OOIR: Observatory of International Research

Papers

(The TQCC of Cytometry Part A is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Integration, exploration, and analysis of high‐dimensional single‐cell cytometry data using Spectre	95
Little to no expression of angiotensin‐converting enzyme‐2 on most human peripheral blood immune cells but highly expressed on tissue macrophages	84
Monocyte HLA‐DR Measurement by Flow Cytometry in COVID‐19 Patients: An Interim Review	63
Current trends in flow cytometry automated data analysis software	56
Development of a 43 color panel for the characterization of conventional and unconventional T‐cell subsets, B cells, NK cells, monocytes, dendritic cells, and innate lymphoid cells using sp	45
Application‐based guidelines for best practices in plant flow cytometry	42
The evolution of spectral flow cytometry	37
Reference standards for flow cytometric estimation of absolute nuclear DNA content in plants	35
Comprehensive Phenotyping of Human Dendritic Cells and Monocytes	31
CD169 and CD64 could help differentiate bacterial from CoVID‐19 or other viral infections in the Emergency Department	29
PeacoQC: Peak‐based selection of high quality cytometry data	29
A streamlined whole blood CyTOF workflow defines a circulating immune cell signature of COVID‐19	27
Deep learning based digital cell profiles for risk stratification of urine cytology images	26
Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data	24
OMIP‐079: Cell cycle of CD4⁺ and CD8⁺ naïve/memory T cell subsets, and of Treg cells from mouse spleen	24
Full spectrum flow cytometry and mass cytometry: A 32‐marker panel comparison	24
MIRIAM: A machine and deep learning single‐cell segmentation and quantification pipeline for multi‐dimensional tissue images	23
Comprehensive phenotyping of human peripheral blood B lymphocytes in healthy conditions	22
OMIP 071: A 31‐Parameter Flow Cytometry Panel for In‐Depth Immunophenotyping of Human T‐Cell Subsets Using Surface Markers	22
Chromosome analysis and sorting	20
Isolation of plant nuclei for estimation of nuclear DNA content: Overview and best practices	20
Fluorescence activated cell sorting—A selective tool for plant cell isolation and analysis	19
Computational flow cytometry as a diagnostic tool in suspected‐myelodysplastic syndromes	19
MIFlowCyt‐EV: The Next Chapter in the Reporting and Reliability of Single Extracellular Vesicle Flow Cytometry Experiments	17
Deep learning‐enabled imaging flow cytometry for high‐speedCryptosporidium and Giardia detection	17

Sheath fluid impacts the depletion of cellular metabolites in cells afflicted by sorting induced cellular stress (SICS)	17
Unlocking autofluorescence in the era of full spectrum analysis: Implications for immunophenotype discovery projects	17
Best practices in plant cytometry	17
AttentionMask R‐CNNwith edge refinement algorithm for identifying circulating genetically abnormal cells	16
Monocyte CD169 expression in COVID‐19 patients upon intensive care unit admission	15
Flow cytometric analysis of pollen and spores: An overview of applications and methodology	15
Identification of fetal liver stroma in spectral cytometry using the parameter autofluorescence	15
In Situ Classification of Cell Types in Human Kidney Tissue Using 3D Nuclear Staining	14
flowCut: An R package for automated removal of outlier events and flagging of files based on time versus fluorescence analysis	14
A comparison of spectral unmixing to conventional compensation for the calculation of fluorochrome abundances from flow cytometric data	13
Assessment of chilling injury in hypothermic stored boar spermatozoa by multicolor flow cytometry	13
The Coulter Principle: A history	13
A Deep Learning Pipeline for Nucleus Segmentation	13
A microfluidic cytometer for white blood cell analysis	13
OMIP 083: A 21‐marker 18‐color flow cytometry panel for in‐depth phenotyping of human peripheral monocytes	12
Single cell multiomic analysis of T cell exhaustion in vitro	12
A Paradigm Shift in Nuclear Chromatin Interpretation: From Qualitative Intuitive Recognition to Quantitative Texture Analysis of Breast Cancer Cell Nuclei	12
Platelet mass cytometry: Optimization of sample, reagent, and analysis parameters	12
OMIP 078: A 31‐parameter panel for comprehensive immunophenotyping of multiple immune cells in human peripheral blood mononuclear cells	11
Best practices in the flow cytometry of microalgae	11
A human receptor occupancy assay to measure anti‐PD‐1 binding in patients with prior anti‐PD‐1	11
	11
Sheathless microflow cytometer utilizing two bulk standing acoustic waves	11
Comprehensive Phenotyping of Peripheral Blood T Lymphocytes in Healthy Mice	11
Ab initio spillover compensation in mass cytometry data	11
OMIP 075: A 22‐color panel for the measurement of antigen‐specific T‐cell responses in human and nonhuman primates	10
Erythrocyte lysis and angle‐resolved light scattering measured by scanning flow cytometry result to 48 indices quantifying a gas exchange function of the human organism	10
Monitoring anti‐CD19 chimeric antigen receptor T cell population by flow cytometry and its consistency with digital droplet polymerase chain reaction	10
Spatial analysis for highly multiplexed imaging data to identify tissue microenvironments	10
OMIP‐084: 28‐color full spectrum flow cytometry panel for the comprehensive analysis of human γδ T cells	10
CD56, HLA‐DR, and CD45 recognize a subtype of childhood AML harboring CBFA2T3‐GLIS2 fusion transcript	10
Comprehensive phenotyping of endothelial cells using flow cytometry 2: Human	10
Plant material selection, collection, preservation, and storage for nuclear DNA content estimation	10
Mesenchymal stem cell‐glioblastoma interactions mediated via kinin receptors unveiled by cytometry	9
Morphology analysis of unlabeled red blood cells based on quantitative differential phase contrast microscopy	9
OMIP‐080: 29‐Color flow cytometry panel for comprehensive evaluation of NK and T cells reconstitution after hematopoietic stem cells transplantation	9
Identification of critical hemodilution by artificial intelligence in bone marrow assessed for minimal residual disease analysis in acute myeloid leukemia: The Cinderella method	9
Single cell capture, isolation, and long‐term in‐situ imaging using quantitative self‐interference spectroscopy	9
Detecting Förster resonance energy transfer in living cells by conventional and spectral flow cytometry	9
Sustained cellular immunity in adults recovered from mild COVID‐19	9
Full spectrum cytometry improves the resolution of highly autofluorescent biological samples: Identification of myeloid cells in regenerating skeletal muscles	9
Impact of age and gender on lymphocyte subset counts in patients with COVID‐19	9
Machine learning for cell classification and neighborhood analysis in glioma tissue	9
Light scattering pattern specific convolutional network static cytometry for label‐free classification of cervical cells	9
Intelligent image‐activated sorting of Chlamydomonas reinhardtii by mitochondrial localization	8
OMIP‐93: A 41‐color high parameter panel to characterize various co‐inhibitory molecules and their ligands in the lymphoid and myeloid compartment in mice	8
Comprehensive phenotyping of endothelial cells using flow cytometry 1: Murine	8
OMIP 076: High‐dimensional immunophenotyping of murine T‐cell, B‐cell, and antibody secreting cell subsets	8
DebarcodeR increases fluorescent cell barcoding capacity and accuracy	8
High‐content video flow cytometry with digital cell filtering for label‐free cell classification by machine learning	8

Inherent bioelectrical parameters of hundreds of thousands of single leukocytes based on impedance flow cytometry	8
TITAN: An end‐to‐end data analysis environment for the Hyperion™ imaging system	8
OMIP‐095: 40‐Color spectral flow cytometry delineates all major leukocyte populations in murine lymphoid tissues	8
High‐Throughput Image Cytometry Detection Method for CAR‐T Transduction, Cell Proliferation, and Cytotoxicity Assays	8
Alternative methods of viability determination in single cell mass cytometry	8
Analytical performance of a 25‐marker spectral cytometry immune monitoring assay in peripheral blood	8
Sperm‐cell DNA fragmentation prediction using label‐free quantitative phase imaging and deep learning	8
Comprehensive phenotyping of human platelets by single‐cell cytometry	8
Recent progress in plasmonic nanoparticle‐based biomarker detection and cytometry for the study of central nervous system disorders	7
Long‐term effects of Pfizer‐BioNTech COVID‐19 vaccinations on platelets	7
Advance of microfluidic constriction channel system of measuring single‐cell cortical tension/specific capacitance of membrane and conductivity of cytoplasm	7
Transformation of multicolour flow cytometry data with OTflow prevents misleading multivariate analysis results and incorrect immunological conclusions	7
Kinetics of activation marker expression after in vitro polyclonal stimulation of chicken peripheralT cells	7
In situ imaging for tumor microbiome interactions via imaging mass cytometry on single‐cell level	7
	7
Optical section structured illumination‐based Förster resonance energy transfer imaging	7
Sheathless acoustic based flow cell sorter for enrichment of rare cells	7
Comprehensive phenotyping of peripheral blood monocytes in healthy bovine	7
Supervised machine learning in microfluidic impedance flow cytometry for improved particle size determination	7
OMIP‐086: Full spectrum flow cytometry for high‐dimensional immunophenotyping of mouse innate lymphoid cells	7
Comprehensive Phenotyping of Dendritic Cells in Cancer Patients by Flow Cytometry	7
Classification of peripheral blood neutrophils using deep learning	7
Standardized high‐dimensional spectral cytometry protocol and panels for whole blood immune phenotyping in clinical and translational studies	6
Quantitative analysis of endotoxin‐induced inflammation in human lung cells by Chipcytometry	6
Real‐time monitoring of single circulating tumor cells with a fluorescently labeled deoxy‐glucose by in vivo flow cytometry	6
Innovative fluorescent probes for in vivo visualization of biomolecules in living Caenorhabditis elegans	6
Quantification of Light Scattering Detection Efficiency and Background in Flow Cytometry	6
Development of a 27‐color panel for the detection of measurable residual disease in patients diagnosed with acute myeloid leukemia	6
Identification of rare cell populations in autofluorescence lifetime image data	6
Reliable identification and quantification of neural cells in microscopic images of neurospheres	6
Simultaneous analysis of antigen‐specific B and T cells after SARS‐CoV‐2 infection and vaccination	6
Evaluating the Cytometric Detection and Enumeration of the Wine Bacterium, Oenococcus oeni	6
The use of flow cytometry for fungal nuclear DNA quantification	6
Novel PE and APC tandems: Additional near‐infrared fluorochromes for use in spectral flow cytometry	6
Mass‐tag barcoding for multiplexed analysis of human synaptosomes and other anuclear events	6
Upconversion nanoparticle‐assisted single‐molecule assay for detecting circulating antigens of aggressive prostate cancer	6
Biosafety during a pandemic: shared resource laboratories rise to the challenge	6
Classification of tumor subtypes leveraging constriction‐channel based impedance flow cytometry and optical imaging	6
Toward five‐part differential of leukocytes based on electrical impedances of single cells and neural network	6
Label‐free classification of dead and live colonic adenocarcinoma cells based on 2D light scattering and deep learning analysis	6
Phenotypic analysis of erythrocytes in sickle cell disease using imaging flow cytometry	5
Rapid, label‐free antibiotic susceptibility determined directly from positive blood culture	5
	5
Rac1/pSTAT3 expression: A pharmacodynamic marker panel as a first step toward optimization of thiopurine therapy in inflammatory bowel disease patients	5
OMIP‐090: A 20‐parameter flow cytometry panel for rapid analysis of cell diversity and homing capacity in human conventional and regulatory T cells	5
Practical application of microsphere samples for benchmarking a quantitative phase imaging system	5
The potential of multispectral imaging flow cytometry for environmental monitoring	5
Addressing HIV‐1 latency with Flow‐FISH: Finding, characterizing and targeting HIV‐1 infected cells	5
OMIP‐088: Twenty‐target imaging mass cytometry panel for major cell populations in mouse formalin fixed paraffin embedded liver	5
Barcoding of live peripheral blood mononuclear cells to assess immune cell phenotypes using full spectrum flow cytometry	5
Comprehensive phenotyping of human peripheral blood B lymphocytes in pathological conditions	5
Simple Field Storage of Fish Samples for Measurement of DNA Content by Flow Cytometry	5
A rapid method for the assessment of the vitality of microorganisms using flow cytometry	5
Inherent single‐cell bioelectrical parameters of thousands of neutrophils, eosinophils and basophils derived from impedance flow cytometry	5
Development of a novel flow cytometry method for detecting pneumococcal‐specific B cells	5
OMIP 072: A 15‐color panel for immunophenotypic identification, quantification, and characterization of leukemic stem cells in children with acute myeloid leukemia	5
COVID‐19: Using high‐throughput flow cytometry to dissect clinical heterogeneity	5
Quantifying colocalization: The case for discarding the Manders overlap coefficient	5
Fast whole‐body motor neuron calcium imaging of freely moving Caenorhabditis elegans without coverslip pressed	5
Measuring calibration factors by imaging a dish of cells expressing different tandem constructs plasmids	5
Stabilization of Human Whole Blood Samples for Multicenter and Retrospective Immunophenotyping Studies	5
Imaging flow cytometry and fluorescence microscopy in assessing radiation response in lymphocytes from umbilical cord blood and cancer patients	5
Gating Harmonization Guidelines for Intracellular Cytokine Staining Validated in Second International Multiconsortia Proficiency Panel Conducted by Cancer Immunotherapy Consortium (CIC/	5
In vitro aging of stallion spermatozoa during prolonged storage at 5°C	5
An efficient and cost‐effective method for the purification of human basophils	5
Cells infected with human papilloma pseudovirus display nuclear reorganization and heterogenous infection kinetics	4
OMIP‐91: A 27‐color flow cytometry panel to evaluate the phenotype and function of human conventional and unconventional T‐cells	4
iCoreDrop: A robust immune monitoring spectral cytometry assay with six open channels for biomarker flexibility	4
Development of flow cytometry‐based assays to assess the ability of antibodies to bind to SARS‐CoV‐2‐infected and spike‐transfected cells and mediate NK cell degranulation	4
Cell damage evaluation by intelligent imaging flow cytometry	4
Merging and imputation of flow cytometry data: A critical assessment	4
A comprehensive assessment of four whole blood stabilizers for flow‐cytometric analysis of leukocyte populations	4
Enhanced segmentation of label‐free cells for automated migration and interaction tracking	4
OMIP 073: Analysis of human thymocyte development with a 14‐color flow cytometry panel	4
Investigating differences between tamoxifen resistant and sensitive breast cancer cells with flow cytometry	4
Automated fluorescence gating and size determination reduce variation in measured concentration of extracellular vesicles by flow cytometry	4
Shared Resource Laboratory Operations: Changes Made During Initial Global COVID‐19 Lockdown of 2020	4
Adaptive optics for structured illumination microscopy based on deep learning	4
OMIP 082: A 25‐color phenotyping to define human innate lymphoid cells, natural killer cells, mucosal‐associated invariant T cells, and γδ T cells from freshly isolated human intestinal tis	4
Immunophenotypical profiling of myeloid neoplasms with erythroid predominance using mass cytometry (CyTOF)	4

Phenotypic analysis of the pediatric immune response to SARS‐CoV‐2 by flow cytometry	4
Improved efficiency of urine cell image segmentation using droplet microfluidics technology	4
Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels	4
Novel phenotypical and functional sub‐classification of liver macrophages highlights changes in population dynamics in experimental mouse models	4
In‐depth immunophenotyping reveals significant alteration of lymphocytes in buffalo with brucellosis	4
Further comments on the role of ACE‐2 positive macrophages in human lung	4
Extensive flow cytometric immunophenotyping of human PBMC incorporating detection of chemokine receptors, cytokines and tetramers	4
A new open‐source hardware device to measure vertical sperm motility and concentration	4
Translocation of chromatin proteins to nucleoli—The influence of protein dynamics on post‐fixation localization	4
Dual DNA staining enables isolation of multiple sub‐types of post‐replicative mouse male germ cells	4
Recent progress in cytometric technologies and their applications in ecotoxicology and environmental risk assessment	4
Enhanced resolution of marine viruses with violet side scatter	4
Quantum approach for nanoparticle fluorescence by sub‐ns photon detection	4
Expanding the use of flow cytometry in semen analysis: The rise of flow spermetry	4
Discovering fiber type architecture over the entire muscle using data‐driven analysis	4
Proliferative and anti‐apoptotic fractions in maturing hematopoietic cell lineages and their role in homeostasis of normal bone marrow	3
Comparison of electrostatic and mechanical cell sorting with limited starting material	3
Microraft arrays for serial‐killer CD19 chimeric antigen receptor T cells and single cell isolation	3
Relationship between lymphocyte subsets values andC‐reactiveprotein inCOVID‐19 patients	3
Taking molecular pathology to the next level: Whole slide multicolor confocal imaging with the Pannoramic Confocal digital pathology scanner	3
	3
Improved estimation of the ratio of detection efficiencies of excited acceptors and donors for FRET measurements	3
Label‐free multiphoton imaging flow cytometry	3
OMIP‐096: A 24‐color flow cytometry panel to identify and characterize CD4+ and CD8+ tissue‐resident T cells in human skin, intestinal, and type II mucosal tissue	3
Orchestrating multiplexity in polychromatic science through OMIPs: A decade‐old resource to empower biomedical research	3
Impact of enzymatic digestion on single cell suspension yield from peripheral human lung tissue	3
Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory	3
OMIP‐94: Twenty‐four‐color (thirty‐marker) panel for deep immunophenotyping of immune cells in human peripheral blood	3
Pluripotent stem cells: Basic biology or else differentiations aimed at translational research and the role of flow cytometry	3
After cyclophosphamide exposure, granulosa cells recover their anti‐müllerian hormone‐producing ability but not their numbers	3
Quantitative flow cytometry leveraging droplet‐based constriction microchannels with high reliability and high sensitivity	3
Deep SED‐Net with interactive learning for multiple testicular cell types segmentation and cell composition analysis in mouse seminiferous tubules	3
Fluorescent energy transfer causing misleading signal in multicolor flow cytometry	3
Analysis insights for three FRET pairs of chemically unlinked two‐molecule FRET cytometry	3
Detecting cells rotations for increasing the robustness of cell sizing by impedance measurements, with or without machine learning	3
Establishing a biosafety plan for a flow cytometry shared resource laboratory	3
OMIP‐102: 50‐color phenotyping of the human immune system with in‐depth assessment of T cells and dendritic cells	3
Quantitative single‐cell optical technologies	3
Differentiating single cervical cells by mitochondrial fluorescence imaging and deep learning‐based label‐free light scattering with multi‐modal static cytometry	3
Bibliometric news and more about signal transduction and disease	3
Acly promotes metabolic reprogramming and induction of IRF4 during early CD8⁺ T cell activation	3
A simplified method for separating renal MPCs using SLAMF9	3
Howard M. Shapiro: Remembering Cytometry's Muse	3
How well can your flow cytometer detect photons?	3
Risk awareness during operation of analytical flow cytometers and implications throughout the COVID‐19 pandemic	3
CPHEN‐15: Comprehensive phenotyping of human peripheral blood helper‐ILCs by flow cytometry	3
Validation of multiparametric panels for bovine mesenchymal stromal cell phenotyping	3
Behold Cytometrists: One Block Is Not Enough! Cyanine‐Tandems Bind Non‐Specifically to Human Monocytes	3
Sub‐micro scale cell segmentation using deep learning	3
Diffractive Beam Shaper for Multiwavelength Lasers for Flow Cytometry	3
	3
Considerations for user consultation in a flow cytometry shared resource laboratory	3
Flow cytometric measurement of STAT5 phosphorylation in cytomegalovirus‐stimulated T cells	3