Infection Genetics and Evolution

Article	Citations
Phylodynamics and phylogeography of watermelon mosaic virus: Multiple local invasion routes in southern France and recombination-driven limits to global analysis	83
Two divergent VAR2CSA lineages with distinct evolutionary signatures circulate in Plasmodium falciparum from Thailand	81
Biofilm and planktonic Staphylococcus aureus exhibit distinct gene expression patterns in response to cinnamaldehyde	64
The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa	58
First report of blaVEB-3 and blaKPC-2 coexistence with a novel blaKPC-2 transposon in Klebsiella michiganensis	51
Detection and population genetic analysis of Aedes albopictus (Diptera: Culicidae) based on knockdown resistance (kdr) mutations in the Yangtze River basin of China	50
Lactobacillus spp. derived biosurfactants effect on expression of genes involved in Proteus mirabilis biofilm formation	40
Different virulence of G4 and G5 Eurasian avian-like H1N1 swine influenza viruses in mice	38
A multicenter study on molecular epidemiology of rhinovirus isolated from children with community acquired pneumonia in China during 2017–2019	38
Genetic diversity of tick-borne zoonotic pathogens in ixodid ticks collected from small ruminants in Northern Pakistan	33
Evolutionary analysis of major histocompatibility complex variants in chytrid-resistant and susceptible amphibians	31
Inhibition of EgRad50 leads to impaired DNA repair in Echinococcus granulosus sensu stricto	30
The spatial-temporal pattern of Japanese encephalitis and its influencing factors in Guangxi, China	26
Strategies of rational and structure-driven vaccine design for Arenaviruses	25
Molecular and genotyping techniques in diagnosis of Coxiella burnetii: An overview	23
Serological and molecular detection of Leishmania species in dog peripheral blood from Bobo-Dioulasso city, a confirmation of canine leishmaniasis enzootic area for Burkina Faso	23
Sub-genotypes of hepatitis C virus in the Middle East and North Africa: Patterns of distribution and temporal changes	22
Detection of alphacoronaviruses in Rhinolophus ferrumequinum in Ehime, Japan	22
Decreased expression of HBV surface antigen (HBsAg) with sK122R and sV96A co-mutation is associated with an ineffective antibody response in a chronic hepatitis B patient	21
Three distinct forms of Pneumocystis coexist in individuals of two species of deer mice (genus Peromyscus)	21
An integrated approach for genetic risk profiling of typhoid, tuberculosis, and cholera in local population of tehsil Haripur	21
Vibrio cholerae O1 El Tor strains linked to global cholera show region-specific patterns by pulsed-field gel electrophoresis	20
Drivers of virulence and antimicrobial resistance in Gram-negative bacteria in different settings: A genomic perspective	19
Microevolution of a Mycobacteroides abscessus subsp. bolletii strain in a clinical persistent infection	18
Global genetic diversity of Mycobacterium tuberculosis L2.1 based on pe-ppe gene family	18

Epigenetic mechanisms and host factors impact ACE2 gene expression: Implications in COVID-19 susceptibility	18
Frequent HIV-1 recombination among MSM in Beijing revealed by subtyping and near full-length genome analyses	17
cagA-positive Helicobacter pylori and human NOS2-954G/C polymorphism: A possible association with severe clinical outcomes in Iranian patients	16
Extensive genetic diversity in Plasmodium vivax from Sudan and its genetic relationships with other geographical isolates	16
Genomic and evolutionary characteristics of G3P[8] group a rotavirus strains in China, 2016 to 2018	16
Intestinal microbiota diversity in children from three African countries	15
Corrigendum to: Novel members of the order Picornavirales identified in freshwater from Guarapiranga reservoir in São Paulo (infection, Genetics and Evolution Volume 124, October 2024, 105668)	15
Hepatitis A virus subtype IB outbreak among MSM in Hungary with a link to a frozen berry source	15
Revisiting genetic diversity in Echinococcus multilocularis, the role for EmsB microsatellite: A commentary	15
The E6 gene polymorphism of Human papillomavirus 16 in relation to the risk of cervical cancer in Tunisian women	15
Complete sequencing of the Cryptosporidium suis gp60 gene reveals a novel type of tandem repeats—Implications for surveillance	15
Phylogeography and demographic dynamics of Rhipicephalus microplus from North India	14
Molecular characterization of human bocavirus in recycled water and sewage sludge in Thailand	14
Analysis of viral diversity in dogs with acute gastroenteritis from Brazilian Amazon	14
Genomic evidence of sex chromosome aneuploidy and infection-associated genotypes in the tsetse fly Glossina fuscipes, the major vector of African trypanosomiasis in Uganda	13
Characterization and taxonomic clarification of a non-emetic, radiation-resistant Bacillus cereus strain mrbd isolated from a 60Co irradiator pool	13
IL-17A rs2275913 polymorphism is associated with spinal tuberculosis but not with pulmonary tuberculosis: A study of the Han population in southern China	13
Molecular characterization and genetic diversity of mumps virus genotype G in Pakistan during the 2023 outbreaks	13
Large-scale phylogenetic analysis reveals genetic diversity and geographic distribution of rabies virus in South-East and South Asia	13
Genomic evolution of SARS-CoV-2 in Reunion Island	13
Epidemiological profiles of norovirus genotypes in children with and without acute gastroenteritis from the northwestern Amazon region	13
RNA Polymerase II evolution and adaptations: Insights from Plasmodium and other parasitic protists	13
Identification of human leukocyte antigen in precancerous and cancerous cervical lesions from Ecuadorian women	12
Trends in Salmonella Dublin over time in Denmark from food and animal related isolates	12
Molecular epidemiology of Clostridioides difficile in border areas of Yunnan Province suggests possible transmission routes of the strains	12
Association of human leukocyte antigen class I and class II alleles and haplotypes in COVID-19 infection in a western Indian population	12
Tracking changes in antimicrobial resistance and clone replacement of Neisseria gonorrhoeae in Rio de Janeiro from 2015 to 2022	12
Exploring genetic diversity of hepatitis D virus full-length genome in Brazil: Discovery of a novel HDV-8 subgenotype beyond African borders	12
Deciphering the mobility, pathogenic hosts, and co-selection of antibiotic resistance genes in untreated wastewater from three different hospitals	12
Human parasites as tracers of the evolution of their hosts	12
A fatal case of haemorrhagic fever with renal syndrome in Kursk Region, Russia, caused by a novel Puumala virus clade	12
Interaction analysis of FADS2 gene variants with chronic hepatitis B infection in Chinese patients	12
Modeling and sensitivity analysis of cholera dynamics under fuzzy imprecision	11
Direct detection of canine picornavirus complete coding sequence in wastewater using long-range reverse-transcriptase polymerase chain reaction and long-read sequencing	11
Characteristics of subtype III-A CRISPR-Cas system in Mycobacterium tuberculosis: An overview	11
Molecular detection and phylogenetic analysis of microsporidia in stool specimens isolated from multiple sclerosis patients in the west of Iran	11
Genetic diversity of Echinococcus multilocularis specimens isolated from Belgian patients with alveolar echinococcosis using EmsB microsatellites analysis	11
Chromosomal co-carriage of blaOXA-23 and blaOXA-500 in a carbapenem-resistant Acinetobacter pittii isolate	11
Genetic diversity and molecular diagnosis of Giardia	11
Genetic diversity of Flaviviridae and Rhabdoviridae EVEs in Aedes aegypti and Aedes albopictus on Hainan Island and the Leizhou Peninsula, China	11
Genetic diversity and evolutionary relationships of porcine astroviruses from wild boars and domestic pigs in Japan	11
Genome sequence analysis of a novel rotavirus strain indicates a broad genetic diversity of rotavirus A in shrews	10
Genomic characterization of extended spectrum beta lactamases producing multidrug-resistant Escherichia coli clinically isolated harboring chromosomally mediated CTX-M-15 from Alkharj, KSA	10
Molecular epidemiology of hepatitis B virus (HBV) in Ethiopia: A review article	10
Molecular evolutionary characteristics of OBI virus S gene among the adolescent population in rural and pastoral areas of Xinjiang Province	10
The analysis of complete genome sequence and comparative genomics of Vibrio parahaemolyticus LF1113 in Hainan	10
Genomic transmission clusters and circulating lineages of Mycobacterium tuberculosis among refugees residing in refugee camps in Ethiopia	10
Sequence and phylogenetic analysis of FMD virus isolated from two outbreaks in Egypt	10
Genomic epidemiology of multidrug-resistant clinical Acinetobacter baumannii in Bangladesh	10
Emergence of mcr-4.3 genes in a novel Shewanella specie isolated from the Arctic environment	10

Tracking of SARS-CoV-2 Alpha variant (B.1.1.7) in Palestine	10
Usefulness of environmental DNA for Biomphalaria glabrata and Schistosoma mansoni surveillance and control of low schistosomiasis endemic areas in Brazil	10
Europe-wide distribution and bat-host specific lineages in the malarial parasite Polychromophilus murinus revealed through genetic screening of bat flies	10
Evolution of circulating respiratory syncytial virus lineages before and after the COVID-19 pandemic, 2017–2024, Taiwan	9
Latitude-driven patterns and dynamics in Jingmen group viral lineages: Spatial correlation, recombination, and phylogeography	9
Genomic characterization of a clinical Enterocloster aldenensis strain: First report in Thailand	9
Viral integration and fusion transcript characteristics of possibly high-risk HPV in cervical cancer	9
Novel clades of tick-borne pathogenic nairoviruses in Europe	9
The risk of COVID-19 can be predicted by a nomogram based on m6A-related genes	9
Comparative genomics and characterization of a multidrug-resistant Acinetobacter baumannii VRL-M19 isolated from a crowded setting in India	9
Genetic diversity of Echinococcus multilocularis from red foxes and humans in northern and northeastern Poland investigated using the microsatellite EmsB	9
Transmission chains and molecular characterizations of extended-spectrum β-lactamase producing Enterobacteriaceae at a veterinary hospital in Chengdu, China	9
Simulating epidemic peak dynamics on complex networks using efficient Gillespie algorithms	9
Multifaceted epidemic preparedness against cholera outbreak by One Health approach and genomic surveillance	9
An insight into the characterization of L2 Beijing multi-drug resistant tuberculosis: Description of resistance-associated-variants and discovery of Modern 7 L2 sublineage	9
Assessment of the genetic diversity of lymnaeid (Gastropoda: Pulmonata) snails and their infection status with trematode cercariae in different regions of Thailand	9
Transcriptomic insights into the antimicrobial effect of Pediococcus pentosaceus on multidrug-resistant Pseudomonas aeruginosa	9
Dynamics of Azithromycin Resistance in Pediatric Haemophilus Influenzae Isolates in Wuhan (2015–2024)	9
Differences in Salmonella Typhimurium infection and excretion among laboratory and field strains of the German cockroach suggest a genomic basis for vector competence	9
Dissecting the genome sequence of a clinical isolated Cunninghamella bertholletiae Z2 strain with rich cytochrome P450 enzymes (Article)	9
Molecular insights into artemisinin resistance in Plasmodium falciparum: An updated review	9
Clinical characteristics and phylogenetic analysis of human enteric adenovirus type 41 (HAdV-F41) from children with gastroenteritis during SARS-CoV-2 pandemic	9
CRISPR/Cas advancements for genome editing, diagnosis, therapeutics, and vaccine development for Plasmodium parasites, and genetic engineering of Anopheles mosquito vector	9
Characterisation of Anopheles species composition and genetic diversity in Meghalaya, northeast India, using molecular identification tools	8
Detection and genetic evolution analysis of porcine parvovirus type 7 (PPV7) in Fujian Province	8
Whole genome characterisation of DS-1-like G8P[4] rotavirus A strains circulating in South Africa between 2009 and 2021 reveals endemic sub-lineages and evidence of radical epitope changes	8
Epidemiological and molecular characterization of Coxsackievirus A6 causing hand, foot, and mouth disease in the Philippines, 2012–2017	8
Bats-associated beta-coronavirus detection and characterization: First report from Pakistan	8
Detection of positive selection acting on protein surfaces at the whole-genome scale in the human malaria parasite Plasmodium falciparum	8
Reassessing putative antimicrobial resistance variants in Burkholderia pseudomallei: Commentary on a recent genomic analysis	8
Revisiting adaptive introgression at the HLA genes in Lithuanian genomes with machine learning	8
Emergence of IS26-mediated pLVPK-like virulence and NDM-1 conjugative fusion plasmid in hypervirulent carbapenem-resistant Klebsiella pneumoniae	8
Spatiotemporal dynamics of rabies virus detected in rabid dogs in Cameroon, 2010–2021	8
Genetic variants associated with hantavirus infection in a reservoir host are related to regulation of inflammation and immune surveillance	8
Characteristics of Cervical Cancer Caused by the Human Papillomavirus 18 and Its Genetic Variations in Vietnamese Women	8
Exploring the resistome and virulome in major sequence types of Acinetobacter baumannii genomes: Correlations with genome divergence and sequence types	8
Genetic architecture of tuberculosis susceptibility: A comprehensive research synopsis, meta-analyses, and epidemiological evidence	8
Mitochondrial COI barcoding of Pulicidae fleas and ultrastructural differentiation of the cat flea by scanning electron microscopy	8
Corrigendum to “Epidemiological and phylogenetic characteristics of emerging Anaplasma capra: A systematic review with modeling analysis” [Infection, Genetics and Evolution, volume 115, article 105510	8
Phylogenetic group and virulence profile classification in Escherichia coli from distinct isolation sources in Mexico	8
Whole genome sequencing of uropathogenic E. coli from Ireland reveals diverse resistance mechanisms and strong correlation with phenotypic (EUCAST) susceptibility testing	8
Reassessing the dengue virus type 4 in Brazil: Genomic sequencing and dispersion dynamics, 2011–2017	8
Evolution of SARS-CoV-2 in the Rhine-Neckar/Heidelberg Region 01/2021 – 07/2023	8
Tracing the origin of an imported HIV-1 sub-subtype A6 strain first identified in Zhejiang Province, China	8
Molecular epidemiology of Mycobacterium tuberculosis based on core-genome single nucleotide variant analysis and evaluation of variable-number tandem-repeat typing in Kanagawa, Japan	8
Epidemiological and phylogenetic characteristics of emerging Anaplasma capra: A systematic review with modeling analysis	8
Novel insights on unraveling dynamics of transmission clusters in outbreaks using phylogeny-based methods	8
Characteristics and comparative genome analysis of Yersinia enterocolitica and related species associated with human infections in Switzerland 2019–2023	8
WITHDRAWN: Machine learning predictive model for severe COVID-19	8
MicroRNA sequencing analysis in pediatric patients with influenza-associated acute necrotizing encephalopathy: Potential biomarkers for early diagnosis and therapy	8
Single-nucleotide polymorphisms of artemisinin resistance-related pfubp1 and pfap2mu genes in imported Plasmodium falciparum to Wuhan, China	8
Full genome-based characterization of an Asian G3P[6] human rotavirus strain found in a diarrheic child in Japan: Evidence for porcine-to-human zoonotic transmission	7
Antimicrobial resistance profiling of bacteria isolated from wastewater and samples of pharmaceutical industries in South India	7
Molecular epidemiology and genetic diversity of canine coronavirus from domestic dogs in Chengdu, China from 2020 to 2021 using a multiplex RT-PCR	7
Relationship between vitamin D receptor gene polymorphisms and second acid-fast bacilli smear-positive during treatment for tuberculosis patients	7
Phylogenetic and pathogenic characterization of current fowl adenoviruses in China	7
Positive selection in multiple salivary gland proteins of Anophelinae reveals potential targets for vector control	7
Genetic parameters and single-step genome-wide association analysis for trematode (Fasciola hepatica and Calicophoron/Paramphistomum spp.) infections in German dairy cows	7
Brno loanvirus (BRNV) in bats inhabiting the urban area of Brno, Czech Republic	7
Invasive non-typhoidal Salmonella (iNTS) aminoglycoside-resistant ST313 isolates feature unique pathogenic mechanisms to reach the bloodstream	7
Babesia divergens and Babesia microti species-specific genes that may drive pathogenesis	7
Genetic dynamics of the Duffy antigen receptor for chemokines gene and Plasmodium vivax circulation within sub-Saharan Africa	7
A simple improved method for extracting DNA from ethanol-preserved hard ticks and its applications	7
Population genomics of diarrheagenic Escherichia coli uncovers high connectivity between urban and rural communities in Ecuador	7
Considerable genetic diversity within Paragonimus heterotremus in Luang Prabang, northern Lao People's Democratic Republic	7
Can cloning and sequencing help to genotype positive Toxoplasma gondii clinical samples? Results and validation using SAG3 as a model	7
High HIV-1 genetic diversity and low prevalence of transmitted drug resistance among treatment-naive people living with HIV in Madagascar	7
Editorial - Helminths	7
Genetic diversity and molecular evolution of Plasmodium vivax Duffy Binding Protein and Merozoite Surface Protein-1 in northwestern Thailand	7
Molecular epidemiology of West Nile Virus in raptors, Connecticut, USA, 2022: A case series with whole genome sequencing and phylogenetic analysis	7
Clinico-virological investigation of measles complications in immunocompromised pediatric patients	7
Human genetic factors associated with pneumonia risk, a cue for COVID-19 susceptibility	7
Dengue virus serotype 2 genotype III evolution during the 2019 outbreak in Mato Grosso, Midwestern Brazil	7
Genotypic analysis of hepatitis E virus (HEV) from sporadic symptomatic cases in Pakistan	7
Phylogenomic and population genomic insights into the dissemination of ESBL-producing Escherichia coli causing bloodstream infections in the United Arab Emirates	7
Comments on “Phylodynamic analysis of recent bovine viral diarrhea viruses in the Republic of Korea”	7
Genetic characteristics and diversity of PDC variants of Pseudomonas aeruginosa and its clinical relevance	7
Novel members of the order Picornavirales identified in freshwater from Guarapiranga reservoir in São Paulo	7
Genomic analysis of two rare human G3P[9] rotavirus strains in Ningxia, China	7
The evolutionary and genetic patterns of African swine fever virus	7

Morphometry and genetic diversity pattern of Cysticercus tenuicollis, an important food-borne taeniid metacestode in goats in Bangladesh	7
Whole genome-based antimicrobial resistance and virulence profiling of Staphylococcus aureus isolates from chronic leg ulcer patients in Kilimanjaro, Tanzania	6
Genetic stability of Mpox virus during in-vitro serial passaging: Insights from mutational analysis	6
Metataxomics reveals Blastocystis subtypes mixed infections in Colombian children	6
Genetic susceptibility to severe COVID-19	6
Genomic analysis of blaNDM-1-carrying-Pseudomonas aeruginosa ST2407 in the chromosome from Brazil	6
Emerging genetic diversity of Mycoplasma gallisepticum in Mexican house finches: Evidence of possible independent spillover events	6
Comparative analysis of the antimicrobial resistance and virulence traits in ESBL-producing-Klebsiella pneumoniae ST307 strains colonizing the gastrointestinal tract and causing a fatal bloodstream in	6
Assess transmissibility of different influenza subtypes: Based on a SEIABR model	6
Early plasma cytokines associated with multi-drug resistant ventilator-associated pneumonia after neurosurgery: A retrospective cohort study	6
Molecular characterization and clinical insights into feline chaphamaparvovirus (FeChPV) in cats from Thailand	6
Spatial and temporal diversity of Simulium damnosum s.l. gut microbiota and association with Onchocerca volvulus infection in Cameroon	6
Next-generation sequencing approach to investigate genome variability of Parapoxvirus in Canadian muskoxen (Ovibos moschatus)	6
Genetic diversity and molecular evolution of the internal transcribed spacer regions (ITS1–5.8S–ITS2) of Babesia vogeli	6
Molecular epidemiology and recombination of enterovirus D68 in China	6
Full-length sequence determination and isolation of infectious particles of an atypical porcine pestivirus from wild boars in Ishikawa Prefecture, Japan	6
Molecular characterization and phylogenetic analysis of Newcastle disease viruses isolated in southern Angola, 2016-2018	6
Genome-scale analysis of Mycobacterium avium complex isolates from Portugal reveals extensive genetic diversity	6
Population structure of G. pallidipes tsetse flies in Northwestern Kenya - Towards effective vector control	6
Genomic characteristics and phylogenetic analysis of human adenovirus 14 in China during 2010–2016	6
Engineering a novel immunogenic chimera protein utilizing bacterial infections associated with atherosclerosis to induce a deviation in adaptive immune responses via Immunoinformatics approaches	6
Dynamics of SARS-CoV-2 lineages in French Guiana in 2020–2021: 4 epidemic waves with cross-influences from Europe and South America	6
Genomic surveillance of SARS-CoV-2 variants in Guangzhou, China, from April 2023 to March 2024	6
Genetic markers of Chlamydia pecorum virulence in ruminants support short term host-pathogen evolutionary relationships in the koala, Phascolarctos cinereus	6
Dengue virus population genetics in Yogyakarta, Indonesia prior to city-wide Wolbachia deployment	6
Phyllocoptes parviflori is a distinct species and a vector of the pervasive blackberry leaf mottle associated virus	6
Characterization and genome analysis of G1 sub-cluster mycobacteriophage Lang	6
Genomic and spatial analysis reveal the transmission dynamics of tuberculosis in areas with high incidence of Zhejiang, China: A prospective cohort study	6
Determination and analysis of whole genome sequence of recombinant GII.6[P7] norovirus in Ningxia, China	6
Genome-wide RNA interference of the nhr gene family in barber's pole worm identified members crucial for larval viability in vitro	6
Molecular epidemiology of Pasteurella multocida in cats: First multilocus sequence typing (MLST)-based insights from Iran	6