OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Proteins and Proteomics is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)

Article	Citations
Co-chaperonin GroES subunit exchange as dependent on time, pH, protein concentration, and urea	59
Solution-based studies on the contact between the complement receptor 3 ligand-binding domain and simvastatin	29
Structure prediction and engineering of de novo proteins	26
TMB Stab-pred: Predicting the stability of transmembrane β-barrel proteins using their sequence and structural signatures	23
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	21
The regulation of the thermal stability and affinity of the HSPA5 (Grp78/BiP) by clients and nucleotides is modulated by domains coupling	21
Understanding Huntingtin protein aggregation in cell mimicking environments	18
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100	18
Active roles of lytic polysaccharide monooxygenases in human pathogenicity	17
Chemical proteomics approaches for protein post-translational modification studies	17
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	16
Beta-KTx14.3, a scorpion toxin, blocks the human potassium channel KCNQ1	14
Identification of new protein-coding potential in Leishmania braziliensis using a proteogenomics approach	14
The oxidative nuclease activity of human cytochrome c with mutations in Ω-loop C/D	12
AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center	12
An intermolecular hydrogen bonded network in the PRELID-TRIAP protein family plays a role in lipid sensing	11
Direct cryo-EM visualization of the β-sheet structure in curved amyloid protofibril	11
A single amino acid difference between archaeal and human type 2 methionine aminopeptidases differentiates their affinity towards ovalicin	10
Green tea polyphenol EGCG acts differentially on end-stage amyloid polymorphs of α-synuclein formed in different polyol osmolytes	10
Epitope mapping of SARS-CoV-2 RBDs by hydroxyl radical protein footprinting reveals the importance of including negative antibody controls	10
Editorial Board	10
Structure and functional studies of Avt1, a novel peptide from the sea anemone Aulactinia veratra	10
Plumbagin accelerates serum albumin's amyloid aggregation kinetics and generates fibril polymorphism by inducing non-native β-sheet structures	9
Editorial Board	9
Biochemical and kinetic properties of quinone oxidoreductase from Leishmania orientalis, a member of medium-chain dehydrogenase/reductase superfamily	9

Profilings of subproteomes of lectin-binding proteins of nine Bothrops venoms reveal variability driven by different glycan types	9
Structural-functional relevance of DNAJBs in protein aggregation and associated neurodegenerative diseases	9
Uncovering the membrane-integrated SecAN protein that plays a key role in translocating nascent outer membrane proteins	9
Elucidation of multifunctionality and substrate specificity of human aspartate aminotransferases	8
Flexibility in acidophilic thioredoxins: Insights from Asp43 substitutions in E. coli thioredoxin	8
Corrigendum to ‘Glycoproteomic characterization of Neuropilin-1 reveals critical glycosylation sites for SARS-CoV-2 entry’ [Biochimica et Biophysica Acta (BBA) - proteins and proteomics 1873 (5) (2025	8
Exploring human carboxylesterases 1 and 2 selectivity of two families of substrates at an atomistic level	8
Importance of aspartate 4 in the Mg2+ dependent regulation of Leishmania major PAS domain-containing phosphoglycerate kinase	8
Bacteriophage-encoded chaperonins stimulate prion protein fibrillation in an ATP-dependent manner	8
Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin	7
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	7
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	7
Editorial Board	7
Unravelling the phosphoregulatory network of protein kinase C-delta (PKC-δ)	7
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	7
Exploring liquid-liquid phase separation in the organisation of Golgi matrix proteins	6
Evolution in neuropsychiatric cis-regulatory enhancers through human-specific neuronal mutations within transcription factor binding sites	6
MS analysis of proteins concentrated on the surface of AFM chips from the blood plasma of healthy volunteers	6
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	6
FunPredCATH: An ensemble method for predicting protein function using CATH	6
Oxygen-carrying proteins employed in blood substitute candidates: differences in interactions with a model antioxidant molecule	6
The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans	6
Biophysical characterization of Hpa1 protein from Xanthomonas orzyae	6
Investigating protein aggregation in protein-carbohydrate interfaces using sequence and structural features	6
Editorial Board	5
Chemometric evaluation of key residues affecting the stability of cold shock proteins	5
Phafin2 modulates the aggregation of NLRP3 on dispersed trans-Golgi network	5
Propagation of conformational instability in FK506-binding protein FKBP12	5
The structural basis of conserved residue variant effect on enzyme activity of UGT2B15	5
Role of electrostatics in cold adaptation: A comparative study of eury- and stenopsychrophilic triose phosphate isomerase	5
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	5
Corrigendum to “Mass spectrometry analysis of the oxidation states of the pro oncogenic protein anterior gradient-2 reveals covalent dimerization via an intermolecular disulphide bond” [Biochimica et	5
Investigation on a MMACHC mutant from cblC disease: The c.394C>T variant	5
Identification of potential pharmacological chaperones that selectively stabilize mutated Aspartoacylases in Canavan disease	4
Molecular insights into diosgenin's role in preventing protein aggregation in neurodegenerative diseases	4
Editorial Board	4
The effect of denaturants on protein thermal stability analyzed through a theoretical model considering multiple binding sites	4
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	4
Editorial Board	4
Editorial Board	4
The apo-acyl coenzyme A binding protein of Leishmania major forms a unique ‘AXXA’ motif mediated dimer	4
Human apo-metallothionein 1a is not a random coil: Evidence from guanidinium chloride, high temperature, and acidic pH unfolding studies	4
Elucidating the inhibitory effects of rationally designed novel hexapeptide against hen egg white lysozyme fibrillation at acidic and physiological pH	4
Structure of the Borrelia burgdorferi ATP-dependent metalloprotease FtsH in its functionally relevant hexameric form	4
Structural basis of nuclear transport for NEIL DNA glycosylases mediated by importin-alpha	4
Drug–biomolecular interaction: Spectroscopic and computational insights into esomeprazole binding with human serum albumin	4
Mapping the Periostin splice isoforms in atopic dermatitis and an in vitro asthma model – A multi-platform analysis using mass spectrometry and RT-qPCR	3
Glycoproteomic characterization of Neuropilin-1 reveals critical glycosylation sites for SARS-CoV-2 entry	3
Native mass spectrometry for the investigation of protein structural (dis)order	3
Crystal structure of thymidine kinase from the multi-drug resistant col strain of Staphylococcus aureus	3

Structural conservation in the glutathione binding in Sphingomonas sp. glutaredoxin Grx3 and variations for cold adaptation	3
Native structure of the monoclonal therapeutic CD20 antibody ocrelizumab	3
Full-size recombinant ORF1p-L1 and RT domain of ORF2p-L1: Protein expression, purification and characterization	3
Enzymatic and biophysical characterization of a novel modular cellulosomal GH5 endoglucanase multifunctional from the anaerobic gut fungus Piromyces finnis	3
Identification of the interfacial regions in misfolded transthyretin oligomers	3
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	3
Nitrated products formed on α-synuclein are preferentially incorporated into oligomers but excluded from fibrils: A mechanism for accumulation of neurotoxic species	3
The Fe and Zn cofactor dilemma	3
The regulation of RGLG2-VWA by Ca2+ ions	3
LncRNA CERS6 - AS1 mediates the IGF2BP1/LIN28B axis to promote proliferation, migration and invasion in ovarian cancer	3
Structural insights into the mechanism underlying the dual cofactor specificity of glyoxylate reductase from Acetobacter aceti in the β-hydroxyacid dehydrogenase family	3
AttnSeq-PPI: Enhancing protein-protein interaction network prediction using transfer learning-driven hybrid attention	3
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	3
Integrated computational and biological assays to identify and validate L. donovani homoserine dehydrogenase inhibitors	3
Cytotoxicity originates at the amorphous intermediate stage during amyloid-like oligomerization of serum albumin under mild denaturing conditions	3
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	3
Electrochemical enzyme biosensing reveals differential abundance of GPI-anchored metalloprotease across Leishmania (Viannia) braziliensis subpopulations	3
Computing pathogenicity of mutations in human cytochrome P450 superfamily	3
Conformational and dynamic properties of the KH1 domain of FMRP and its fragile X syndrome linked G266E variant	3
Multifunctionality analysis of serine hydroxymethyltransferases from human and Escherichia coli	2
Understanding the mechanism of amylin aggregation: From identifying crucial segments to tracing dominant sequential events to modeling potential aggregation suppressors	2
Heterotypic liquid-liquid phase separation of tau and α-synuclein: Implications for overlapping neuropathologies	2
Structural basis for the allosteric behaviour and substrate specificity of Lactococcus lactis Prolidase	2
Incorporation of pyridoxal-5′-phosphate into the apoenzyme: A structural study of D-amino acid transaminase from Haliscomenobacter hydrossis	2
Classification of binding property of amyloid β to lipid membranes: Membranomic research using quartz crystal microbalance combined with the immobilization of lipid planar membranes	2
Insights into key kinase regulatory network of LARP1 based on co-occurring phosphorylation events	2
Structural insights of the complex formed by KRAS G12V and a novel TIG3 peptide	2
Structural characterization of the type I-B CRISPR Cas7 from Thermobaculum terrenum	2
Tracking heme biology with resonance Raman spectroscopy	2
Cd-induced cytosolic proteome changes in the cyanobacterium Anabaena sp. PCC7120 are mediated by LexA as one of the regulatory proteins	2
Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli	2
Mechanistic aspects of the transamination reactions catalyzed by D-amino acid transaminase from Haliscomenobacter hydrossis	2
Amyloid-β aggregates induced by β-cholesteryl glucose-embedded liposomes	1
Calcium dependence and biochemical characterization of metacaspase-3 from Trypanosoma cruzi	1
The explorations of dynamic interactions of paxillin at the focal adhesions	1
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	1
Investigations of pH-dependent dynamic properties of OmpG-16SL, an outer membrane protein G mutant by ATR-FTIR spectroscopy	1
Modulation of α-synuclein phase separation by biomolecules	1
Peptide from NSP7 is able to form amyloid-like fibrils: Artifact or challenge to drug design?	1
A dissected non-ribosomal peptide synthetase maintains activity	1
Robust assessment of sample preparation protocols for proteomics of cells and tissues	1
Editorial Board	1
Metaviromics analysis of marine biofilm reveals a glycoside hydrolase endolysin with high specificity towards Acinetobacter baumannii	1
Deciphering the structural attributes of PPAR-γ and SIRT1 to identify their dual activators using a combined molecular modeling approach	1
Assigning roles in Chlamydomonas ribosome biogenesis: The conserved factor NIP7	1
Biophysical characterization of human-cell-expressed, full-length κI O18/O8, AL-09, λ6a, and Wil immunoglobulin light chains	1
Deciphering the cleavage sites of 3C-like protease in Gammacoronaviruses and Deltacoronaviruses	1
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	1
The role of the N-terminal p.R56Q mutation in modulating oligomerization and chaperone activity of human αB-crystallin in relation to cardiomyopathy	1
Comparative proteomic profiling of advanced, injectable, and titanium-prepared platelet rich fibrins (PRF): Insights into functional divergence and clinical potential	1
Effect of tubulin self-association on GTP hydrolysis and nucleotide exchange reactions	1
Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores	1
DSP-1, the major fibronectin type-II protein of donkey seminal plasma is a small heat-shock protein and exhibits chaperone-like activity against thermal and oxidative stress	1
Arg236 in human chymotrypsin B2 (CTRB2) is a key determinant of high enzyme activity, trypsinogen degradation capacity, and protection against pancreatitis	1
Molecular dynamics simulations suggest Thiosemicarbazones can bind p53 cancer mutant R175H	1
Characterization of E121K mutation of D-amino acid oxidase – Insights into mechanisms leading to amyotrophic lateral sclerosis	1
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity	1
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	1
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	1
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	1
Efficient production of a novel recombinant fusion protein of EIEC effector IpaD and EGFP: Biophysical characterization and functional studies	1
Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores	1
A short structural extension dictates the early stages of folding of a PDZ domain	1
Biophysical analysis of SECIS binding protein 2 (SBP2) from Naegleria gruberi	1
Role of N-terminal of metacaspase of Candida albicans in calcium binding.	1
Self-association of Apolipoprotein A-I studied with multiple-association models: A pyrene multiparametric analysis	1