Infection Genetics and Evolution

Article	Citations
The spatial-temporal pattern of Japanese encephalitis and its influencing factors in Guangxi, China	96
Detection and population genetic analysis of Aedes albopictus (Diptera: Culicidae) based on knockdown resistance (kdr) mutations in the Yangtze River basin of China	84
A multicenter study on molecular epidemiology of rhinovirus isolated from children with community acquired pneumonia in China during 2017–2019	68
Different virulence of G4 and G5 Eurasian avian-like H1N1 swine influenza viruses in mice	62
Serological and molecular detection of Leishmania species in dog peripheral blood from Bobo-Dioulasso city, a confirmation of canine leishmaniasis enzootic area for Burkina Faso	52
Detection of alphacoronaviruses in Rhinolophus ferrumequinum in Ehime, Japan	44
Strategies of rational and structure-driven vaccine design for Arenaviruses	41
The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa	40
Global mapping of Streptococcus pneumoniae sequence types associated with multidrug resistance and capsular switching: A systematic review	38
First report of blaVEB-3 and blaKPC-2 coexistence with a novel blaKPC-2 transposon in Klebsiella michiganensis	35
Biofilm and planktonic Staphylococcus aureus exhibit distinct gene expression patterns in response to cinnamaldehyde	34
Two divergent VAR2CSA lineages with distinct evolutionary signatures circulate in Plasmodium falciparum from Thailand	27
Genetic diversity of tick-borne zoonotic pathogens in ixodid ticks collected from small ruminants in Northern Pakistan	25
Inhibition of EgRad50 leads to impaired DNA repair in Echinococcus granulosus sensu stricto	25
Molecular and genotyping techniques in diagnosis of Coxiella burnetii: An overview	24
Evolutionary analysis of major histocompatibility complex variants in chytrid-resistant and susceptible amphibians	23
Prevalence of Parabacteroides distasonis in Aleppo governorate and its antibiotic susceptibility profile	22
Phylodynamics and phylogeography of watermelon mosaic virus: Multiple local invasion routes in southern France and recombination-driven limits to global analysis	22
Genomic analysis of a clinical Enterobacter hormaechei isolate from a postoperative left atrial myxoma patient	21
Sub-genotypes of hepatitis C virus in the Middle East and North Africa: Patterns of distribution and temporal changes	19
An integrated approach for genetic risk profiling of typhoid, tuberculosis, and cholera in local population of tehsil Haripur	19
Hepatitis A virus subtype IB outbreak among MSM in Hungary with a link to a frozen berry source	19
Intestinal microbiota diversity in children from three African countries	19
Three distinct forms of Pneumocystis coexist in individuals of two species of deer mice (genus Peromyscus)	19
cagA-positive Helicobacter pylori and human NOS2-954G/C polymorphism: A possible association with severe clinical outcomes in Iranian patients	18

Vibrio cholerae O1 El Tor strains linked to global cholera show region-specific patterns by pulsed-field gel electrophoresis	18
Microevolution of a Mycobacteroides abscessus subsp. bolletii strain in a clinical persistent infection	18
Global genetic diversity of Mycobacterium tuberculosis L2.1 based on pe-ppe gene family	17
Extensive genetic diversity in Plasmodium vivax from Sudan and its genetic relationships with other geographical isolates	17
Frequent HIV-1 recombination among MSM in Beijing revealed by subtyping and near full-length genome analyses	17
Epigenetic mechanisms and host factors impact ACE2 gene expression: Implications in COVID-19 susceptibility	17
Re-emergence of a highly pathogenic avian influenza H5N1 virus of clade 2.3.4.4b in poultry in France	17
Drivers of virulence and antimicrobial resistance in Gram-negative bacteria in different settings: A genomic perspective	17
The E6 gene polymorphism of Human papillomavirus 16 in relation to the risk of cervical cancer in Tunisian women	16
Emergence and diversity of monkeypox virus Clade IIb sub-lineages in Nigeria (1971–2023) and its role in the 2022 global outbreak	16
IL-17A rs2275913 polymorphism is associated with spinal tuberculosis but not with pulmonary tuberculosis: A study of the Han population in southern China	15
Decreased expression of HBV surface antigen (HBsAg) with sK122R and sV96A co-mutation is associated with an ineffective antibody response in a chronic hepatitis B patient	15
Molecular characterization and genetic diversity of mumps virus genotype G in Pakistan during the 2023 outbreaks	15
Characterization and taxonomic clarification of a non-emetic, radiation-resistant Bacillus cereus strain mrbd isolated from a 60Co irradiator pool	15
Epidemiological profiles of norovirus genotypes in children with and without acute gastroenteritis from the northwestern Amazon region	15
Large-scale phylogenetic analysis reveals genetic diversity and geographic distribution of rabies virus in South-East and South Asia	14
Revisiting genetic diversity in Echinococcus multilocularis, the role for EmsB microsatellite: A commentary	14
Genomic evidence of sex chromosome aneuploidy and infection-associated genotypes in the tsetse fly Glossina fuscipes, the major vector of African trypanosomiasis in Uganda	14
Deciphering the mobility, pathogenic hosts, and co-selection of antibiotic resistance genes in untreated wastewater from three different hospitals	14
Analysis of viral diversity in dogs with acute gastroenteritis from Brazilian Amazon	14
Complete sequencing of the Cryptosporidium suis gp60 gene reveals a novel type of tandem repeats—Implications for surveillance	14
Trends in Salmonella Dublin over time in Denmark from food and animal related isolates	13
RNA Polymerase II evolution and adaptations: Insights from Plasmodium and other parasitic protists	13
Corrigendum to: Novel members of the order Picornavirales identified in freshwater from Guarapiranga reservoir in São Paulo (infection, Genetics and Evolution Volume 124, October 2024, 105668)	13
Association of human leukocyte antigen class I and class II alleles and haplotypes in COVID-19 infection in a western Indian population	13
Genetic diversity, recombination, and codon-level selection of feline calicivirus ORF2 in Hokkaido (Japan)	13
Phylogeography and demographic dynamics of Rhipicephalus microplus from North India	13
Genomic evolution of SARS-CoV-2 in Reunion Island	13
Modeling and sensitivity analysis of cholera dynamics under fuzzy imprecision	12
Direct detection of canine picornavirus complete coding sequence in wastewater using long-range reverse-transcriptase polymerase chain reaction and long-read sequencing	12
Molecular detection and phylogenetic analysis of microsporidia in stool specimens isolated from multiple sclerosis patients in the west of Iran	12
Identification of human leukocyte antigen in precancerous and cancerous cervical lesions from Ecuadorian women	12
A fatal case of haemorrhagic fever with renal syndrome in Kursk Region, Russia, caused by a novel Puumala virus clade	12
Molecular epidemiology of Clostridioides difficile in border areas of Yunnan Province suggests possible transmission routes of the strains	12
Genetic diversity of Flaviviridae and Rhabdoviridae EVEs in Aedes aegypti and Aedes albopictus on Hainan Island and the Leizhou Peninsula, China	12
Chromosomal co-carriage of blaOXA-23 and blaOXA-500 in a carbapenem-resistant Acinetobacter pittii isolate	11
Usefulness of environmental DNA for Biomphalaria glabrata and Schistosoma mansoni surveillance and control of low schistosomiasis endemic areas in Brazil	11
Genetic diversity and molecular diagnosis of Giardia	11
Simulating epidemic peak dynamics on complex networks using efficient Gillespie algorithms	11
Genetic diversity of Echinococcus multilocularis specimens isolated from Belgian patients with alveolar echinococcosis using EmsB microsatellites analysis	11
Europe-wide distribution and bat-host specific lineages in the malarial parasite Polychromophilus murinus revealed through genetic screening of bat flies	11
Tracking changes in antimicrobial resistance and clone replacement of Neisseria gonorrhoeae in Rio de Janeiro from 2015 to 2022	11
Exploring genetic diversity of hepatitis D virus full-length genome in Brazil: Discovery of a novel HDV-8 subgenotype beyond African borders	11
Characteristics of subtype III-A CRISPR-Cas system in Mycobacterium tuberculosis: An overview	11
Genetic diversity and evolutionary relationships of porcine astroviruses from wild boars and domestic pigs in Japan	11
Molecular epidemiology of hepatitis B virus (HBV) in Ethiopia: A review article	11
Two canine urogenital isolates related to Trueperella bernardiae represent a distinct lineage	11
Genomic diversity and transmission routes of Mycobacterium tuberculosis isolates in Morocco	11
Whole genome characterisation of DS-1-like G8P[4] rotavirus A strains circulating in South Africa between 2009 and 2021 reveals endemic sub-lineages and evidence of radical epitope changes	10
Genomic epidemiology of multidrug-resistant clinical Acinetobacter baumannii in Bangladesh	10

Genomic characterization of extended spectrum beta lactamases producing multidrug-resistant Escherichia coli clinically isolated harboring chromosomally mediated CTX-M-15 from Alkharj, KSA	10
Sequence and phylogenetic analysis of FMD virus isolated from two outbreaks in Egypt	10
Molecular evolutionary characteristics of OBI virus S gene among the adolescent population in rural and pastoral areas of Xinjiang Province	10
Multifaceted epidemic preparedness against cholera outbreak by One Health approach and genomic surveillance	10
Dissecting the genome sequence of a clinical isolated Cunninghamella bertholletiae Z2 strain with rich cytochrome P450 enzymes (Article)	10
Novel insights on unraveling dynamics of transmission clusters in outbreaks using phylogeny-based methods	10
Mitochondrial COI barcoding of Pulicidae fleas and ultrastructural differentiation of the cat flea by scanning electron microscopy	10
Dynamics of Azithromycin Resistance in Pediatric Haemophilus Influenzae Isolates in Wuhan (2015–2024)	10
Evolution of circulating respiratory syncytial virus lineages before and after the COVID-19 pandemic, 2017–2024, Taiwan	10
Genome sequence analysis of a novel rotavirus strain indicates a broad genetic diversity of rotavirus A in shrews	10
Genomic characterization of a clinical Enterocloster aldenensis strain: First report in Thailand	10
Transmission chains and molecular characterizations of extended-spectrum β-lactamase producing Enterobacteriaceae at a veterinary hospital in Chengdu, China	10
Genetic architecture of tuberculosis susceptibility: A comprehensive research synopsis, meta-analyses, and epidemiological evidence	10
An insight into the characterization of L2 Beijing multi-drug resistant tuberculosis: Description of resistance-associated-variants and discovery of Modern 7 L2 sublineage	10
Latitude-driven patterns and dynamics in Jingmen group viral lineages: Spatial correlation, recombination, and phylogeography	10
Emergence of mcr-4.3 genes in a novel Shewanella specie isolated from the Arctic environment	10
Genomic transmission clusters and circulating lineages of Mycobacterium tuberculosis among refugees residing in refugee camps in Ethiopia	10
The analysis of complete genome sequence and comparative genomics of Vibrio parahaemolyticus LF1113 in Hainan	10
Differences in Salmonella Typhimurium infection and excretion among laboratory and field strains of the German cockroach suggest a genomic basis for vector competence	10
Viral integration and fusion transcript characteristics of possibly high-risk HPV in cervical cancer	10
Comparative genomics and characterization of a multidrug-resistant Acinetobacter baumannii VRL-M19 isolated from a crowded setting in India	9
Transcriptomic insights into the antimicrobial effect of Pediococcus pentosaceus on multidrug-resistant Pseudomonas aeruginosa	9
Clinical characteristics and phylogenetic analysis of human enteric adenovirus type 41 (HAdV-F41) from children with gastroenteritis during SARS-CoV-2 pandemic	9
Molecular insights into artemisinin resistance in Plasmodium falciparum: An updated review	9
MicroRNA sequencing analysis in pediatric patients with influenza-associated acute necrotizing encephalopathy: Potential biomarkers for early diagnosis and therapy	9
Genetic diversity of Echinococcus multilocularis from red foxes and humans in northern and northeastern Poland investigated using the microsatellite EmsB	9
Discovery of similar multidrug resistance regions in nosocomial Enterobacteriaceae outbreaks in three hospitals in the Netherlands	9
The risk of COVID-19 can be predicted by a nomogram based on m6A-related genes	9
CRISPR/Cas advancements for genome editing, diagnosis, therapeutics, and vaccine development for Plasmodium parasites, and genetic engineering of Anopheles mosquito vector	9
Epidemiological and phylogenetic characteristics of emerging Anaplasma capra: A systematic review with modeling analysis	9
Novel clades of tick-borne pathogenic nairoviruses in Europe	9
Exploring the resistome and virulome in major sequence types of Acinetobacter baumannii genomes: Correlations with genome divergence and sequence types	9
Assessment of the genetic diversity of lymnaeid (Gastropoda: Pulmonata) snails and their infection status with trematode cercariae in different regions of Thailand	9
Epidemiological and molecular characterization of Coxsackievirus A6 causing hand, foot, and mouth disease in the Philippines, 2012–2017	9
Corrigendum to “Epidemiological and phylogenetic characteristics of emerging Anaplasma capra: A systematic review with modeling analysis” [Infection, Genetics and Evolution, volume 115, article 105510	9
Characteristics and comparative genome analysis of Yersinia enterocolitica and related species associated with human infections in Switzerland 2019–2023	8
Phylogenetic group and virulence profile classification in Escherichia coli from distinct isolation sources in Mexico	8
Reassessing the dengue virus type 4 in Brazil: Genomic sequencing and dispersion dynamics, 2011–2017	8
Tracing the origin of an imported HIV-1 sub-subtype A6 strain first identified in Zhejiang Province, China	8
Detection and genetic evolution analysis of porcine parvovirus type 7 (PPV7) in Fujian Province	8
Evaluation of the effects of ivermectin and Moringa oleifera nanoparticles on muscular trichinellosis in a murine model	8
Emergence of IS26-mediated pLVPK-like virulence and NDM-1 conjugative fusion plasmid in hypervirulent carbapenem-resistant Klebsiella pneumoniae	8
Genomic variation and recombination dynamics of duck hepatitis A virus type 3 (DHAV-3) in clinical isolates from Shandong and Anhui, China	8
Detection of positive selection acting on protein surfaces at the whole-genome scale in the human malaria parasite Plasmodium falciparum	8
Molecular epidemiology of Mycobacterium tuberculosis based on core-genome single nucleotide variant analysis and evaluation of variable-number tandem-repeat typing in Kanagawa, Japan	8
Bats-associated beta-coronavirus detection and characterization: First report from Pakistan	8
Revisiting adaptive introgression at the HLA genes in Lithuanian genomes with machine learning	8
Whole genome sequencing of uropathogenic E. coli from Ireland reveals diverse resistance mechanisms and strong correlation with phenotypic (EUCAST) susceptibility testing	8
Relationship between vitamin D receptor gene polymorphisms and second acid-fast bacilli smear-positive during treatment for tuberculosis patients	8
Characterisation of Anopheles species composition and genetic diversity in Meghalaya, northeast India, using molecular identification tools	8
Early-life acquisition of antimicrobial resistance genes and strain-level genomic concordance across maternal-infant compartments	8
Evolution of SARS-CoV-2 in the Rhine-Neckar/Heidelberg Region 01/2021 – 07/2023	8
Characteristics of Cervical Cancer Caused by the Human Papillomavirus 18 and Its Genetic Variations in Vietnamese Women	8
Genetic variants associated with hantavirus infection in a reservoir host are related to regulation of inflammation and immune surveillance	8
Spatiotemporal dynamics of rabies virus detected in rabid dogs in Cameroon, 2010–2021	8
Surveillance of gastrointestinal viruses of free-ranging and rehabilitated Sea turtles in the United States	8
Invasive non-typhoidal Salmonella (iNTS) aminoglycoside-resistant ST313 isolates feature unique pathogenic mechanisms to reach the bloodstream	7
Genetic stability of Mpox virus during in-vitro serial passaging: Insights from mutational analysis	7
Full genome-based characterization of an Asian G3P[6] human rotavirus strain found in a diarrheic child in Japan: Evidence for porcine-to-human zoonotic transmission	7
Clinico-virological investigation of measles complications in immunocompromised pediatric patients	7
Phyllocoptes parviflori is a distinct species and a vector of the pervasive blackberry leaf mottle associated virus	7
Molecular epidemiology and genetic diversity of canine coronavirus from domestic dogs in Chengdu, China from 2020 to 2021 using a multiplex RT-PCR	7
Genotypic analysis of hepatitis E virus (HEV) from sporadic symptomatic cases in Pakistan	7
Brno loanvirus (BRNV) in bats inhabiting the urban area of Brno, Czech Republic	7
Phylogenetic and pathogenic characterization of current fowl adenoviruses in China	7
Phylogenomic and population genomic insights into the dissemination of ESBL-producing Escherichia coli causing bloodstream infections in the United Arab Emirates	7
Reassessing putative antimicrobial resistance variants in Burkholderia pseudomallei: Commentary on a recent genomic analysis	7
Genetic dynamics of the Duffy antigen receptor for chemokines gene and Plasmodium vivax circulation within sub-Saharan Africa	7
A simple improved method for extracting DNA from ethanol-preserved hard ticks and its applications	7
Population structure of G. pallidipes tsetse flies in Northwestern Kenya - Towards effective vector control	7
Human genetic factors associated with pneumonia risk, a cue for COVID-19 susceptibility	7
Babesia divergens and Babesia microti species-specific genes that may drive pathogenesis	7
The evolutionary and genetic patterns of African swine fever virus	7
Full-length sequence determination and isolation of infectious particles of an atypical porcine pestivirus from wild boars in Ishikawa Prefecture, Japan	7
Considerable genetic diversity within Paragonimus heterotremus in Luang Prabang, northern Lao People's Democratic Republic	7
Genetic parameters and single-step genome-wide association analysis for trematode (Fasciola hepatica and Calicophoron/Paramphistomum spp.) infections in German dairy cows	7
Genetic diversity and molecular evolution of Plasmodium vivax Duffy Binding Protein and Merozoite Surface Protein-1 in northwestern Thailand	7
Antimicrobial resistance profiling of bacteria isolated from wastewater and samples of pharmaceutical industries in South India	7
Population genomics of diarrheagenic Escherichia coli uncovers high connectivity between urban and rural communities in Ecuador	7
Spatial and temporal diversity of Simulium damnosum s.l. gut microbiota and association with Onchocerca volvulus infection in Cameroon	7

Morphometry and genetic diversity pattern of Cysticercus tenuicollis, an important food-borne taeniid metacestode in goats in Bangladesh	7
Molecular characterization and phylogenetic analysis of Newcastle disease viruses isolated in southern Angola, 2016-2018	7
Dengue virus serotype 2 genotype III evolution during the 2019 outbreak in Mato Grosso, Midwestern Brazil	7
Molecular epidemiology of West Nile Virus in raptors, Connecticut, USA, 2022: A case series with whole genome sequencing and phylogenetic analysis	7
Novel members of the order Picornavirales identified in freshwater from Guarapiranga reservoir in São Paulo	7
Genomic analysis of two rare human G3P[9] rotavirus strains in Ningxia, China	7
Viral metagenomic analysis of CRESS-DNA viruses in six wild herbivorous mammal species from the Qinghai-Tibet plateau	7
Comments on “Phylodynamic analysis of recent bovine viral diarrhea viruses in the Republic of Korea”	7
High HIV-1 genetic diversity and low prevalence of transmitted drug resistance among treatment-naive people living with HIV in Madagascar	7
Genetic characteristics and diversity of PDC variants of Pseudomonas aeruginosa and its clinical relevance	7