Current Proteomics

Article	Citations
S100A8 and S100A9–Critical Mediators of Inflammation in Arthritis	16
Cloning, Expression and Biochemical Characterization of the Recombinant α-amylase from Bacillus subtilis YX48	14
Exploration of atractylenolide III targeting MDM2/p53 axis in breast cancer cell progression based on network pharmacology, molecular docking and ubiquitination analysis	11
Identification of key fatty acid metabolism genes and lncRNAs in Tibial cortex transverse traction therapy for diabetic foot Ulcers	9
Characterization of a New Hypotensive Peptide from the Venom of Snake Bothrops jararaca (Bj)	8
The Effect of N52R Mutation at the SPN-ARR Interface on the Conformational Dynamics of SHANK3	8
Deep Learning for the Prediction of Protein Sequence, Structure, Function, and Interaction: Applications, Challenges, and Future Directions	7
Applications and challenges of tear proteomics in unveiling the molecular mechanisms and biomarkers of dry eye disease	7
Proteomic Analysis of the Molecular Mechanisms of Chlorpromazine Inhibiting Migration of Oral Squamous Cell Carcinoma	6
StemRegenin-1 Reverses Drug Resistance of MCF-7/ADR Cells via AhR/ABC Transports and AhR/UGTs Pathways	6
Pilot Study of the Ex Vivo Blood Leukocytes’ Proteomic Response to Prednisone Stimulation in Corticosteroid-responsive Asthma	6
LINC00839, LINC01671, AC093673 and AC008760 are Associated with the Prognosis and Immune Infiltration of Clear-cell Renal Cell Carcinoma	6
The progress and prospects of single-cell sequencing, multi-omics integration analysis, and immunotherapy targeting strategies in lung cancer research	5
Bioinformatics Method Predicts Hantavirus Disrupts Vascular Permeability to Invade Cells Violently by Fibrocystin Hydrolase and PTEN/Gtpase-Like System	4
Identification of a Ubiquitination‑Related Signature for Ovarian Cancer Based on 101 Combinations of Machine Learning Methods	4
miR-124 in Neuroblastoma: Mechanistic Insights, Biomarker Potential, and Therapeutic Prospects	4
Identification of Novel Biomarkers for Post-Kasai Portoenterostomy in Biliary Atresia through Shotgun Proteomics Analysis	4
RNA Sequencing of A2780 Cells Treated with CCL2 Identified Genes Associated with A2780 Cell Growth	4
Identifying Prostaglandin D2 Synthase in Urine: A Potential Biomarker for Bladder Cancer	4
Agar-Agar Matrix-Mediated Immobilization for Enhanced Catalytic Behavior and Stability of 1,4-α-D-Glucan Glucanohydrolase Obtained from Halotolerant Micrococcus spp. K11	4
Emerging role of tumor associated macrophages in pan-tumor progression: Biological mechanisms to clinical application	4
Meet the Editorial Board Member	4
Deciphering Rab32-associated antibacterial responses: Proteomics reveals the heterogeneity of macrophage defense against bacterial pathogen infection	4
Advances in the combination of immunotherapy and radiotherapy for microsatellite-stable metastatic colorectal cancer	4
Evaluation of the Interaction between Ricin Protein and Quercetin using Different Analytical Methods	3

PanCanSurvPlot: A large-scale pan-cancer survival analysis web application	3
Proteomic analysis reveals the expression and impact of PRDX2 in ovarian cancer tissues	3
A Novel Platform for Protein Post-translational Modifications based on a High-density Antibody Array	3
Circulating Exosomes Studied by Label-free Proteomics Analysis Reveal Transition Signatures from Diabetes Mellitus to Diabetic Kidney Disease	3
Advances in machine learning for optimizing pharmaceutical drug discovery	3
Structural Insight into Wild Type of Arginine Deiminase Protein and its Three Mutated Versions in Complex with Arginine Molecule: A Computational Approach	2
Integration of Proteomic Data Obtained from the Saliva of Children with Caries through Bioinformatic Analysis	2
Developing Multi-epitope Antigen Construct from Immunodominant Proteins for Serological Diagnosis of Chlamydia trachomatis: An In Silico Approach	2
Proteome Profiling of Serum Exosomes from Newborns Delivered by Mothers with Preeclampsia	2
In silico Investigation on the Structural Insights into the Binding of Squalamine Inhibitor with Membrane-bound Α-Synuclein	2
NaturePred: A Tool for Revolutionizing Natural Product Classification with Artificial Intelligence	2
Proteomics and metabolomics analysis of Mongolian acupuncture therapy for type 2 diabetes mellitus with atherosclerosis	2
In Vitro and In Silico Evaluation of Caffeic and Ferulic Acids Involvement in the Translocation of Glucose Transporter 4	2
Comparison of Structural Stability of Monomeric and Dimeric Forms of Bovine Seminal Ribonuclease Using Molecular Dynamics Simulation	2
PCM1: A Potential Prognostic Biomarker Correlated with Immune Infiltration in Lung Adenocarcinoma	2
Immune checkpoint modulators in cancer immunotherapy from inhibition to activation	2
Current Understanding of Dried Spots Platform for Blood Proteomics	2
Proteomics and Computational Analysis of Cytosolic Proteome of a Thermoacidophilic Euryarchaeon, Picrophilus torridus	2
Identification of Novel PBP2B Protein Inhibitors against Streptococcus pneumoniae in Marine Natural Products using an In-Silico Approach	2
Analysis of Membrane Proteins of Streptomycin-Resistant Mycobacterium tuberculosis Isolates	2
Two Novel Peptides from Buthotus saulcyi Scorpion Venom: Proteomic Analysis and Approaches	2
NSUN2/FOXM1 positive feedback pathway promotes the malignant development of non-small cell lung cancer	2
Applications of artificial intelligence and large language models in cancer immunotherapy	2
Molecular Docking, Pharmacophore Mapping, and Virtual Screening of Novel Glucokinase Activators as Antidiabetic Agents	1
Identification of Disease-Protein Associations from a Heterogeneous Network Using Graph Embedding and Sample Screening Algorithms	1
Interaction of C-terminal Truncated Beta-amyloid Peptides with Human Serum Albumin	1
Immune biomarkers as key targets in managing tuberculosis: A systematic review	1
MCM2, AURKA and MCM6: potential diagnostic biomarkers for cervical cancer	1
Corrigendum to: Cancer Proteomics: New Horizons and Insights into Therapeutic Applications	1
Serum Proteomics Reveals Differential Proteins between Individuals with Vestibular Migraine and Healthy Subjects	1
Proteomics Response of Photosynthetic Machinery to Abiotic Stresses: A Review	1
LncRNA SH3BP5-AS1 Regulates the Proliferation and Cell Cycle of Non-Small Cell Lung Cancer Cells	1
Proteomic Analysis of Tumor-specific Biomarkers in Colon Cancer	1
ORF7a Palsies Macrophage to Worsen Diabetes by SMB/BPI/ABC Domains and PARP/Cap/Cyclin Enzyme System	1
Targeting the unexplored 'dark proteome': Novel approaches in drug discovery	1
GRHL3 promotes tumor growth and metastasis via the TGF-β signaling pathway in human epithelial ovarian cancer	1
Proteomic Profile Analysis of Pulmonary Artery in a Rat Model Under Hypoxic Pulmonary Hypertension	1
Protein Profiling of Hirudo orientalis During Different Seasons for Obtaining Accurate Results in Leech Therapy	1
A Complete Sojourn of Monoclonal Antibodies: AI, Rare Diseases / Disorders and Immunotoxic Effects	1
Isolupalbigenin as a multi-target natural scaffold targeting HER2, EGFR, IGF-1R, and BCL-2 in breast cancer: An integrated docking, molecular dynamics, and DFT study	1
Label-free and TMT-labeled Proteomics Methods to Compare Differences on Normal and Attached Livers of Glyptosternum maculatum	1
Identification of Human Protein Subcellular Location with Multiple Networks	1
H-GWNN: A Population Graph-Based Autism Spectrum Disorders Identification Framework for Tackling Data Heterogeneity	1
Small Peptides Inhibition of SARS-CoV-2 Mpro via Computational Approaches	1
Proteomic Profiling of Maternal Serum for Early Risk Analysis of Preterm Birth	1
SP1-mediated WTAP exacerbates the progression of colon adenocarcinoma by m6A methylation of KLK8	1
The Use of New Omics Techniques for Natural Products to Improve Drug Efficiency and Mechanism	1
Computational Analysis and Inhibition Study of Carbonic Anhydrase from Azadirachta indica Leaves	0
An in-silico approach for structural and functional annotation of an uncharacterized protein of human papillomavirus (HPV)	0
Decoding Glycobiomarkers in Non-Alcoholic Steatohepatitis (NASH) and Related Hepatocellular Carcinoma (HCC)	0

Predicting Membrane Protein Types Based on Fusing Information Feature and Ensemble Machine Learning Model	0
The expanding tool landscape of proteomics: From high-throughput quantification to intelligent data analysis	0
In silico design and evaluation of a multi-epitope vaccine targeting SARS-CoV-2 structural proteins	0
Investigating the Effectiveness of Natural Analogs and Different Metabolites of Curcumin for the Inhibition of the Influenza Virus Proteins in a Simulated Environment	0
Nanotechnology-Driven Approaches for Targeted Rectal Microbiome Modulation in Gastrointestinal Disorders	0
Acknowledgements to Reviewers	0
Osteoarthritis: Insights into Potential Causes and Biomarkers from Articular Fluid Metabonomics	0
An Evolutionary Attributes of OMP33-36 in Acinetobacter baumannii: In silico Based Analysis	0
Elucidation of EhSec1 and Interaction with EhSyntaxin1A /1B of Entamoeba Histolytica via Docking and Molecular Simulations	0
Leukemia stem cell differentiation in acute myeloid leukemia: Molecular mechanisms and multi-omics insights	0
Designing a Novel Multi-epitope Peptide as a Potential Serodiagnosis Marker for the Diagnosis of Acinetobacter baumannii: An In silico Approach	0
Integrated Analysis of the Proteome Datasets Using the Assembled Genome Sequence Provides New Insights into the Specialization of Shoots, Stolons, and Rhizomes in Bermudagrass (Cynodon dactylon L.)	0
Reframing cell death: Unveiling interactions and synergistic mechanisms in tumor immunity	0
Etomidate alleviates PM2.5-induced cardiomyocyte injury by increasing the expression of HSCB based on transcriptome analysis	0
Advances in bioinformatics techniques for ophthalmic diseases	0
Incretin Hormones: Mechanisms, Therapeutic Implications, and Future Directions in Glucose Regulation and Diabetes Management	0
Annotation-Based Study on Hypothetical Proteins in Bacteria Using Classification Features	0
Acknowledgements to Reviewers	0
Comprehensive Analysis of Tertiary Lymphoid Structures in Pancreatic Cancer: Molecular Characteristics and Prognostic Implications	0
Immunoprotective Potential of Adenylosuccinate Synthetase Protein (PurA) in Streptococcus equi ssp. zooepidemicus Infections	0
Comparative Clinical, Proteomic, and Serologic Evaluation in Non-Hospitalized COVID-19 Patients and Healthy Individuals	0
Preface	0
An Immunoinformatic Approach to Designing a Multi-epitope Vaccine against Helicobacter pylori with the VacA Toxin and BabA Adhesion	0
Proteomic Analysis of Early Phosphorylated Proteins in Acute Pancreatitis Model	0
Identification of Potential Necroptosis Inhibitors using Pharmacophore Model: An In-silico Approach	0
Predicting and Validating the Mechanism of Action of the Enema Formula in Treating Colorectal Cancer by Using Network Pharmacology, GEO, and TCGA Databases	0
Preface	0
The characterization and immunoinformatic analysis of HN and F genes from the first reported XIII.2.1 Newcastle disease virus sub-genotype in Iran	0
Antioxidant defense gene expression associated with lung cancer pathology: implications for diagnostic and therapeutic targets	0
Higher Abundance of Vitronectin (S-protein) in Serum-derived Exosomes of Pulmonary and Extra-Pulmonary Tuberculosis Patients as Compared to HIV-Tuberculosis Dual-infected Patients and Healthy Humans	0
Identification of Potential Immunogenic Epitopes Against SARS-CoV-2 Using In-Silico Method: An Immunoinformatics Study	0
Unraveling Major Proteins of Mycobacterium tuberculosis Envelope	0
Meet the Editorial Board Member	0
Advances in Research on Adropin: Potential Implications for Clinical Diagnosis and Possible Treatment – A Mini-Review	0
AraMultiOmics: A Platform for Generating Multi-Omics Features for Studying Symbiosis in Arabidopsis thaliana and Arbuscular Mycorrhizal Fungi	0
The Efficacy and Safety Analysis of the Bendamustine, Pomalidomide, and Dexamethasone (BPD) Combination Treatment for Patients with Proteasome Inhibitor Intolerance and/or Relapsed Multiple Myeloma	0
Determination of FGFR1 Functions in Cytarabine Treatment of Acute Myeloid Leukemia Through Bioinformatics Analysis	0
Relationship of Antiviral Proteins with Retroelements in the Brain in Pathogenesis of Neurodegenerative Diseases	0
A Motif in Metallopeptidase Inhibitor Decreases Effectively the Activity of Macrophage Metalloproteinases	0
CovidLLM: A Robust Large Language Model with Missing Value Adaptation and Multi-Objective Learning Strategy for Predicting Disease Severity and Clinical Outcomes in COVID-19 Patients	0
The Relationship of Transposable Elements with Non-Coding RNAs in the Emergence of Human Proteins and Peptides	0
Molecular Mechanisms of Antiproliferative Effects of Safranal on Cervical Cancer: Evidence from Bioinformatics Analysis	0
Metabolomics of Meat Color: Practical Implications	0
In Silico Analysis of Antarctic Rhomboid Proteases (Rho): Unveiling Protein Structure and Evolution	0
Design and synthesis of heterocyclic biphenyl-resultant novel pyrazole scaffolds: In-vitro and In-silico studies for potent antimicrobial agents	0
Plasma Apolipoprotein-AIV Downregulated in Patients with Major Depressive Disorder having Suicidal Ideation Compared to those without Suicidal Ideation	0
Curcumin inhibits Annexin A1 signaling to promote neuronal survival and functional recovery after ischemic stroke	0
Knockdown of miR-135a-5p Promotes Mitophagy by Regulating FoxO1/PINK1/Parkin Signaling in Hepatoma Cells Exposed to Oxidative Stress	0
Multi-omics analysis reveals molecular characteristics and potential therapeutic targets of primary central nervous system lymphoma	0
Decoding disorder: Advances in predicting intrinsically disordered proteins	0
Machine learning-based classification of viral membrane proteins	0
Comprehensive omics profiling in acute myeloid leukemia: From molecular landscape to clinical translation	0
Silencing of KLF9 alleviates palmitic acid-induced insulin resistance and inflammation in undifferentiated myoblasts by targeting GRB14, unveiling a pathogenic axis in Type 2 diabetic myopathy	0
In-silico Analysis of Peroxidase from Raphanus Sativus	0
Recent Trends in Machine Learning-Based Computational Biology and Digital Medicine	0
Elucidating the therapeutic mechanisms of Angelica dahurica in knee osteoarthritis: An integrative network pharmacology and molecular docking approach	0
The Study of Different Signal Peptides in Improvement of Recombinant Proteins Solubility in E. coli: A Review Article	0
Study on the Role of Human Gut Microbiome in Controlling MRSA-Induced Sepsis Using Proteomics Tool	0
Compounds isolated from Rhabdophyllum arnoldianum: promising new molecules for cancer treatment through their inhibitory properties on tyrosine kinases and dihydrofolate reductase, revealed by molecul	0
Lipopolysaccharide activates platelet via the TLR4/MYD88 pathway to protect against bacterial lung injury	0
In silico Analysis of Maize Spermidine Synthase: Detailed Insights from Substrate Docking Studies	0
Proteomics, Peptidomics and Transcriptomic Analysis of the Venom from the Spider Macrothele yani (Mygalomorphae: Macrothelidae)	0
Proteome Profiling of Serum Exosomes from Newborns with Lung Injury after Perinatal Asphyxia	0
Effects of Chronic Cold Exposure on Proteomics of Lung Tissue in Mice	0
Structure-based virtual screening and molecular dynamics simulation for the identification of novel potential inhibitors for the NDM-1 of Klebsiella Pneumoniae from the marine natural products	0
Proteomics of the Skin Secretion of Pulchrana glandulosa (Anura: Ranidae) (Boulenger, 1882), Langkawi Island, Kedah, Peninsular Malaysia	0
A research status and prospects of edible fungal-derived fibrinolytic enzymes: breakthroughs based on multi-omics and intelligent delivery technologies	0
Proteome provides a full map on the physiology and mechanism of the gastrointestinal tract in humans and rodents	0
Methanol and Sorbitol Affect the Molecular Dynamics of Arginine Deiminase: Insights for Improving its Stability	0
A Multimodal artificial intelligence framework for mechanistic discovery and digital twin construction in cardiovascular medicine	0
Predicting the Secondary Structure of Proteins: A Deep Learning Approach	0
Screening of immune-related secretory proteins linking primary Sjögren’s syndrome with pulmonary arterial hypertension based on comprehensive bioinformatics analysis and machine learning	0
Investigating PI3P Binding with Plasmodium Falciparum HSP70 Proteins	0
iTRAQ-Based Quantitative Proteomics Analysis Reveals the Invasion Mechanism of Spiroplasma eriocheiris in 3T6 Cells	0
Subcellular Proteomic Analysis Reveals Dysregulation in the Organization of Human A549 Cells Infected with Influenza Virus H7N9	0
Identification of Potential Drug Targets for Sleep Apnea Through Mendelian Randomization	0
Meet the Editorial Board Member	0
Docking and AI-based classification cum recurrent neural network validation for predicting anti-tubercular leads against dprE-1 enzyme targeter	0
Network Pharmacology and Computational Approach to Explore the Potential Underlying Mechanism of Centella asiatica in the Treatment of Diabetes Mellitus	0
A Pan-Cancer Signature For S100A11 - Prognostic And Immunotherapeutic Value	0

METTL14 stabilizes KLF6 through m6A methylation modification, thereby exacerbating neuronal injury induced by ischemia-reperfusion	0
Heavy Metal Stress Tolerance by Serratia nematodiphila sp. MB307: Insights from Mass Spectrometry-based Proteomics	0
Meet the Editorial Board Member	0
The mechanism of active components of Panax japonicus in mediating the HIF-VEGF signaling pathway to promote fracture healing: An investigation utilizing serum pharmacochemistry and network pharmacolo	0
Design, synthesis, and theoretical studies of sulfonylated purine derivatives as EGFR inhibitor	0
Computational Evaluation of Bioactive Compounds from Bryophyllum pinnatum as a Novel GSK3B Inhibitor in Alzheimer's Disease	0
Exploring Phytochemical Compounds: A Computational Study for HIV-1 Reverse Transcriptase Inhibition	0
Spatial omics: Deciphering heterogeneity in the tumor immune microenvironment and resistance to immunotherapy	0
Comparison of the Effects of Different Coating Matrices on Cell Binding and Nitric Oxide-mediated Protein S-nitrosylation in Endothelial Cells under Shear Flow	0
Integrating the summary data-based mendelian randomization and transcriptomic analysis identifies candidate genes and repositioning targets for asthma	0
Proteomic insights into myogenic progression in cultured muscle cells of Lates calcarifer (Bloch, 1790)	0
Resveratrol regulates ferroptosis and endometrial cancer progression by inhibiting CEBPA-mediated FAM83B expression	0