OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-06-01 to 2026-06-01.)

Article	Citations
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	77
lncRNAs: key player in Aβ deposition	44
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	44
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	42
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	41
RNA therapeutics	39
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	38
Architectures and complex functions of tandem riboswitches	38
The secret life of RNA and lipids	34
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	32
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	31
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	28
Synthetic RNA biology	28
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	28
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	27
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	27
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	27
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	26
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	25
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	25
Mistranslating the genetic code with leucine in yeast and mammalian cells	23
Biology and utilization of R2 retrotransposons	23
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	23
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	23
Small molecule inhibition of RNA binding proteins in haematologic cancer	22

An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	22
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	21
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	21
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	21
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	21
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	21
Correction	21
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	21
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	20
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	20
Decoding RNA–protein interactions using high-throughput methods	20
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	19
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	19
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	18
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	18
Conversations at the crossroads of the Human RNome Project: a collaborative reflection by the RNome Early Career Researchers	18
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	17
Circular at the very beginning: on the initial genomes in the RNA world	17
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	17
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	16
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	16
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	16
Bevacizumab induces apoptosis in glioblastoma cells by upregulating miR-4695-5p to inhibit PKMYT1	15
Unraveling C-to-U RNA editing events from direct RNA sequencing	15
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	15
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	15
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	14
Abasic RNA: its formation and potential role in cellular stress response	14
EIciRNAs in focus: current understanding and future perspectives	14
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
Why are G-quadruplexes good at preventing protein aggregation?	14
Cleavage sequence specificity of Nsp15	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	13
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Change of guards: ELAVL proteins switch miRNA export responsibility to regulate differentiation of PC12 cells	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13
Nusinersen: the antisense oligonucleotide at the forefront of spinal muscular atrophy treatment	12
MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	12
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	12
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	12
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Early recruitment of PARP-dependent m ⁸ A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	11
Structural and computational studies of HIV-1 RNA	11

Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	11
Role of circular RNAs in DNA repair	11
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	11
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	10
m6A modification of RNA in cervical cancer: role and clinical perspectives	10
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	10
The role and function of lncRNA in ageing-associated liver diseases	10
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	10
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	10
A scalable system for the fast production of RNA with homogeneous terminal ends	10
Identification and characterization of new structured RNA classes in plants	10
PRKCE non-coding variants influence on transcription as well as translation of its gene	9
Germ granule-mediated mRNA storage and translational control	9
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	9
Reading the SINEs – functionality in noncoding RNA ‘cheap genes’	9
Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines	9
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	9