OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 11. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Interplays of different types of epitranscriptomic mRNA modifications	89
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	56
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	50
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	49
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	49
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	48
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	45
A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics	42
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	41
Synthetic RNA biology	33
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	33
Selectivity of Exportin 5 binding to human precursor microRNAs	33
Architectures and complex functions of tandem riboswitches	32
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	31
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	31
RNA therapeutics	31
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	29
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	28
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	28
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	26
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	26
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	26
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	26
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	25
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	24

Defining the methanogenic SECIS element in vivo by targeted mutagenesis	23
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	23
European COST action CA16120 EPITRAN: the first four years and beyond	23
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	22
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	21
Efficient fractionation and analysis of ribosome assembly intermediates in human cells	21
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	21
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	20
Mistranslating the genetic code with leucine in yeast and mammalian cells	20
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	20
A novel role for nucleolin in splice site selection	19
Correction	19
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	19
The RBS1 domain of Gemin5 is intrinsically unstructured and interacts with RNA through conserved Arg and aromatic residues	19
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	19
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	19
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	18
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	18
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	18
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	18
Comparative analysis of circular RNA enrichment methods	17
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	17
An integrated DNA and RNA variant detector identifies a highly conserved three base exon in the MAP4K5 kinase locus	17
Production of human translation-competent lysates using dual centrifugation	17
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 ^Gag and its maturation products	16
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	16
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	16
Circular at the very beginning: on the initial genomes in the RNA world	16
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7	16
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	15
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	15
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	15
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	15
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	15
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	15
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	14
Abasic RNA: its formation and potential role in cellular stress response	14
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	14
EIciRNAs in focus: current understanding and future perspectives	14
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	14
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	14
Unique features of the m⁶A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
Unraveling C-to-U RNA editing events from direct RNA sequencing	14
Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis	13
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	13
The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13

The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	13
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	12
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Optimization of a fluorescent-mRNA based real-time assay for precise kinetic measurements of ribosomal translocation	12
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	12
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	12
Why are G-quadruplexes good at preventing protein aggregation?	12
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	12
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	12
Innovative developments and emerging technologies in RNA therapeutics	12
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	12
Hairpin sequence and structure is associated with features of isomiR biogenesis	12
Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing	12
Structural and computational studies of HIV-1 RNA	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	11
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database	11
SRSF5 regulates alternative splicing of DMTF1 pre-mRNA through modulating SF1 binding	11
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	11
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	11
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	11
The RNA editing enzyme ADAR2 restricts L1 mobility	11
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	11
Role of circular RNAs in DNA repair	11
Early recruitment of PARP-dependent m ⁸ A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
The role and function of lncRNA in ageing-associated liver diseases	11
Role of RNA polymerase III transcription and regulation in ischaemic stroke	11