Biochimica et Biophysica Acta-Proteins and Proteomics

Article	Citations
Challenge to overcome current limitations of cell-penetrating peptides	74
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	68
Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway	60
Molecular and cellular dynamics of the 26S proteasome	38
Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores	37
Nucleophosmin, a multifunctional nucleolar organizer with a role in DNA repair	32
Low barrier hydrogen bonds in protein structure and function	31
d-Alanine: Distribution, origin, physiological relevance, and implications in disease	30
Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients	29
Calpains for dummies: What you need to know about the calpain family	27
Deficit of human ornithine aminotransferase in gyrate atrophy: Molecular, cellular, and clinical aspects	27
Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions	24
Cerebrospinal fluid and serum d-serine concentrations are unaltered across the whole clinical spectrum of Alzheimer's disease	22
d-serine in physiological and pathological brain aging	22
Advancing d-amino acid-containing peptide discovery in the metazoan	21
Proteomic advances in salivary diagnostics	20
Dysfunctional d-aspartate metabolism in BTBR mouse model of idiopathic autism	20
A unifying framework for amyloid-mediated membrane damage: The lipid-chaperone hypothesis	20
Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents	17
Recent technological developments for native mass spectrometry	16
Molecular simulations of proteins: From simplified physical interactions to complex biological phenomena	16
Update on relevant trypanosome peptidases: Validated targets and future challenges	16
Proteomics in thyroid cancer and other thyroid-related diseases: A review of the literature	15
Mechanisms of DNA−protein cross-link formation and repair	15
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	14

Mass spectrometry-based proteomics analyses of post-translational modifications and proteoforms in human pituitary adenomas	14
Characterization of large intact protein ions by mass spectrometry: What directions should we follow?	14
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	14
Stage-specific protein regulation during somatic embryo development of Carica papaya L. ‘Golden’	13
Modulation of α-synuclein phase separation by biomolecules	12
Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions	12
Single-cell proteomics: A treasure trove in neurobiology	12
Ubiquitin ligase Cbl-b and inhibitory Cblin peptides	11
Pathological cardiac remodeling seen by the eyes of proteomics	11
Ceruloplasmin and oxidative stress in severe eosinophilic asthma patients treated with Mepolizumab and Benralizumab	11
Human cathepsin X/Z is a biologically active homodimer	10
OMA1—An integral membrane protease?	10
Target enzymes are stabilized by AfrLEA6 and a gain of α-helix coincides with protection by a group 3 LEA protein during incremental drying	10
Analysis of Hashimoto's thyroiditis on fine needle aspiration samples by MALDI-Imaging	10
Recent advances in proteomics and its implications in pituitary endocrine disorders	10
Crystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors	10
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	9
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	9
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	9
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	9
Effect of active-site aromatic residues Tyr or Phe on activity and stability of glucose 6-phosphate dehydrogenase from psychrophilic Arctic bacterium Sphingomonas sp.	9
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	9
Decipher the connections between proteins and phenotypes	8
AbsoluRATE: An in-silico method to predict the aggregation kinetics of native proteins	8
Amyloid fibril formation by αS1- and β-casein implies that fibril formation is a general property of casein proteins	8
Crystal structure of a chitinase (RmChiA) from the thermophilic fungus Rhizomucor miehei with a real active site tunnel	8
Quantitative profiling of axonal guidance proteins during the differentiation of human neurospheres	8
Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant	8
Prediction of membrane protein types by fusing protein-protein interaction and protein sequence information	8
Structural foundations of sticholysin functionality	8
Arg236 in human chymotrypsin B2 (CTRB2) is a key determinant of high enzyme activity, trypsinogen degradation capacity, and protection against pancreatitis	8
Quantitative proteomics and phosphoproteomics of Trypanosoma cruzi epimastigote cell cycle	7
Native mass spectrometry for the investigation of protein structural (dis)order	7
The nuclear localization sequence of the epigenetic factor RYBP binds to human importin α3	7
The impact of blood-processing time on the proteome of human peripheral blood mononuclear cells	7
Immune response pattern across the asymptomatic, symptomatic and convalescent periods of COVID-19	7
Protein oxidation marker, α-amino adipic acid, impairs proteome of differentiated human enterocytes: Underlying toxicological mechanisms	7
Designer D-peptides targeting the N-terminal region of α-synuclein to prevent parkinsonian-associated fibrilization and cytotoxicity	7
Dual effect of 2D WS2 nanoparticles on the lysozyme conformation	7
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	7
SopD from Salmonella specifically inactivates Rab8	7
Phosphopantetheine Adenylyltransferase: A promising drug target to combat antibiotic resistance	6
Aggregation kinetics of the protein photoreceptor Vivid	6
Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations	6
Structural mass spectrometry of membrane proteins	6
Molecular trait of follicular-patterned thyroid neoplasms defined by MALDI-imaging	6
Isobenzofuran-1(3H)-ones as new tyrosinase inhibitors: Biological activity and interaction studies by molecular docking and NMR	6
The explorations of dynamic interactions of paxillin at the focal adhesions	6
In silico analysis of the aggregation propensity of the SARS-CoV-2 proteome: Insight into possible cellular pathologies	6
Apolipoprotein E4 exhibits intermediates with domain interaction	6

Structurally plastic NEMO and oligomerization prone IKK2 subunits define the behavior of human IKK2:NEMO complexes in solution	6
Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cells	6
Steady-state kinetic analysis of human cholinesterases over wide concentration ranges of competing substrates	5
Crystal structure and physicochemical characterization of a phytocystatin from Humulus lupulus: Insights into its domain-swapped dimer	5
The armadillo-repeat domain of Plakophilin 1 binds to human enzyme PADI4	5
Enzymatic properties of Myxococcus xanthus exopolyphosphatases mxPpx1 and mxPpx2	5
Revisiting the stem proteome of Eucalyptus grandis and Eucalyptus globulus: Identification of temperature-induced changes	5
Structures and mechanisms of formation of liprotides	5
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	5
Functional and structural characterization of an α-ʟ-arabinofuranosidase from Thermothielavioides terrestris and its exquisite domain-swapped β-propeller fold crystal packing	5
A crucial residue in the hydrophobic core of the solenoid structure of leucine rich repeats	5
Targeting protein tyrosine phosphatases for the development of antivirulence agents: Yersinia spp. and Mycobacterium tuberculosis as prototypes	5
AP sites in various mRNA positions cross-link to the protein uS3 in the translating mammalian ribosome	5
The Fe and Zn cofactor dilemma	5
Determination of phenylalanine enantiomers in the plasma and urine of mammals and ᴅ-amino acid oxidase deficient rodents using two-dimensional high-performance liquid chromatography	5
Understanding the mechanism of amylin aggregation: From identifying crucial segments to tracing dominant sequential events to modeling potential aggregation suppressors	5
Mapping human calreticulin regions important for structural stability	5
Metaviromics analysis of marine biofilm reveals a glycoside hydrolase endolysin with high specificity towards Acinetobacter baumannii	5
Analysis of ovarian cancer cell secretome during epithelial to mesenchymal transition reveals a protein signature associated with advanced stages of ovarian tumors	5
Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study	5
An assay procedure to investigate the transformation of toxic heme into inert hemozoin via plasmodial heme detoxification protein	4
Characterisation of the forest cobra (Naja melanoleuca) venom using a multifaceted mass spectrometric-based approach	4
Determination of terminal glycan and total monosaccharide profiles of reelin glycoprotein in SH-SY5Y neuroblastoma cell line by lectin blotting and capillary liquid chromatography electrospray ionizat	4
Proteomic insights into protostane triterpene biosynthesis regulatory mechanism after MeJA treatment in Alisma orientale (Sam.) Juz.	4
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	4
d-Aspartate N-methyltransferase catalyzes biosynthesis of N-methyl-d-aspartate (NMDA), a well-known selective agonist of the NMDA receptor, in mice	4
Effect of tubulin self-association on GTP hydrolysis and nucleotide exchange reactions	4
Detection of key sites of dimer dissociation and unfolding initiation during activation of acid-stress chaperone HdeA at low pH	4
New insights into short peptides derived from the collagen NC1 α1, α2, and α3 (IV) domains: An experimental and MD simulations study	4
Chemical proteomics approaches for protein post-translational modification studies	4
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	4
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	4
Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking	4
Gamma cleavage is a rate-determining step in the gamma-elimination reaction of L-methionine analogues catalyzed by methionine-gamma-lyase	4
Proteomic changes in Trypanosoma cruzi epimastigotes treated with the proapoptotic compound PAC-1	4
A conserved π-helix plays a key role in thermoadaptation of catalysis in the glycoside hydrolase family 4	4
The DEAD-box RNA helicase eIF4A1 interacts with the SWI2/SNF2-related chromatin remodelling ATPase DDM1 in the moss Physcomitrella	4
Dissecting the structural features of β-arrestins as multifunctional proteins	4
Phosphoproteome of signaling by ErbB2 in ovarian cancer cells	4
Computational prediction and analysis of histone H3k27me1-associated miRNAs	4
Design and Applications of Bifunctional Small Molecules in Biology	4
Human serine racemase is inhibited by glyceraldehyde 3-phosphate, but not by glyceraldehyde 3-phosphate dehydrogenase	3
Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound	3
Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry	3
Fast photochemical oxidation of proteins coupled with mass spectrometry	3
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	3
Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity	3
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	3
Elucidating the inhibitory effects of rationally designed novel hexapeptide against hen egg white lysozyme fibrillation at acidic and physiological pH	3
Modulation of the carbohydrate-binding specificity of two Xenopus proto-type galectins by site-directed mutagenesis	3
Comparison of force fields to study the zinc-finger containing protein NPL4, a target for disulfiram in cancer therapy	3
The protease associated (PA) domain in ScpA from Streptococcus pyogenes plays a role in substrate recruitment	3
Characterization of E121K mutation of D-amino acid oxidase – Insights into mechanisms leading to amyotrophic lateral sclerosis	3
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	3
Structural and functional characterisation of Tst2, a novel TRPV1 inhibitory peptide from the Australian sea anemone Telmatactis stephensoni	3
Discovery of Klf2 interactors in mouse embryonic stem cells by immunoprecipitation-mass spectrometry utilizing exogenously expressed bait	3
Heterotypic liquid-liquid phase separation of tau and α-synuclein: Implications for overlapping neuropathologies	3
Electrochemical characterization of mutant forms of rubredoxin B from Mycobacterium tuberculosis	3
Kinetic characterization and thermostability of C. elegans cytoplasmic and mitochondrial malate dehydrogenases	3
Probing the role of Val228 on the catalytic activity of Scytalidium catalase	3
His180 in the pore-lining α4 of the Bacillus thuringiensis Cry4Aa δ-endotoxin is crucial for structural arrangements of the α4-α5 transmembrane hairpin and hence biotoxicity	3
The degradation of intracrystalline mollusc shell proteins: A proteomics study of Spondylus gaederopus	3
Structural analysis of cysteine-free Nt.BspD6 nicking endonuclease and its functional features	2
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	2
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle	2
Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores	2
Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe	2
Crystal structure of the Cys-NO modified YopH tyrosine phosphatase	2
Assessing the Martini 3 protein model: A review of its path and potential	2
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	2
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	2
Determination and evaluation of secondary structure content derived from calcium-induced conformational changes in wild-type and mutant mnemiopsin 2 by synchrotron-based Fourier-transform infrared spe	2
Proteomics and its application in endocrine disorders	2
Antibody binding increases the flexibility of the prion protein	2
Profilings of subproteomes of lectin-binding proteins of nine Bothrops venoms reveal variability driven by different glycan types	2
Antibodies and α-synuclein: What to target against Parkinson's Disease?	2
Characterisation of trehalose-6-phosphate phosphatases from bacterial pathogens	2
Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition	2
Biomolecular NMR in the AI-assisted structural biology era: Old tricks and new opportunities	2
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	2

Effect of flavonoids on the destabilization of α-synuclein fibrils and their conversion to amorphous aggregate: A molecular dynamics simulation and experimental study	2
The distinct N-terminomes of Bothrops jararaca newborn and adult venoms	2
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	2
Genome-wide and structural analysis of the Myb-SHAQKYF family in Entamoeba histolytica	2
The significance of D-amino acids in the homochiral world of life	2
Interaction of lipid-free apolipoprotein A-I with cholesterol revealed by molecular modeling	2
Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction	2
Increased chaperone activity of human α‌B-crystallin with incomplete oxidation as a new defense mechanism against oxidative stress	2
Investigations of pH-dependent dynamic properties of OmpG-16SL, an outer membrane protein G mutant by ATR-FTIR spectroscopy	2
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	2
Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding	2
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	2