RNA Biology

Article	Citations
Interplays of different types of epitranscriptomic mRNA modifications	89
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	56
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	50
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	49
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	49
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	48
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	45
A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics	42
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	41
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	33
Selectivity of Exportin 5 binding to human precursor microRNAs	33
Synthetic RNA biology	33
Architectures and complex functions of tandem riboswitches	32
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	31
RNA therapeutics	31
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	31
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	29
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	28
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	28
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	26
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	26
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	26
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	26
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	25
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	24

Defining the methanogenic SECIS element in vivo by targeted mutagenesis	23
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	23
European COST action CA16120 EPITRAN: the first four years and beyond	23
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	22
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	21
Efficient fractionation and analysis of ribosome assembly intermediates in human cells	21
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	21
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	20
Mistranslating the genetic code with leucine in yeast and mammalian cells	20
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	20
Correction	19
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	19
The RBS1 domain of Gemin5 is intrinsically unstructured and interacts with RNA through conserved Arg and aromatic residues	19
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	19
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	19
A novel role for nucleolin in splice site selection	19
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	18
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	18
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	18
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	18
An integrated DNA and RNA variant detector identifies a highly conserved three base exon in the MAP4K5 kinase locus	17
Production of human translation-competent lysates using dual centrifugation	17
Comparative analysis of circular RNA enrichment methods	17
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	17
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	16
Circular at the very beginning: on the initial genomes in the RNA world	16
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7	16
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 Gag and its maturation products	16
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	16
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	15
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	15
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	15
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	15
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	15
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	15
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	14
Abasic RNA: its formation and potential role in cellular stress response	14
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	14
EIciRNAs in focus: current understanding and future perspectives	14
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	14
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	14
Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
Unraveling C-to-U RNA editing events from direct RNA sequencing	14
The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13

Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	13
Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis	13
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	13
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	12
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	12
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	12
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	12
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	12
Innovative developments and emerging technologies in RNA therapeutics	12
Hairpin sequence and structure is associated with features of isomiR biogenesis	12
Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing	12
Why are G-quadruplexes good at preventing protein aggregation?	12
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Optimization of a fluorescent-mRNA based real-time assay for precise kinetic measurements of ribosomal translocation	12
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	12
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	11
Role of circular RNAs in DNA repair	11
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
The role and function of lncRNA in ageing-associated liver diseases	11
Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
Structural and computational studies of HIV-1 RNA	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	11
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database	11
SRSF5 regulates alternative splicing of DMTF1 pre-mRNA through modulating SF1 binding	11
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	11
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	11
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	11
The RNA editing enzyme ADAR2 restricts L1 mobility	11
Distinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves	10
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	10
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends	10
sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction	10
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	10
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucleotidyltransferas	10
SUVA: splicing site usage variation analysis from RNA-seq data reveals highly conserved complex splicing biomarkers in liver cancer	10
m6A modification of RNA in cervical cancer: role and clinical perspectives	10
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	10
Germ granule-mediated mRNA storage and translational control	9
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	9
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
PRKCE non-coding variants influence on transcription as well as translation of its gene	9
A scalable system for the fast production of RNA with homogeneous terminal ends	9
MIR210HG regulates glycolysis, cell proliferation, and metastasis of pancreatic cancer cells through miR-125b-5p/HK2/PKM2 axis	9
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
tRNA modifications: greasing the wheels of translation and beyond	8
Investigating the role of RNA structures in transcriptional pausing using in vitro assays and in silico analyses	8
Correction	8
Coleopteran-specific StaufenC functions like Drosophila melanogaster Loquacious-PD in dsRNA processing	8
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	8
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation	8
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
mRNA vaccine designs for optimal adjuvanticity and delivery	8
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	8
ncRNAs and polyphenols: new therapeutic strategies for hypertension	8
mRNAs sequestered in stress granules recover nearly completely for translation	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
The androgen receptor messenger RNA: what do we know?	8
Two Piwis with Ago-like functions silence somatic genes at the chromatin level	7
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	7
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	7
TBP facilitates RNA Polymerase I transcription following mitosis	7
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	7
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	7
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	7
Differential translation elongation directs protein synthesis in response to acute glucose deprivation in yeast	7
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
STAT3-induced ZBED3-AS1 promotes the malignant phenotypes of melanoma cells by activating PI3K/AKT signaling pathway	7
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	7
Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA	6
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	6

Alu RNA and their roles in human disease states	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	6
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	6
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	6
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	6
Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands	6
MustSeq, an alternative approach for multiplexible strand-specific 3’ end sequencing of mRNA transcriptome confers high efficiency and practicality	6
RNA folding and functions of RNA helicases in ribosome biogenesis	6
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	6
RNA polymerase II is recruited to DNA double-strand breaks for dilncRNA transcription in Drosophila	6
RNA-containing extracellular vesicles in infection	6
A DNA intercalating dye-based RT-qPCR alternative to diagnose SARS-CoV-2	6
The enigmatic RNase MRP of kinetoplastids	6
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	6
Flexible pri-miRNA structures enable tunable production of 5’ isomiRs	6
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	6
Structures and functions of short argonautes	5
Custom long non-coding RNA capture enhances detection sensitivity in different human sample types	5
The dark side of the ribosome life cycle	5
Duplex formation between the template and the nascent strand in the transcription-regulating sequences is associated with the site of template switching in SARS – CoV-2	5
Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors	5
Inactivation of the riboswitch-controlled GMP synthase GuaA in Clostridioides difficile is associated with severe growth defects and poor infectivity in a mouse model of infection	5
Pre-mRNA splicing-associated diseases and therapies	5
Retrotransposon life cycle and its impacts on cellular responses	5
Maturation of small nucleolar RNAs: from production to function	5
LINC00857 regulated by ZNF460 enhances the expression of CLDN12 by sponging miR-150-5p and recruiting SRSF1 for alternative splicing to promote epithelial-mesenchymal transformation of pancreatic aden	5
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is mis-spliced in striated muscle diseases	5
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migratoria	5
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	5
A novel lncRNA derived from an ultraconserved region: lnc-uc.147, a potential biomarker in luminal A breast cancer	5
Reproducible and efficient new method of RNA 3’-end labelling by CutA nucleotidyltransferase-mediated CC-tailing	5
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	5
Splice site proximity influences alternative exon definition	5
The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	5
Comprehensive characterization of mRNAs associated with yeast cytosolic aminoacyl-tRNA synthetases	5
Novel synthetic 3’-untranslated regions for controlling transgene expression in transgenicAedes aegyptimosquitoes	5
Identification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry	5
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	5
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	5
Identifying candidate structured RNAs in CRISPR operons	5
FRMC: a fast and robust method for the imputation of scRNA-seq data	5
Novel insights into the roles of tRNA-derived small RNAs	5
Pervasive transcription of the mitochondrial genome in Candida albicans is revealed in mutants lacking the mtEXO RNase complex	5
Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	5
Mitochondrial RNA maturation	5
The catalytic activity of methyltransferase METTL15 is dispensable for its role in mitochondrial ribosome biogenesis	4
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	4
Research progress of circRNA in malignant tumour metabolic reprogramming	4
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	4
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	4
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	4
Temperature-sensing riboceptors	4
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	4
An orthology-based methodology as a complementary approach to retrieve evolutionarily conserved A-to-I RNA editing sites	4
RNA modifications act as regulators of cell death	4
Circular RNAs in non-alcoholic fatty liver disease: Functions and clinical significance	4
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	4
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	4
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	4
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	4
Ordering events in a developing genetic code	4
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	4
Mitochondrial noncoding RNAs: new wine in an old bottle	4
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	4
Extracellular RNA in oncogenesis, metastasis and drug resistance	4
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	4
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	4
Conditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing	4
Mechanistic insights into non-coding Y RNA processing	4
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	4