Cytometry Part A

Article	Citations
OMIP‐069: Forty‐Color Full Spectrum Flow Cytometry Panel for Deep Immunophenotyping of Major Cell Subsets in Human Peripheral Blood	188
Lymphocyte Subset Counts in COVID‐19 Patients: A Meta‐Analysis	175
Dengue Fever, COVID‐19 (SARS‐CoV‐2), and Antibody‐Dependent Enhancement (ADE): A Perspective	84
Little to no expression of angiotensin‐converting enzyme‐2 on most human peripheral blood immune cells but highly expressed on tissue macrophages	80
Integration, exploration, and analysis of high‐dimensional single‐cell cytometry data using Spectre	78
Decrease of Non‐Classical and Intermediate Monocyte Subsets in Severe Acute SARS‐CoV‐2 Infection	75
Monocyte HLA‐DR Measurement by Flow Cytometry in COVID‐19 Patients: An Interim Review	59
Evaluation of Exosome Proteins by on‐Bead Flow Cytometry	50
Current trends in flow cytometry automated data analysis software	50
Evaluating spectral cytometry for immune profiling in viral disease	50
Real‐Time Stain‐Free Classification of Cancer Cells and Blood Cells Using Interferometric Phase Microscopy and Machine Learning	46
Development of a 43 color panel for the characterization of conventional and unconventional T‐cell subsets, B cells, NK cells, monocytes, dendritic cells, and innate lymphoid cells using sp	42
Fluorescence and Light Scatter Calibration Allow Comparisons of Small Particle Data in Standard Units across Different Flow Cytometry Platforms and Detector Settings	39
Application‐based guidelines for best practices in plant flow cytometry	33
Refractive Index Changes of Cells and Cellular Compartments Upon Paraformaldehyde Fixation Acquired by Tomographic Phase Microscopy	33
Hematologist‐Level Classification of Mature B‐Cell Neoplasm Using Deep Learning on Multiparameter Flow Cytometry Data	32
Reference standards for flow cytometric estimation of absolute nuclear DNA content in plants	31
High‐Resolution Imaging Flow Cytometry Reveals Impact of Incubation Temperature on Labeling of Extracellular Vesicles with Antibodies	31
The evolution of spectral flow cytometry	28
High‐Dimensional Data Analysis Algorithms Yield Comparable Results for Mass Cytometry and Spectral Flow Cytometry Data	28
OMIP‐063: 28‐Color Flow Cytometry Panel for Broad Human Immunophenotyping	26
Handling and Processing of Blood Specimens from Patients with COVID‐19 for Safe Studies on Cell Phenotype and Cytokine Storm	26
Evaluation of Caspase‐3 Activity During Apoptosis with Fluorescence Lifetime‐Based Cytometry Measurements and Phasor Analyses	25
The Challenge of Distinguishing Cell–Cell Complexes from Singlet Cells in Non‐Imaging Flow Cytometry and Single‐Cell Sorting	25
Comprehensive Phenotyping of Human Dendritic Cells and Monocytes	25

A streamlined whole blood CyTOF workflow defines a circulating immune cell signature of COVID‐19	24
CD169 and CD64 could help differentiate bacterial from CoVID‐19 or other viral infections in the Emergency Department	24
PeacoQC: Peak‐based selection of high quality cytometry data	23
MIRIAM: A machine and deep learning single‐cell segmentation and quantification pipeline for multi‐dimensional tissue images	21
Deep learning based digital cell profiles for risk stratification of urine cytology images	21
Isolation of plant nuclei for estimation of nuclear DNA content: Overview and best practices	19
Full spectrum flow cytometry and mass cytometry: A 32‐marker panel comparison	19
OMIP 071: A 31‐Parameter Flow Cytometry Panel for In‐Depth Immunophenotyping of Human T‐Cell Subsets Using Surface Markers	19
Chromosome analysis and sorting	18
Improved Flow Cytometric Light Scatter Detection of Submicron‐Sized Particles by Reduction of Optical Background Signals	18
Comprehensive phenotyping of human peripheral blood B lymphocytes in healthy conditions	17
MIFlowCyt‐EV: The Next Chapter in the Reporting and Reliability of Single Extracellular Vesicle Flow Cytometry Experiments	17
A Cancer Biologist's Primer on Machine Learning Applications in High‐Dimensional Cytometry	17
Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data	17
Computational flow cytometry as a diagnostic tool in suspected‐myelodysplastic syndromes	16
OMIP‐079: Cell cycle of CD4+ and CD8+ naïve/memory T cell subsets, and of Treg cells from mouse spleen	16
Best practices in plant cytometry	15
Deep learning‐enabled imaging flow cytometry for high‐speedCryptosporidium and Giardia detection	14
Fluorescence activated cell sorting—A selective tool for plant cell isolation and analysis	14
Flow cytometric analysis of pollen and spores: An overview of applications and methodology	14
In Situ Classification of Cell Types in Human Kidney Tissue Using 3D Nuclear Staining	13
Sheath fluid impacts the depletion of cellular metabolites in cells afflicted by sorting induced cellular stress (SICS)	13
Image‐Based Cell Profiling Enables Quantitative Tissue Microscopy in Gastroenterology	13
Flow Cytometric Monitoring of Dynamic Cytosolic Calcium, Sodium, and Potassium Fluxes Following Platelet Activation	12
A microfluidic cytometer for white blood cell analysis	12
OMIP‐064: A 27‐Color Flow Cytometry Panel to Detect and Characterize Human NK Cells and Other Innate Lymphoid Cell Subsets, MAIT Cells, and γδ T Cells	12
Unlocking autofluorescence in the era of full spectrum analysis: Implications for immunophenotype discovery projects	12
The Coulter Principle: A history	12
A Deep Learning Pipeline for Nucleus Segmentation	12
Recent Developments in the Application of Flow Cytometry to Advance our Understanding of Mycobacteriumtuberculosis Physiology and Pathogenesis	12
OMIP‐068: High‐Dimensional Characterization of Global and Antigen‐Specific B Cells in Chronic Infection	12
Imaging Flow Cytometry for Phylogenetic and MorphologicallyBased Functional Group Clustering of a Natural Phytoplankton Community over 1 Year in an Urban Pond	12
Morphology, Motility, and Cytoskeletal Architecture of Breast Cancer Cells Depend on Keratin 19 and Substrate	11
OMIP 083: A 21‐marker 18‐color flow cytometry panel for in‐depth phenotyping of human peripheral monocytes	11
Platelet mass cytometry: Optimization of sample, reagent, and analysis parameters	11
Characterization of Chicken Leukocyte Subsets from Lymphatic Tissue by Flow Cytometry	11
Phenotypic Analysis of the Mouse Hematopoietic Hierarchy Using Spectral Cytometry: From Stem Cell Subsets to Early Progenitor Compartments	11
Monocyte CD169 expression in COVID‐19 patients upon intensive care unit admission	11
Identification of fetal liver stroma in spectral cytometry using the parameter autofluorescence	11
Assessment of chilling injury in hypothermic stored boar spermatozoa by multicolor flow cytometry	11
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Sheathless microflow cytometer utilizing two bulk standing acoustic waves	10
OMIP‐067: 28‐Color Flow Cytometry Panel to Evaluate Human T‐Cell Phenotype and Function	10
OMIP 078: A 31‐parameter panel for comprehensive immunophenotyping of multiple immune cells in human peripheral blood mononuclear cells	10
A comparison of spectral unmixing to conventional compensation for the calculation of fluorochrome abundances from flow cytometric data	10
Imaging Flow Cytometry Analysis of CEACAM Binding to Opa‐Expressing Neisseria gonorrhoeae	10
Plant material selection, collection, preservation, and storage for nuclear DNA content estimation	10
Best practices in the flow cytometry of microalgae	10
flowCut: An R package for automated removal of outlier events and flagging of files based on time versus fluorescence analysis	10
Simplified Instrument Calibration for Wide‐Field Fluorescence Resonance Energy Transfer (FRET) Measured by the Sensitized Emission Method	10

Acoustophoresis Enables the Label‐Free Separation of Functionally Different Subsets of Cultured Bone Marrow Stromal Cells	10
Ab initio spillover compensation in mass cytometry data	9
A human receptor occupancy assay to measure anti‐PD‐1 binding in patients with prior anti‐PD‐1	9
Single cell multiomic analysis of T cell exhaustion in vitro	9
Coregistered Spectral Optical Coherence Tomography and Two‐Photon Microscopy for Multimodal Near‐Instantaneous Deep‐Tissue Imaging	9
Monitoring anti‐CD19 chimeric antigen receptor T cell population by flow cytometry and its consistency with digital droplet polymerase chain reaction	9
CD56, HLA‐DR, and CD45 recognize a subtype of childhood AML harboring CBFA2T3‐GLIS2 fusion transcript	9
A Paradigm Shift in Nuclear Chromatin Interpretation: From Qualitative Intuitive Recognition to Quantitative Texture Analysis of Breast Cancer Cell Nuclei	9
Multiparameter Flow Cytometry Assay for Analysis of Nitrosative Stress Status in Human Spermatozoa	9
Insights in Chloroquine Action: Perspectives and Implications in Malaria and COVID‐19	9
Improvements in Flow Cytometry‐Based Cytotoxicity Assay	9
Sustained cellular immunity in adults recovered from mild COVID‐19	9
High‐Throughput Image Cytometry Detection Method for CAR‐T Transduction, Cell Proliferation, and Cytotoxicity Assays	8
OMIP 075: A 22‐color panel for the measurement of antigen‐specific T‐cell responses in human and nonhuman primates	8
Analytical performance of a 25‐marker spectral cytometry immune monitoring assay in peripheral blood	8
Comprehensive Phenotyping of Peripheral Blood T Lymphocytes in Healthy Mice	8
OMIP‐065: Dog Immunophenotyping and T‐Cell Activity Evaluation with a 14‐Color Panel	8
Single cell capture, isolation, and long‐term in‐situ imaging using quantitative self‐interference spectroscopy	8
TITAN: An end‐to‐end data analysis environment for the Hyperion™ imaging system	8
Coupling Microscopy and Flow Cytometry for a Comprehensive Characterization of Nanoparticle Production in Insect Cells	8
Identification of critical hemodilution by artificial intelligence in bone marrow assessed for minimal residual disease analysis in acute myeloid leukemia: The Cinderella method	8
DebarcodeR increases fluorescent cell barcoding capacity and accuracy	8
Impact of age and gender on lymphocyte subset counts in patients with COVID‐19	8
Data File Standard for Flow Cytometry, Version FCS 3.2	8
Machine learning for cell classification and neighborhood analysis in glioma tissue	8
Erythrocyte lysis and angle‐resolved light scattering measured by scanning flow cytometry result to 48 indices quantifying a gas exchange function of the human organism	8
Sheathless acoustic based flow cell sorter for enrichment of rare cells	7
OMIP‐066: Identification of Novel Subpopulations of Human Group 2 Innate Lymphoid Cells in Peripheral Blood	7
OMIP‐084: 28‐color full spectrum flow cytometry panel for the comprehensive analysis of human γδ T cells	7
Full spectrum cytometry improves the resolution of highly autofluorescent biological samples: Identification of myeloid cells in regenerating skeletal muscles	7
Recent progress in plasmonic nanoparticle‐based biomarker detection and cytometry for the study of central nervous system disorders	7
Status and Potential of Single‐Cell Transcriptomics for Understanding Plant Development and Functional Biology	7
Attention Mask R‐CNN with edge refinement algorithm for identifying circulating genetically abnormal cells	7
Comprehensive phenotyping of endothelial cells using flow cytometry 2: Human	7
Comprehensive phenotyping of peripheral blood monocytes in healthy bovine	7
A Joint Action in Times of Pandemic: The German BioImaging Recommendations for Operating Imaging Core Facilities During the SARS‐Cov‐2 Emergency	7
Alternative methods of viability determination in single cell mass cytometry	7
Inherent bioelectrical parameters of hundreds of thousands of single leukocytes based on impedance flow cytometry	7
Detecting Förster resonance energy transfer in living cells by conventional and spectral flow cytometry	7
Light scattering pattern specific convolutional network static cytometry for label‐free classification of cervical cells	7
Comprehensive phenotyping of human platelets by single‐cell cytometry	7
Supervised machine learning in microfluidic impedance flow cytometry for improved particle size determination	7
Optical section structured illumination‐based Förster resonance energy transfer imaging	7
Development of a 27‐color panel for the detection of measurable residual disease in patients diagnosed with acute myeloid leukemia	6
Long‐term effects of Pfizer‐BioNTech COVID‐19 vaccinations on platelets	6
Morphology analysis of unlabeled red blood cells based on quantitative differential phase contrast microscopy	6
Procedures for Flow Cytometry‐Based Sorting of Unfixed Severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐CoV‐2) Infected Cells and Other Infectious Agents	6
OMIP‐080: 29‐Color flow cytometry panel for comprehensive evaluation of NK and T cells reconstitution after hematopoietic stem cells transplantation	6
How to Prevent yourself from Seeing Double	6
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High‐content video flow cytometry with digital cell filtering for label‐free cell classification by machine learning	6
Mesenchymal stem cell‐glioblastoma interactions mediated via kinin receptors unveiled by cytometry	6
Spatial analysis for highly multiplexed imaging data to identify tissue microenvironments	6
Mass‐tag barcoding for multiplexed analysis of human synaptosomes and other anuclear events	6
Simultaneous analysis of antigen‐specific B and T cells after SARS‐CoV‐2 infection and vaccination	6
Kinetics of activation marker expression after in vitro polyclonal stimulation of chicken peripheral T cells	6
Toward five‐part differential of leukocytes based on electrical impedances of single cells and neural network	6
Novel PE and APC tandems: Additional near‐infrared fluorochromes for use in spectral flow cytometry	6
Comprehensive Phenotyping of Dendritic Cells in Cancer Patients by Flow Cytometry	6
Advance of microfluidic constriction channel system of measuring single‐cell cortical tension/specific capacitance of membrane and conductivity of cytoplasm	6
Transformation of multicolour flow cytometry data with OTflow prevents misleading multivariate analysis results and incorrect immunological conclusions	6
Evaluating the Cytometric Detection and Enumeration of the Wine Bacterium, Oenococcus oeni	6
Classification of tumor subtypes leveraging constriction‐channel based impedance flow cytometry and optical imaging	5
Addressing HIV‐1 latency with Flow‐FISH: Finding, characterizing and targeting HIV‐1 infected cells	5
Sperm‐cell DNA fragmentation prediction using label‐free quantitative phase imaging and deep learning	5
Measuring calibration factors by imaging a dish of cells expressing different tandem constructs plasmids	5
Aiming to Compare Apples to Apples: Analysis of Extracellular Vesicles and Other Nanosized Particles by Flow Cytometry	5
Practical application of microsphere samples for benchmarking a quantitative phase imaging system	5
An efficient and cost‐effective method for the purification of human basophils	5
Celebrating 10 Years of OMIPs	5
Quantification of Light Scattering Detection Efficiency and Background in Flow Cytometry	5
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Reliable identification and quantification of neural cells in microscopic images of neurospheres	5
Inherent single‐cell bioelectrical parameters of thousands of neutrophils, eosinophils and basophils derived from impedance flow cytometry	5
Innovative fluorescent probes for in vivo visualization of biomolecules in living Caenorhabditis elegans	5
Biosafety during a pandemic: shared resource laboratories rise to the challenge	5
Using Cytometry for Investigation of Purinergic Signaling in Tumor‐Associated Macrophages	5
Intelligent image‐activated sorting of Chlamydomonas reinhardtii by mitochondrial localization	5
Identification of rare cell populations in autofluorescence lifetime image data	5
Comprehensive phenotyping of endothelial cells using flow cytometry 1: Murine	5

Real‐time monitoring of single circulating tumor cells with a fluorescently labeled deoxy‐glucose by in vivo flow cytometry	5
On Its Way to Primetime: Artificial Intelligence in Flow Cytometry Diagnostics	4
Rac1/pSTAT3 expression: A pharmacodynamic marker panel as a first step toward optimization of thiopurine therapy in inflammatory bowel disease patients	4
The use of flow cytometry for fungal nuclear DNA quantification	4
Simple Field Storage of Fish Samples for Measurement of DNA Content by Flow Cytometry	4
Cells infected with human papilloma pseudovirus display nuclear reorganization and heterogenous infection kinetics	4
Imaging flow cytometry and fluorescence microscopy in assessing radiation response in lymphocytes from umbilical cord blood and cancer patients	4
Upconversion nanoparticle‐assisted single‐molecule assay for detecting circulating antigens of aggressive prostate cancer	4
OMIP‐086: Full spectrum flow cytometry for high‐dimensional immunophenotyping of mouse innate lymphoid cells	4
In‐depth immunophenotyping reveals significant alteration of lymphocytes in buffalo with brucellosis	4
Fast whole‐body motor neuron calcium imaging of freely moving Caenorhabditis elegans without coverslip pressed	4
OMIP 073: Analysis of human thymocyte development with a 14‐color flow cytometry panel	4
Further comments on the role of ACE‐2 positive macrophages in human lung	4
Rapid, label‐free antibiotic susceptibility determined directly from positive blood culture	4
Lymph Liquid Biopsy for Detection of Cancer Stem Cells	4
Quantum approach for nanoparticle fluorescence by sub‐ns photon detection	4
Shared Resource Laboratory Operations: Changes Made During Initial Global COVID‐19 Lockdown of 2020	4
Quantitative Imaging of B1 Cyclin Expression Across the Cell Cycle Using Green Fluorescent Protein Tagging and Epifluorescence	4
40 Years of My Venture with CYTOMETRY	4
OMIP‐070: NKp46‐Based 27‐Color Phenotyping to Define Natural Killer Cells Isolated From Human Tumor Tissues	4
Gating Harmonization Guidelines for Intracellular Cytokine Staining Validated in Second International Multiconsortia Proficiency Panel Conducted by Cancer Immunotherapy Consortium (CIC/	4
Dual DNA staining enables isolation of multiple sub‐types of post‐replicative mouse male germ cells	4
Discovering fiber type architecture over the entire muscle using data‐driven analysis	4
Comprehensive phenotyping of human peripheral blood B lymphocytes in pathological conditions	4
Expanding the use of flow cytometry in semen analysis: The rise of flow spermetry	4
In situ imaging for tumor microbiome interactions via imaging mass cytometry on single‐cell level	4
OMIP‐93: A 41‐color high parameter panel to characterize various co‐inhibitory molecules and their ligands in the lymphoid and myeloid compartment in mice	4
I Am the Alpha and the …Gamma, and the G. Calibration of Intensity‐Based FRET Measurements	4
Is there a Pot of Gold at the End of the Spectrum?	4
OMIP 076: High‐dimensional immunophenotyping of murine T‐cell, B‐cell, and antibody secreting cell subsets	4
Enhanced segmentation of label‐free cells for automated migration and interaction tracking	4
In Vivo Flow Cytometric Evaluation of Circulating Metastatic Pancreatic Tumor Cells after High‐Intensity Focused Ultrasound Therapy	4
Immunophenotypical profiling of myeloid neoplasms with erythroid predominance using mass cytometry (CyTOF)	4
The potential of multispectral imaging flow cytometry for environmental monitoring	4
Quantifying colocalization: The case for discarding the Manders overlap coefficient	4
Quantitative analysis of endotoxin‐induced inflammation in human lung cells by Chipcytometry	4
Translocation of chromatin proteins to nucleoli—The influence of protein dynamics on post‐fixation localization	4
Seeing the Confetti Colors in a New Light Utilizing Flow Cytometry and Imaging Flow Cytometry	4
Fluorescent energy transfer causing misleading signal in multicolor flow cytometry	3
OMIP 082: A 25‐color phenotyping to define human innate lymphoid cells, natural killer cells, mucosal‐associated invariant T cells, and γδ T cells from freshly isolated human intestinal tis	3
Development of flow cytometry‐based assays to assess the ability of antibodies to bind to SARS‐CoV‐2‐infected and spike‐transfected cells and mediate NK cell degranulation	3
A new open‐source hardware device to measure vertical sperm motility and concentration	3
Orchestrating multiplexity in polychromatic science through OMIPs: A decade‐old resource to empower biomedical research	3
Quantitative single‐cell optical technologies	3
Classification of peripheral blood neutrophils using deep learning	3
Quantitative flow cytometry leveraging droplet‐based constriction microchannels with high reliability and high sensitivity	3
Bibliometric news and more about signal transduction and disease	3
Investigating differences between tamoxifen resistant and sensitive breast cancer cells with flow cytometry	3
Risk awareness during operation of analytical flow cytometers and implications throughout the COVID‐19 pandemic	3
Deep SED‐Net with interactive learning for multiple testicular cell types segmentation and cell composition analysis in mouse seminiferous tubules	3
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Barcoding of live peripheral blood mononuclear cells to assess immune cell phenotypes using full spectrum flow cytometry	3
Detecting cells rotations for increasing the robustness of cell sizing by impedance measurements, with or without machine learning	3
Recent progress in cytometric technologies and their applications in ecotoxicology and environmental risk assessment	3
Diffractive Beam Shaper for Multiwavelength Lasers for Flow Cytometry	3
Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels	3
ISAC Probe Tag Dictionary: Standardized Nomenclature for Detection and Visualization Labels Used in Cytometry and Microscopy Imaging	3
Development of a novel flow cytometry method for detecting pneumococcal‐specific B cells	3
Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory	3
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Taking molecular pathology to the next level: Whole slide multicolor confocal imaging with the Pannoramic Confocal digital pathology scanner	3
Phenotypic analysis of erythrocytes in sickle cell disease using imaging flow cytometry	3
Automated fluorescence gating and size determination reduce variation in measured concentration of extracellular vesicles by flow cytometry	3
Behold Cytometrists: One Block Is Not Enough! Cyanine‐Tandems Bind Non‐Specifically to Human Monocytes	3
Label‐free classification of dead and live colonic adenocarcinoma cells based on 2D light scattering and deep learning analysis	3
Stabilization of Human Whole Blood Samples for Multicenter and Retrospective Immunophenotyping Studies	3
OMIP‐090: A 20‐parameter flow cytometry panel for rapid analysis of cell diversity and homing capacity in human conventional and regulatory T cells	3
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OMIP 072: A 15‐color panel for immunophenotypic identification, quantification, and characterization of leukemic stem cells in children with acute myeloid leukemia	3
Flow cytometric measurement of STAT5 phosphorylation in cytomegalovirus‐stimulated T cells	3
In vitro aging of stallion spermatozoa during prolonged storage at 5°C	3
Comparison of electrostatic and mechanical cell sorting with limited starting material	3
COVID‐19: Using high‐throughput flow cytometry to dissect clinical heterogeneity	3