OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Proteins and Proteomics is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	76
The regulation of the thermal stability and affinity of the HSPA5 (Grp78/BiP) by clients and nucleotides is modulated by domains coupling	60
Co-chaperonin GroES subunit exchange as dependent on time, pH, protein concentration, and urea	47
Proteomics and its application in endocrine disorders	36
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	27
Active roles of lytic polysaccharide monooxygenases in human pathogenicity	26
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100	24
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	23
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	18
Chemical proteomics approaches for protein post-translational modification studies	18
Analysis of ovarian cancer cell secretome during epithelial to mesenchymal transition reveals a protein signature associated with advanced stages of ovarian tumors	17
Beta-KTx14.3, a scorpion toxin, blocks the human potassium channel KCNQ1	17
Aggregation kinetics of the protein photoreceptor Vivid	17
AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center	16
The oxidative nuclease activity of human cytochrome c with mutations in Ω-loop C/D	13
Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition	12
Structure and functional studies of Avt1, a novel peptide from the sea anemone Aulactinia veratra	12
Binding interactions in a kinase active site modulate background ATP hydrolysis	12
Epitope mapping of SARS-CoV-2 RBDs by hydroxyl radical protein footprinting reveals the importance of including negative antibody controls	12
An intermolecular hydrogen bonded network in the PRELID-TRIAP protein family plays a role in lipid sensing	12
Editorial Board	11
Editorial Board	11
A single amino acid difference between archaeal and human type 2 methionine aminopeptidases differentiates their affinity towards ovalicin	11
Editorial Board	10
Modulation of the carbohydrate-binding specificity of two Xenopus proto-type galectins by site-directed mutagenesis	10

Structural and biophysical characterization of the selenoprotein SelW1 from Chlamydomonas reinhardtii	10
Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking	10
Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction	10
Uncovering the membrane-integrated SecAN protein that plays a key role in translocating nascent outer membrane proteins	10
Plumbagin accelerates serum albumin's amyloid aggregation kinetics and generates fibril polymorphism by inducing non-native β-sheet structures	10
Profilings of subproteomes of lectin-binding proteins of nine Bothrops venoms reveal variability driven by different glycan types	9
Recent technological developments for native mass spectrometry	9
The N93D mutation of the human T-cell leukemia virus type 1 envelope glycoprotein found in symptomatic patients enhances neuropilin-1 b1 domain binding	9
Bacteriophage-encoded chaperonins stimulate prion protein fibrillation in an ATP-dependent manner	9
Importance of aspartate 4 in the Mg2+ dependent regulation of Leishmania major PAS domain-containing phosphoglycerate kinase	8
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	8
Editorial Board	8
Editorial Board	8
Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study	7
Exploring liquid-liquid phase separation in the organisation of Golgi matrix proteins	7
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	7
His180 in the pore-lining α4 of the Bacillus thuringiensis Cry4Aa δ-endotoxin is crucial for structural arrangements of the α4-α5 transmembrane hairpin and hence biotoxicity	7
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	7
AP sites in various mRNA positions cross-link to the protein uS3 in the translating mammalian ribosome	7
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	7
FunPredCATH: An ensemble method for predicting protein function using CATH	7
The distinct N-terminomes of Bothrops jararaca newborn and adult venoms	7
Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin	6
Kinetic characterization and thermostability of C. elegans cytoplasmic and mitochondrial malate dehydrogenases	6
Editorial Board	6
The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans	6
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	6
Editorial Board	6
Propagation of conformational instability in FK506-binding protein FKBP12	6
Calpains for dummies: What you need to know about the calpain family	5
The “Wave” of Brazilian proteomics	5
Immune response pattern across the asymptomatic, symptomatic and convalescent periods of COVID-19	5
Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe	5
Editorial Board	5
Editorial Board	5
Corrigendum to “Mass spectrometry analysis of the oxidation states of the pro oncogenic protein anterior gradient-2 reveals covalent dimerization via an intermolecular disulphide bond” [Biochimica et	5
The structural basis of conserved residue variant effect on enzyme activity of UGT2B15	5
Editorial Board	5
Editorial Board	5
Crystal structure of the Cys-NO modified YopH tyrosine phosphatase	5
Investigation on a MMACHC mutant from cblC disease: The c.394C>T variant	5
Gamma cleavage is a rate-determining step in the gamma-elimination reaction of L-methionine analogues catalyzed by methionine-gamma-lyase	5
Editorial Board	5
Structure of the Borrelia burgdorferi ATP-dependent metalloprotease FtsH in its functionally relevant hexameric form	5
Human apo-metallothionein 1a is not a random coil: Evidence from guanidinium chloride, high temperature, and acidic pH unfolding studies	4
Structural basis of nuclear transport for NEIL DNA glycosylases mediated by importin-alpha	4
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	4
Editorial Board	4
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	4
Structural mass spectrometry decodes domain interaction and dynamics of the full-length Human Histone Deacetylase 2	4

The apo-acyl coenzyme A binding protein of Leishmania major forms a unique ‘AXXA’ motif mediated dimer	4
The effect of denaturants on protein thermal stability analyzed through a theoretical model considering multiple binding sites	4
Identification of potential pharmacological chaperones that selectively stabilize mutated Aspartoacylases in Canavan disease	4
Editorial Board	4
Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity	4
Elucidating the inhibitory effects of rationally designed novel hexapeptide against hen egg white lysozyme fibrillation at acidic and physiological pH	4
Recent advances in proteomics and its implications in pituitary endocrine disorders	4
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	4
The Fe and Zn cofactor dilemma	4
Biochemical and biophysical features of disease-associated tau mutants V363A and V363I	4
Structural conservation in the glutathione binding in Sphingomonas sp. glutaredoxin Grx3 and variations for cold adaptation	3
Electrochemical characterization of mutant forms of rubredoxin B from Mycobacterium tuberculosis	3
Conformational and dynamic properties of the KH1 domain of FMRP and its fragile X syndrome linked G266E variant	3
Structural insights into the mechanism underlying the dual cofactor specificity of glyoxylate reductase from Acetobacter aceti in the β-hydroxyacid dehydrogenase family	3
The regulation of RGLG2-VWA by Ca2+ ions	3
Understanding the mechanism of amylin aggregation: From identifying crucial segments to tracing dominant sequential events to modeling potential aggregation suppressors	3
Classification of binding property of amyloid β to lipid membranes: Membranomic research using quartz crystal microbalance combined with the immobilization of lipid planar membranes	3
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	3
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	3
Heterotypic liquid-liquid phase separation of tau and α-synuclein: Implications for overlapping neuropathologies	3
Editorial Board	3
Identification of the interfacial regions in misfolded transthyretin oligomers	3
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	3
Cd-induced cytosolic proteome changes in the cyanobacterium Anabaena sp. PCC7120 are mediated by LexA as one of the regulatory proteins	3
Target enzymes are stabilized by AfrLEA6 and a gain of α-helix coincides with protection by a group 3 LEA protein during incremental drying	3
Mapping the Periostin splice isoforms in atopic dermatitis and an in vitro asthma model – A multi-platform analysis using mass spectrometry and RT-qPCR	3
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	3
Enzymatic and biophysical characterization of a novel modular cellulosomal GH5 endoglucanase multifunctional from the anaerobic gut fungus Piromyces finnis	3
Structural foundations of sticholysin functionality	3
Native mass spectrometry for the investigation of protein structural (dis)order	3
Mutation effects on FAS1 domain 4 based on structure and solubility	3
Uncovering the structure-function aspects of an archaeal CsaA protein	3
Steady-state kinetic analysis of human cholinesterases over wide concentration ranges of competing substrates	2
Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli	2
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	2
Tracking heme biology with resonance Raman spectroscopy	2
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	2
Modulation of α-synuclein phase separation by biomolecules	2
Probing the role of Val228 on the catalytic activity of Scytalidium catalase	2
SopD from Salmonella specifically inactivates Rab8	2
Editorial Board	2
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	2
Structural analysis of cysteine-free Nt.BspD6 nicking endonuclease and its functional features	2
Incorporation of pyridoxal-5′-phosphate into the apoenzyme: A structural study of D-amino acid transaminase from Haliscomenobacter hydrossis	2
Editorial Board	2
Structural basis for the allosteric behaviour and substrate specificity of Lactococcus lactis Prolidase	2
A glimpse on the architecture of hnRNP C1/C2 interaction network in cultured oligodendrocytes	2
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	2
The explorations of dynamic interactions of paxillin at the focal adhesions	2
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	2
Structural characterization of the type I-B CRISPR Cas7 from Thermobaculum terrenum	2
A crucial residue in the hydrophobic core of the solenoid structure of leucine rich repeats	2
Mechanistic aspects of the transamination reactions catalyzed by D-amino acid transaminase from Haliscomenobacter hydrossis	2
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	2
Deciphering the cleavage sites of 3C-like protease in Gammacoronaviruses and Deltacoronaviruses	2
Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding	2