Journal of Chemical Theory and Computation

Papers
(The median citation count of Journal of Chemical Theory and Computation is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS976
OPLS4: Improving Force Field Accuracy on Challenging Regimes of Chemical Space797
Robust and Efficient Implicit Solvation Model for Fast Semiempirical Methods248
Nudged Elastic Band Method for Molecular Reactions Using Energy-Weighted Springs Combined with Eigenvector Following167
Accelerating AutoDock4 with GPUs and Gradient-Based Local Search156
Simulation of FUS Protein Condensates with an Adapted Coarse-Grained Model143
Lipid21: Complex Lipid Membrane Simulations with AMBER127
TorchMD: A Deep Learning Framework for Molecular Simulations125
Bottom-up Coarse-Graining: Principles and Perspectives114
Efficient Exploration of Chemical Space with Docking and Deep Learning114
Benchmarking TD-DFT and Wave Function Methods for Oscillator Strengths and Excited-State Dipole Moments99
Machine Learning in QM/MM Molecular Dynamics Simulations of Condensed-Phase Systems91
Revisiting the Performance of Time-Dependent Density Functional Theory for Electronic Excitations: Assessment of 43 Popular and Recently Developed Functionals from Rungs One to Four90
PyLipID: A Python Package for Analysis of Protein–Lipid Interactions from Molecular Dynamics Simulations90
The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry87
Development and Benchmarking of Open Force Field v1.0.0—the Parsley Small-Molecule Force Field86
Assessing Density Functional Theory for Chemically Relevant Open-Shell Transition Metal Reactions85
Improving Martini 3 for Disordered and Multidomain Proteins84
CRYSTAL23: A Program for Computational Solid State Physics and Chemistry82
CHARMM-GUI Nanomaterial Modeler for Modeling and Simulation of Nanomaterial Systems77
CHARMM-GUI Polymer Builder for Modeling and Simulation of Synthetic Polymers76
Fast and Accurate Machine Learning Strategy for Calculating Partial Atomic Charges in Metal–Organic Frameworks75
Time-Dependent Long-Range-Corrected Double-Hybrid Density Functionals with Spin-Component and Spin-Opposite Scaling: A Comprehensive Analysis of Singlet–Singlet and Singlet–Triplet Excitation Energies71
Reference Energies for Intramolecular Charge-Transfer Excitations70
Reliable and Accurate Solution to the Induced Fit Docking Problem for Protein–Ligand Binding68
CG2AT2: an Enhanced Fragment-Based Approach for Serial Multi-scale Molecular Dynamics Simulations67
Single-Point Hessian Calculations for Improved Vibrational Frequencies and Rigid-Rotor-Harmonic-Oscillator Thermodynamics67
Machine-Learning-Assisted Free Energy Simulation of Solution-Phase and Enzyme Reactions67
TURBOMOLE: Today and Tomorrow67
Structure, Dynamics, Receptor Binding, and Antibody Binding of the Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein in a Viral Membrane66
Linear Atomic Cluster Expansion Force Fields for Organic Molecules: Beyond RMSE65
Consistent Force Field Captures Homologue-Resolved HP1 Phase Separation64
Extension of the CL&Pol Polarizable Force Field to Electrolytes, Protic Ionic Liquids, and Deep Eutectic Solvents63
Cubic-Scaling All-Electron GW Calculations with a Separable Density-Fitting Space–Time Approach61
LiPyphilic: A Python Toolkit for the Analysis of Lipid Membrane Simulations60
Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking60
Perspective on the Current State-of-the-Art of Quantum Computing for Drug Discovery Applications58
Additive CHARMM36 Force Field for Nonstandard Amino Acids58
Automated Molecular Cluster Growing for Explicit Solvation by Efficient Force Field and Tight Binding Methods57
Modeling of Multiresonant Thermally Activated Delayed Fluorescence Emitters─Properly Accounting for Electron Correlation Is Key!57
Low-Order Scaling G0W0 by Pair Atomic Density Fitting56
Accurate Biomolecular Structures by the Nano-LEGO Approach: Pick the Bricks and Build Your Geometry55
Accurate and Compatible Force Fields for Molecular Oxygen, Nitrogen, and Hydrogen to Simulate Gases, Electrolytes, and Heterogeneous Interfaces54
Scalable Constant pH Molecular Dynamics in GROMACS54
Development of Range-Corrected Deep Learning Potentials for Fast, Accurate Quantum Mechanical/Molecular Mechanical Simulations of Chemical Reactions in Solution53
Benchmarking Magnetizabilities with Recent Density Functionals53
CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Phosphatidylethanolamine, Phosphatidylglycerol, and Ether Lipids53
Coarse-Grained Force Fields from the Perspective of Statistical Mechanics: Better Understanding of the Origins of a MARTINI Hangover53
Quantum Embedding Theory for Strongly Correlated States in Materials52
Charge-Transfer Excitations within Density Functional Theory: How Accurate Are the Most Recommended Approaches?51
Epik: pKa and Protonation State Prediction through Machine Learning50
Automated, Accurate, and Scalable Relative Protein–Ligand Binding Free-Energy Calculations Using Lambda Dynamics49
Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling48
Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields Using GPUs and Multi-GPU Systems48
Do Double-Hybrid Exchange–Correlation Functionals Provide Accurate Chemical Shifts? A Benchmark Assessment for Proton NMR47
Assessing the Accuracy of Local Hybrid Density Functional Approximations for Molecular Response Properties47
DeePKS: A Comprehensive Data-Driven Approach toward Chemically Accurate Density Functional Theory47
Differential Interactions between Human ACE2 and Spike RBD of SARS-CoV-2 Variants of Concern47
CHAL336 Benchmark Set: How Well Do Quantum-Chemical Methods Describe Chalcogen-Bonding Interactions?47
What Types of Chemical Problems Benefit from Density-Corrected DFT? A Probe Using an Extensive and Chemically Diverse Test Suite47
Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based Scanning Reveals the Allosteric Duality46
Predicting Density Functional Theory-Quality Nuclear Magnetic Resonance Chemical Shifts via Δ-Machine Learning46
Chasing Collective Variables Using Autoencoders and Biased Trajectories45
Assessing the Performances of CASPT2 and NEVPT2 for Vertical Excitation Energies45
Recent Advances for Improving the Accuracy, Transferability, and Efficiency of Reactive Force Fields45
Non-Covalent Interactions Atlas Benchmark Data Sets 3: Repulsive Contacts45
Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion45
Evaluating the Efficiency of the Martini Force Field to Study Protein Dimerization in Aqueous and Membrane Environments44
Accurate Reduced-Cost CCSD(T) Energies: Parallel Implementation, Benchmarks, and Large-Scale Applications43
Extended Benchmark Set of Main-Group Nuclear Shielding Constants and NMR Chemical Shifts and Its Use to Evaluate Modern DFT Methods43
IsRNA1: De Novo Prediction and Blind Screening of RNA 3D Structures43
XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions43
Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties42
Development and Benchmarking of Open Force Field 2.0.0: The Sage Small Molecule Force Field42
A Simple Range-Separated Double-Hybrid Density Functional Theory for Excited States42
Searching Configurations in Uncertainty Space: Active Learning of High-Dimensional Neural Network Reactive Potentials41
Low-Scaling GW with Benchmark Accuracy and Application to Phosphorene Nanosheets41
Newton-X Platform: New Software Developments for Surface Hopping and Nuclear Ensembles41
Simple Protocol for Capturing Both Linear-Response and State-Specific Effects in Excited-State Calculations with Continuum Solvation Models41
Phase Equilibrium of Water with Hexagonal and Cubic Ice Using the SCAN Functional41
All-Electron Gaussian-Based G0W0 for Valence and Core Excitation Energies of Periodic Systems40
Development and Validation of a Parameter-Free Model Chemistry for the Computation of Reliable Reaction Rates40
Excited States from State-Specific Orbital-Optimized Pair Coupled Cluster40
Cluster-in-Molecule Local Correlation Method with an Accurate Distant Pair Correction for Large Systems39
Concept of Orbital Entanglement and Correlation in Quantum Chemistry39
Unitary Transformation of the Electronic Hamiltonian with an Exact Quadratic Truncation of the Baker-Campbell-Hausdorff Expansion39
Density-Corrected DFT Explained: Questions and Answers39
What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models39
Accelerating Cryptic Pocket Discovery Using AlphaFold39
Martini 3 Coarse-Grained Force Field for Carbohydrates39
Mixed-Reference Spin-Flip Time-Dependent Density Functional Theory (MRSF-TDDFT) as a Simple yet Accurate Method for Diradicals and Diradicaloids39
Choosing Bad versus Worse: Predictions of Two-Photon-Absorption Strengths Based on Popular Density Functional Approximations38
UUCG RNA Tetraloop as a Formidable Force-Field Challenge for MD Simulations37
New and Efficient Implementation of CC337
Δ-Machine Learned Potential Energy Surfaces and Force Fields37
WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications37
Time-Lagged Independent Component Analysis of Random Walks and Protein Dynamics37
Mountaineering Strategy to Excited States: Highly Accurate Oscillator Strengths and Dipole Moments of Small Molecules37
Automated Coarse-Grained Mapping Algorithm for the Martini Force Field and Benchmarks for Membrane–Water Partitioning36
Z-DNA as a Touchstone for Additive Empirical Force Fields and a Refinement of the Alpha/Gamma DNA Torsions for AMBER36
Polarizable Water Potential Derived from a Model Electron Density36
DP Compress: A Model Compression Scheme for Generating Efficient Deep Potential Models36
Benchmark of GW Methods for Core-Level Binding Energies36
GLOW: A Workflow Integrating Gaussian-Accelerated Molecular Dynamics and Deep Learning for Free Energy Profiling36
GPU-Accelerated All-Atom Particle-Mesh Ewald Continuous Constant pH Molecular Dynamics in Amber35
junChS and junChS-F12 Models: Parameter-free Efficient yet Accurate Composite Schemes for Energies and Structures of Noncovalent Complexes35
Chemoton 2.0: Autonomous Exploration of Chemical Reaction Networks35
Chemical Space Exploration with Active Learning and Alchemical Free Energies35
Influence of Electronic Structure Modeling and Junction Structure on First-Principles Chiral Induced Spin Selectivity35
Mechanisms of Nucleation and Solid–Solid-Phase Transitions in Triblock Janus Assemblies35
AlphaFold2-RAVE: From Sequence to Boltzmann Ranking35
Velocity Adjustment in Surface Hopping: Ethylene as a Case Study of the Maximum Error Caused by Direction Choice35
Protein–Protein Interaction-Gaussian Accelerated Molecular Dynamics (PPI-GaMD): Characterization of Protein Binding Thermodynamics and Kinetics34
BH9, a New Comprehensive Benchmark Data Set for Barrier Heights and Reaction Energies: Assessment of Density Functional Approximations and Basis Set Incompleteness Potentials34
Understanding Conformational Entropy in Small Molecules34
The MOBH35 Metal–Organic Barrier Heights Reconsidered: Performance of Local-Orbital Coupled Cluster Approaches in Different Static Correlation Regimes34
Small Matrix Path Integral with Extended Memory33
Anharmonic Correction to Adsorption Free Energy from DFT-Based MD Using Thermodynamic Integration33
Nonadiabatic Dynamics Algorithms with Only Potential Energies and Gradients: Curvature-Driven Coherent Switching with Decay of Mixing and Curvature-Driven Trajectory Surface Hopping33
Kinetics from Metadynamics: Principles, Applications, and Outlook32
Analyzing Dynamical Disorder for Charge Transport in Organic Semiconductors via Machine Learning32
Scalable Electron Correlation Methods. 8. Explicitly Correlated Open-Shell Coupled-Cluster with Pair Natural Orbitals PNO-RCCSD(T)-F12 and PNO-UCCSD(T)-F1232
Study of the Decoherence Correction Derived from the Exact Factorization Approach for Nonadiabatic Dynamics32
Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension32
Spin-Pure Stochastic-CASSCF via GUGA-FCIQMC Applied to Iron–Sulfur Clusters32
Discovering Collective Variables of Molecular Transitions via Genetic Algorithms and Neural Networks32
Efficient Amino Acid Conformer Search with Bayesian Optimization32
Learning Electron Densities in the Condensed Phase31
Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity31
Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field31
Reconciling Local Coupled Cluster with Multireference Approaches for Transition Metal Spin-State Energetics31
Parametrization of Trivalent and Tetravalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models31
Optimizing Molecular Geometries in Strong Magnetic Fields31
Relativistic EOM-CCSD for Core-Excited and Core-Ionized State Energies Based on the Four-Component Dirac–Coulomb(−Gaunt) Hamiltonian31
Highly Efficient Resolution-of-Identity Density Functional Theory Calculations on Central and Graphics Processing Units31
On the Use of Interaction Entropy and Related Methods to Estimate Binding Entropies31
Machine Learning and Enhanced Sampling Simulations for Computing the Potential of Mean Force and Standard Binding Free Energy30
QM/MM Nonadiabatic Dynamics: the SHARC/COBRAMM Approach30
Evaluating Classical Force Fields against Experimental Cross-Solvation Free Energies30
Density Functional Geometries and Zero-Point Energies in Ab Initio Thermochemical Treatments of Compounds with First-Row Atoms (H, C, N, O, F)30
Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck30
General Many-Body Framework for Data-Driven Potentials with Arbitrary Quantum Mechanical Accuracy: Water as a Case Study30
Orbital Optimization in Selected Configuration Interaction Methods30
Polarization Effects in Water-Mediated Selective Cation Transport across a Narrow Transmembrane Channel30
Further Development of iCIPT2 for Strongly Correlated Electrons29
All-Electron BSE@GW Method for K-Edge Core Electron Excitation Energies29
Beyond Tripeptides Two-Step Active Machine Learning for Very Large Data sets29
Multitask Machine Learning of Collective Variables for Enhanced Sampling of Rare Events29
NMR Indirect Spin–Spin Coupling Constants in a Modern Quasi-Relativistic Density Functional Framework29
Faster Self-Consistent Field (SCF) Calculations on GPU Clusters29
Efficient Four-Component Dirac–Coulomb–Gaunt Hartree–Fock in the Pauli Spinor Representation29
Fitting Side-Chain NMR Relaxation Data Using Molecular Simulations28
Systematic Evaluation of Counterpoise Correction in Density Functional Theory28
Comparison of Carbohydrate Force Fields in Molecular Dynamics Simulations of Protein–Carbohydrate Complexes28
Rare Event Kinetics from Adaptive Bias Enhanced Sampling28
Density Matrix Renormalization Group with Dynamical Correlation via Adiabatic Connection28
Performance of Markov State Models and Transition Networks on Characterizing Amyloid Aggregation Pathways from MD Data28
Effect of the Current Dependence of Tau-Dependent Exchange-Correlation Functionals on Nuclear Shielding Calculations28
Effects of All-Atom Molecular Mechanics Force Fields on Amyloid Peptide Assembly: The Case of PHF6 Peptide of Tau Protein27
High-Performance, Graphics Processing Unit-Accelerated Fock Build Algorithm27
BLaDE: A Basic Lambda Dynamics Engine for GPU-Accelerated Molecular Dynamics Free Energy Calculations27
Atomic Cluster Expansion for Quantum-Accurate Large-Scale Simulations of Carbon27
DL_FFLUX: A Parallel, Quantum Chemical Topology Force Field27
Third-Order Møller–Plesset Theory Made More Useful? The Role of Density Functional Theory Orbitals27
Q-Force: Quantum Mechanically Augmented Molecular Force Fields27
Vibronic Spectra of π-Conjugated Systems with a Multitude of Coupled States: A Protocol Based on Linear Vibronic Coupling Models and Quantum Dynamics Tested on Hexahelicene27
Unified Framework for Photophysical Rate Calculations in TADF Molecules27
PyAutoFEP: An Automated Free Energy Perturbation Workflow for GROMACS Integrating Enhanced Sampling Methods27
GW100: A Slater-Type Orbital Perspective27
Addressing the Excessive Aggregation of Membrane Proteins in the MARTINI Model27
Modeling Ultrafast Electron Dynamics in Strong Magnetic Fields Using Real-Time Time-Dependent Electronic Structure Methods27
SGOOP-d: Estimating Kinetic Distances and Reaction Coordinate Dimensionality for Rare Event Systems from Biased/Unbiased Simulations26
Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications26
A Massively Parallel Implementation of the CCSD(T) Method Using the Resolution-of-the-Identity Approximation and a Hybrid Distributed/Shared Memory Parallelization Model26
Improved Spin-State Energy Differences of Fe(II) Molecular and Crystalline Complexes via the Hubbard U-Corrected Density26
Toward Orbital-Free Density Functional Theory with Small Data Sets and Deep Learning26
Spin-Scaled Range-Separated Double-Hybrid Density Functional Theory for Excited States26
Regularized CASPT2: an Intruder-State-Free Approach26
Protein Structure Prediction from NMR Hydrogen–Deuterium Exchange Data26
A Ranked-Orbital Approach to Select Active Spaces for High-Throughput Multireference Computation26
Nonadiabatic Dynamics in Si and CdSe Nanoclusters: Many-Body vs Single-Particle Treatment of Excited States26
Quantum ESPRESSO: One Further Step toward the Exascale26
Enhancing Sampling of Water Rehydration on Ligand Binding: A Comparison of Techniques26
Artificial Intelligence Enhanced Molecular Simulations26
Size-and-Shape Space Gaussian Mixture Models for Structural Clustering of Molecular Dynamics Trajectories25
Green’s Function Formulation of Quantum Defect Embedding Theory25
Tumuc1: A New Accurate DNA Force Field Consistent with High-Level Quantum Chemistry25
How Good Is the Density-Corrected SCAN Functional for Neutral and Ionic Aqueous Systems, and What Is So Right about the Hartree–Fock Density?25
Quantum-Inspired Algorithm for the Factorized Form of Unitary Coupled Cluster Theory25
MB-pol(2023): Sub-chemical Accuracy for Water Simulations from the Gas to the Liquid Phase25
Position-Dependent Diffusion Constant of Molecules in Heterogeneous Systems as Evaluated by the Local Mean Squared Displacement25
Accelerators for Classical Molecular Dynamics Simulations of Biomolecules25
Native or Non-Native Protein–Protein Docking Models? Molecular Dynamics to the Rescue25
Combined Deep Learning and Classical Potential Approach for Modeling Diffusion in UiO-6625
ACES: Optimized Alchemically Enhanced Sampling25
Multilevel Density Functional Theory25
Accounting for the Central Role of Interfacial Water in Protein–Ligand Binding Free Energy Calculations25
Compressed-State Multistate Pair-Density Functional Theory25
Symmetry-Adapted Perturbation Theory Based on Multiconfigurational Wave Function Description of Monomers25
Accelerating Metadynamics-Based Free-Energy Calculations with Adaptive Machine Learning Potentials25
Twenty Years of Auxiliary-Field Quantum Monte Carlo in Quantum Chemistry: An Overview and Assessment on Main Group Chemistry and Bond-Breaking25
Quantum Simulation of Molecular Electronic States with a Transcorrelated Hamiltonian: Higher Accuracy with Fewer Qubits25
G Protein-Coupled Receptor–Ligand Dissociation Rates and Mechanisms from τRAMD Simulations25
CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications25
Multicomponent Unitary Coupled Cluster and Equation-of-Motion for Quantum Computation25
Analytic First-Order Derivatives of (X)MS, XDW, and RMS Variants of the CASPT2 and RASPT2 Methods24
Extending the Martini 3 Coarse-Grained Force Field to Carbohydrates24
General Perturb-Then-Diagonalize Model for the Vibrational Frequencies and Intensities of Molecules Belonging to Abelian and Non-Abelian Symmetry Groups24
Norm-Conserving Pseudopotentials and Basis Sets to Explore Actinide Chemistry in Complex Environments24
General Theory of Fragment Linking in Molecular Design: Why Fragment Linking Rarely Succeeds and How to Improve Outcomes24
ATP–Magnesium Coordination: Protein Structure-Based Force Field Evaluation and Corrections24
Comparison of Many-Particle Representations for Selected Configuration Interaction: II. Numerical Benchmark Calculations24
Predicting Biomolecular Binding Kinetics: A Review24
Learning to Optimize Molecular Geometries Using Reinforcement Learning24
pbqff: Push-Button Quartic Force Fields24
Ensembles Are Required to Handle Aleatoric and Parametric Uncertainty in Molecular Dynamics Simulation24
Quantum Mechanics/Extremely Localized Molecular Orbital Embedding Strategy for Excited States: Coupling to Time-Dependent Density Functional Theory and Equation-of-Motion Coupled Cluster24
The Many-Body Expansion for Aqueous Systems Revisited: II. Alkali Metal and Halide Ion–Water Interactions24
Systematic Optimization of a Fragment-Based Force Field against Experimental Pure-Liquid Properties Considering Large Compound Families: Application to Saturated Haloalkanes23
Ab Initio Surface-Hopping Simulation of Femtosecond Transient-Absorption Pump–Probe Signals of Nonadiabatic Excited-State Dynamics Using the Doorway–Window Representation23
Assessing the Accuracy of Tailored Coupled Cluster Methods Corrected by Electronic Wave Functions of Polynomial Cost23
Sequence-Engineering Polyethylene–Polypropylene Copolymers with High Thermal Conductivity Using a Molecular-Dynamics-Based Genetic Algorithm23
Transferable Neural Network Potential Energy Surfaces for Closed-Shell Organic Molecules: Extension to Ions23
A Perspective on Explanations of Molecular Prediction Models23
Data-Efficient Machine Learning Potentials from Transfer Learning of Periodic Correlated Electronic Structure Methods: Liquid Water at AFQMC, CCSD, and CCSD(T) Accuracy23
Fragment Diabatization Linear Vibronic Coupling Model for Quantum Dynamics of Multichromophoric Systems: Population of the Charge-Transfer State in the Photoexcited Guanine–Cytosine Pair23
ChemDyME: Kinetically Steered, Automated Mechanism Generation through Combined Molecular Dynamics and Master Equation Calculations23
Generalization of Intrinsic Orbitals to Kramers-Paired Quaternion Spinors, Molecular Fragments, and Valence Virtual Spinors23
Ion Solvation and Transport in Narrow Carbon Nanotubes: Effects of Polarizability, Cation−π Interaction, and Confinement23
Correlation-Consistent Gaussian Basis Sets for Solids Made Simple23
Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging23
Position-Dependent Diffusion from Biased Simulations and Markov State Model Analysis23
Permutationally Restrained Diabatization by Machine Intelligence23
Assessment of SAPT and Supermolecular EDA Approaches for the Development of Separable and Polarizable Force Fields23
How Can We Predict Accurate Electrochromic Shifts for Biochromophores? A Case Study on the Photosynthetic Reaction Center23
GLIMPS: A Machine Learning Approach to Resolution Transformation for Multiscale Modeling23
Oxidation State Localized Orbitals: A Method for Assigning Oxidation States Using Optimally Fragment-Localized Orbitals and a Fragment Orbital Localization Index23
Benchmark Structures and Conformational Landscapes of Amino Acids in the Gas Phase: A Joint Venture of Machine Learning, Quantum Chemistry, and Rotational Spectroscopy23
Alchemical Transfer Approach to Absolute Binding Free Energy Estimation23
Transfer Learning to CCSD(T): Accurate Anharmonic Frequencies from Machine Learning Models23
On-the-Fly Symmetrical Quasi-Classical Dynamics with Meyer–Miller Mapping Hamiltonian for the Treatment of Nonadiabatic Dynamics at Conical Intersections23
A Martini Coarse Grained Model of Citrate-Capped Gold Nanoparticles Interacting with Lipid Bilayers23
Comparing the Performance of Different AMBER Protein Forcefields, Partial Charge Assignments, and Water Models for Absolute Binding Free Energy Calculations22
Quasi-Relativistic Calculation of EPR g Tensors with Derivatives of the Decoupling Transformation, Gauge-Including Atomic Orbitals, and Magnetic Balance22
Optimized Hydrogen Mass Repartitioning Scheme Combined with Accurate Temperature/Pressure Evaluations for Thermodynamic and Kinetic Properties of Biological Systems22
Open Force Field Evaluator: An Automated, Efficient, and Scalable Framework for the Estimation of Physical Properties from Molecular Simulation22
AMBER Free Energy Tools: A New Framework for the Design of Optimized Alchemical Transformation Pathways22
NMR Coupling Constants Based on the Bethe–Salpeter Equation in the GW Approximation22
Taming the Sign Problem in Auxiliary-Field Quantum Monte Carlo Using Accurate Wave Functions22
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field22
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