OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	69
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	62
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	60
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	59
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	51
Synthetic RNA biology	46
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	38
RNA therapeutics	36
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	33
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	33
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	31
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	31
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	31
The secret life of RNA and lipids	30
Architectures and complex functions of tandem riboswitches	28
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	28
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	27
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	27
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	26
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	26
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	26
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	24
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	24
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	23
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	22

Mistranslating the genetic code with leucine in yeast and mammalian cells	22
Biology and utilization of R2 retrotransposons	22
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	22
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	22
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
A novel role for nucleolin in splice site selection	21
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	21
Correction	21
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	21
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	21
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	21
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	20
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	20
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	20
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	19
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	19
Production of human translation-competent lysates using dual centrifugation	18
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	17
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	17
Comparative analysis of circular RNA enrichment methods	17
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	17
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	17
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	17
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	17
Circular at the very beginning: on the initial genomes in the RNA world	17
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	16
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	16
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	16
Unraveling C-to-U RNA editing events from direct RNA sequencing	15
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 ^Gag and its maturation products	15
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	15
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	15
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	15
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	15
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	14
Abasic RNA: its formation and potential role in cellular stress response	14
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	14
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	14
Unique features of the m⁶A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	14
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	12
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	12
Cleavage sequence specificity of Nsp15	12
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	12
EIciRNAs in focus: current understanding and future perspectives	12

Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	12
Why are G-quadruplexes good at preventing protein aggregation?	11
Innovative developments and emerging technologies in RNA therapeutics	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
An elusive debate on the evidence for RNA editing in SARS-CoV-2	11
MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	11
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	11
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	11
Early recruitment of PARP-dependent m ⁸ A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
Structural and computational studies of HIV-1 RNA	10
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	10
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	10
Identification and characterization of new structured RNA classes in plants	10
Role of circular RNAs in DNA repair	10
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	10
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	10
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	10
Role of RNA polymerase III transcription and regulation in ischaemic stroke	10
Exploring RNA modifications in infectious non-coding circular RNAs	10
The role and function of lncRNA in ageing-associated liver diseases	9
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	9
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	9
Germ granule-mediated mRNA storage and translational control	9
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	9
A scalable system for the fast production of RNA with homogeneous terminal ends	9
m6A modification of RNA in cervical cancer: role and clinical perspectives	9
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	9
Distinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves	9
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
PRKCE non-coding variants influence on transcription as well as translation of its gene	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	9
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	9
sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction	9
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends	9
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	9
ncRNAs and polyphenols: new therapeutic strategies for hypertension	9