OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 11. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-10-01 to 2024-10-01.)

Article	Citations
Recent advances in the regulation of plant miRNA biogenesis	79
Off-target effects of RNAi correlate with the mismatch rate between dsRNA and non-target mRNA	70
FTO demethylates m6A modifications in HOXB13 mRNA and promotes endometrial cancer metastasis by activating the WNT signalling pathway	67
3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists	60
Computational methods for RNA modification detection from nanopore direct RNA sequencing data	60
Adenosine-to-inosine RNA editing in neurological development and disease	59
Human umbilical cord mesenchymal stem cells-derived exosomal microRNA-451a represses epithelial–mesenchymal transition of hepatocellular carcinoma cells by inhibiting ADAM10	46
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	41
Advances in siRNA therapeutics and synergistic effect on siRNA activity using emerging dual ribose modifications	40
RNA-based therapeutics for neurological diseases	40
The role of lncRNAs in innate immunity and inflammation	39
Site-directed RNA editing: recent advances and open challenges	39
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	37
New progresses of circular RNA biology: from nuclear export to degradation	36
Functions and mechanisms of circular RNAs in regulating stem cell differentiation	35
Differential roles of YTHDF1 and YTHDF3 in embryonic stem cell-derived cardiomyocyte differentiation	34
LncRNAs in adaptive immunity: role in physiological and pathological conditions	33
Clinical advances of RNA therapeutics for treatment of neurological and neuromuscular diseases	32
mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation	31
Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants	28
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	28
MIR210HG regulates glycolysis, cell proliferation, and metastasis of pancreatic cancer cells through miR-125b-5p/HK2/PKM2 axis	27
Long non-coding RNA NEAT1_1 ameliorates TDP-43 toxicity in in vivo models of TDP-43 proteinopathy	27
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	26
Introducing differential RNA-seq mapping to track the early infection phase forPseudomonasphage ɸKZ	26

Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA	26
The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	26
The distinct roles of zinc finger CCHC-type (ZCCHC) superfamily proteins in the regulation of RNA metabolism	26
RNA folding and functions of RNA helicases in ribosome biogenesis	26
Molecular correction of Duchenne muscular dystrophy by splice modulation and gene editing	25
Silencing long non-coding RNA NEAT1 attenuates rheumatoid arthritis via the MAPK/ERK signalling pathway by downregulating microRNA-129 and microRNA-204	24
Novel insights into the roles of tRNA-derived small RNAs	24
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	23
Unique features of the m⁶A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	23
Peripheral blood microRNAs and the COVID-19 patient: methodological considerations, technical challenges and practice points	23
Demystifying mRNA vaccines: an emerging platform at the forefront of cryptic diseases	23
Innovative developments and emerging technologies in RNA therapeutics	23
NEDD4 triggers FOXA1 ubiquitination and promotes colon cancer progression under microRNA-340-5p suppression and ATF1 upregulation	21
MHC Class III RNA Binding Proteins and Immunity	21
CBRPP: a new RNA-centric method to study RNA–protein interactions	21
Interrogating lncRNA functions via CRISPR/Cas systems	21
On the functional relevance of spatiotemporally-specific patterns of experience-dependent long noncoding RNA expression in the brain	20
The isolated La-module of LARP1 mediates 3’ poly(A) protection and mRNA stabilization, dependent on its intrinsic PAM2 binding to PABPC1	20
Long non-coding RNA HOTAIR regulates myeloid differentiation through the upregulation of p21 via miR-17-5p in acute myeloid leukaemia	20
Bulges control pri-miRNA processing in a position and strand-dependent manner	20
Elucidating the cellular dynamics of the brain with single-cell RNA sequencing	19
The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells	19
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	19
Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration	19
A comprehensive coverage insurance for cells: revealing links between ribosome collisions, stress responses and mRNA surveillance	19
The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli	18
HSM6AP: a high-precision predictor for the HomosapiensN6-methyladenosine (m^6 A) based on multiple weights and feature stitching	18
Mitochondrial noncoding RNAs: new wine in an old bottle	18
Differential transcription profiling of the phage LUZ19 infection process in different growth media	18
LARP1 and LARP4: up close with PABP for mRNA 3’ poly(A) protection and stabilization	18
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	17
The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation	17
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	17
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	17
Tricks and threats of RNA viruses – towards understanding the fate of viral RNA	17
RNA transport from transcription to localized translation: a single molecule perspective	17
DARS-AS1 recruits METTL3/METTL14 to bind and enhance DARS mRNA m ⁶ A modification and translation for cytoprotective autophagy in cervical cancer	17
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation	16
Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation	16
Comparative analysis of circular RNA enrichment methods	16
SUVA: splicing site usage variation analysis from RNA-seq data reveals highly conserved complex splicing biomarkers in liver cancer	16
The effects of RNA editing in cancer tissue at different stages in carcinogenesis	16
Inhibition of CDK9 activity compromises global splicing in prostate cancer cells	16
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	16
Dissecting protein domain variability in the core RNA interference machinery of five insect orders	16
Insights into circular RNAs: their biogenesis, detection, and emerging role in cardiovascular disease	15
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	15
The DExD box ATPase DDX55 is recruited to domain IV of the 28S ribosomal RNA by its C-terminal region	15
Genetic tools for the stable overexpression of circular RNAs	15
LncRBase V.2: an updated resource for multispecies lncRNAs and ClinicLSNP hosting genetic variants in lncRNAs for cancer patients	14

In lysate RNA digestion provides insights into the angiogenin’s specificity towards transfer RNAs	14
Broad-range RNA modification analysis of complex biological samples using rapid C18-UPLC-MS	14
Structural and functional insights into human tRNA guanine transglycosylase	14
Alu RNA and their roles in human disease states	14
Comprehensive analysis of the translatome reveals the relationship between the translational and transcriptional control in high fat diet-induced liver steatosis	14
Caenorhabditis eleganssystemic RNA interference defective protein 1 enhances RNAi efficiency in a lepidopteran insect, the fall armyworm, in a tissue-specific manner	14
Bacterial RNA chaperones and chaperone-like riboregulators: behind the scenes of RNA-mediated regulation of cellular metabolism	14
Thrombosis-related circulating miR-16-5p is associated with disease severity in patients hospitalised for COVID-19	14
Human cytomegalovirus (HCMV)-encoded microRNAs: potential biomarkers and clinical applications	14
RNA methylation in chloroplasts or mitochondria in plants	14
U1 snRNP telescripting: molecular mechanisms and beyond	14
Deciphering nucleotide modification-induced structure and stability changes	13
Ribosome profiling analysis of human skeletal muscle identifies reduced translation of mitochondrial proteins with age	13
Selective packaged circular RNAs in milk extracellular vesicles during Staphylococcus aureus infection may have potential against bacterial infection	13
Gene co-expression and alternative splicing analysis of key metabolic tissues to unravel the regulatory signatures of fatty acid composition in cattle	13
A single mutation attenuates both the transcription termination and RNA-dependent RNA polymerase activity of T7 RNA polymerase	13
ncRNAs and polyphenols: new therapeutic strategies for hypertension	13
Long non-coding RNA RP11-283G6.5 confines breast cancer development through modulating miR-188-3p/TMED3/Wnt/β-catenin signalling	13
Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes	13
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	13
mRNAs sequestered in stress granules recover nearly completely for translation	13
Accurate identification of RNA D modification using multiple features	13
Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in Arabidopsis thalian a	13
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	13
A full repertoire of Hemiptera genomes reveals a multi-step evolutionary trajectory of auto-RNA editing site in insect Adar gene	13
Synergistic roles for human U1 snRNA stem-loops in pre-mRNA splicing	13
Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors	12
M6A-BiNP: predicting N⁶-methyladenosine sites based on bidirectional position-specific propensities of polynucleotides and pointwise joint mutual information	12
Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile	12
Production of human translation-competent lysates using dual centrifugation	12
Structural insights into dpCoA-RNA decapping by NudC	12
Spatiotemporal expression of long noncoding RNA Moshe modulates heart cell lineage commitment	12
PresRAT: a server for identification of bacterial small-RNA sequences and their targets with probable binding region	12
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	12
Nsp1 of SARS-CoV-2 stimulates host translation termination	12
Might exogenous circular RNAs act as protein-coding transcripts in plants?	12
U8 variants on the brain: a small nucleolar RNA and human disease	11
Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA	11
Hairpin sequence and structure is associated with features of isomiR biogenesis	11
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	11
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	11
Interplays of different types of epitranscriptomic mRNA modifications	11
Direct RNA–RNA interaction between Neat1 and RNA targets, as a mechanism for RNAs paraspeckle retention	11
RNA origami: design, simulation and application	11
CITEMO ^XMBD : A flexible single-cell multimodal omics analysis framework to reveal the heterogeneity of immune cells	11
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation	11
Principles and correction of 5’-splice site selection	11
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	11
Recent advances and potential applications of cross-kingdom movement of miRNAs in modulating plant’s disease response	11
Characterization of synthetic riboswitch in cell-free protein expression systems	11
LINC00857 regulated by ZNF460 enhances the expression of CLDN12 by sponging miR-150-5p and recruiting SRSF1 for alternative splicing to promote epithelial-mesenchymal transformation of pancreatic aden	11
Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast	11
miRNA: local guardians of presynaptic function in plasticity and disease	11
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	11
An epigenetic ‘extreme makeover’: the methylation of flaviviral RNA (and beyond)	11
Guanine Nucleotide-Binding Protein-Like 1 (GNL1) binds RNA G-quadruplex structures in genes associated with Parkinson’s disease	11