Characterization of E121K mutation of D-amino acid oxidase – Insights into mechanisms leading to amyotrophic lateral sclerosis	2
Mechanisms of DNA−protein cross-link formation and repair	2
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity	2
A glimpse on the architecture of hnRNP C1/C2 interaction network in cultured oligodendrocytes	2
Probing the role of Val228 on the catalytic activity of Scytalidium catalase	2
Steady-state kinetic analysis of human cholinesterases over wide concentration ranges of competing substrates	2
Structural basis for the allosteric behaviour and substrate specificity of Lactococcus lactis Prolidase	2
Mechanistic aspects of the transamination reactions catalyzed by D-amino acid transaminase from Haliscomenobacter hydrossis	2
Incorporation of pyridoxal-5′-phosphate into the apoenzyme: A structural study of D-amino acid transaminase from Haliscomenobacter hydrossis	2