RNA Biology

Article	Citations
Recent advances in the regulation of plant miRNA biogenesis	79
Off-target effects of RNAi correlate with the mismatch rate between dsRNA and non-target mRNA	70
FTO demethylates m6A modifications in HOXB13 mRNA and promotes endometrial cancer metastasis by activating the WNT signalling pathway	67
Computational methods for RNA modification detection from nanopore direct RNA sequencing data	60
3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists	60
Adenosine-to-inosine RNA editing in neurological development and disease	59
Human umbilical cord mesenchymal stem cells-derived exosomal microRNA-451a represses epithelial–mesenchymal transition of hepatocellular carcinoma cells by inhibiting ADAM10	46
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	41
RNA-based therapeutics for neurological diseases	40
Advances in siRNA therapeutics and synergistic effect on siRNA activity using emerging dual ribose modifications	40
The role of lncRNAs in innate immunity and inflammation	39
Site-directed RNA editing: recent advances and open challenges	39
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	37
New progresses of circular RNA biology: from nuclear export to degradation	36
Functions and mechanisms of circular RNAs in regulating stem cell differentiation	35
Differential roles of YTHDF1 and YTHDF3 in embryonic stem cell-derived cardiomyocyte differentiation	34
LncRNAs in adaptive immunity: role in physiological and pathological conditions	33
Clinical advances of RNA therapeutics for treatment of neurological and neuromuscular diseases	32
mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation	31
Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants	28
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	28
MIR210HG regulates glycolysis, cell proliferation, and metastasis of pancreatic cancer cells through miR-125b-5p/HK2/PKM2 axis	27
Long non-coding RNA NEAT1_1 ameliorates TDP-43 toxicity in in vivo models of TDP-43 proteinopathy	27
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	26
Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA	26

The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	26
The distinct roles of zinc finger CCHC-type (ZCCHC) superfamily proteins in the regulation of RNA metabolism	26
RNA folding and functions of RNA helicases in ribosome biogenesis	26
Molecular correction of Duchenne muscular dystrophy by splice modulation and gene editing	25
Silencing long non-coding RNA NEAT1 attenuates rheumatoid arthritis via the MAPK/ERK signalling pathway by downregulating microRNA-129 and microRNA-204	24
Novel insights into the roles of tRNA-derived small RNAs	24
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	23
Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	23
Peripheral blood microRNAs and the COVID-19 patient: methodological considerations, technical challenges and practice points	23
Demystifying mRNA vaccines: an emerging platform at the forefront of cryptic diseases	23
Innovative developments and emerging technologies in RNA therapeutics	23
NEDD4 triggers FOXA1 ubiquitination and promotes colon cancer progression under microRNA-340-5p suppression and ATF1 upregulation	21
MHC Class III RNA Binding Proteins and Immunity	21
CBRPP: a new RNA-centric method to study RNA–protein interactions	21
Interrogating lncRNA functions via CRISPR/Cas systems	21
On the functional relevance of spatiotemporally-specific patterns of experience-dependent long noncoding RNA expression in the brain	20
The isolated La-module of LARP1 mediates 3’ poly(A) protection and mRNA stabilization, dependent on its intrinsic PAM2 binding to PABPC1	20
Long non-coding RNA HOTAIR regulates myeloid differentiation through the upregulation of p21 via miR-17-5p in acute myeloid leukaemia	20
Bulges control pri-miRNA processing in a position and strand-dependent manner	20
A comprehensive coverage insurance for cells: revealing links between ribosome collisions, stress responses and mRNA surveillance	19
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	19
The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells	19
Elucidating the cellular dynamics of the brain with single-cell RNA sequencing	19
Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration	19
HSM6AP: a high-precision predictor for the HomosapiensN6-methyladenosine (m^6 A) based on multiple weights and feature stitching	18
LARP1 and LARP4: up close with PABP for mRNA 3’ poly(A) protection and stabilization	18
Differential transcription profiling of the phage LUZ19 infection process in different growth media	18
Mitochondrial noncoding RNAs: new wine in an old bottle	18
RNA transport from transcription to localized translation: a single molecule perspective	17
DARS-AS1 recruits METTL3/METTL14 to bind and enhance DARS mRNA m 6 A modification and translation for cytoprotective autophagy in cervical cancer	17
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	17
The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation	17
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	17
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	17
Tricks and threats of RNA viruses – towards understanding the fate of viral RNA	17
Inhibition of CDK9 activity compromises global splicing in prostate cancer cells	16
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	16
Dissecting protein domain variability in the core RNA interference machinery of five insect orders	16
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation	16
Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation	16
Comparative analysis of circular RNA enrichment methods	16
SUVA: splicing site usage variation analysis from RNA-seq data reveals highly conserved complex splicing biomarkers in liver cancer	16
The effects of RNA editing in cancer tissue at different stages in carcinogenesis	16
Genetic tools for the stable overexpression of circular RNAs	15
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	15
Insights into circular RNAs: their biogenesis, detection, and emerging role in cardiovascular disease	15
Broad-range RNA modification analysis of complex biological samples using rapid C18-UPLC-MS	14
U1 snRNP telescripting: molecular mechanisms and beyond	14
Alu RNA and their roles in human disease states	14
Human cytomegalovirus (HCMV)-encoded microRNAs: potential biomarkers and clinical applications	14

Caenorhabditis eleganssystemic RNA interference defective protein 1 enhances RNAi efficiency in a lepidopteran insect, the fall armyworm, in a tissue-specific manner	14
Structural and functional insights into human tRNA guanine transglycosylase	14
Thrombosis-related circulating miR-16-5p is associated with disease severity in patients hospitalised for COVID-19	14
RNA methylation in chloroplasts or mitochondria in plants	14
In lysate RNA digestion provides insights into the angiogenin’s specificity towards transfer RNAs	14
Bacterial RNA chaperones and chaperone-like riboregulators: behind the scenes of RNA-mediated regulation of cellular metabolism	14
Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes	13
Deciphering nucleotide modification-induced structure and stability changes	13
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	13
A single mutation attenuates both the transcription termination and RNA-dependent RNA polymerase activity of T7 RNA polymerase	13
Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in Arabidopsis thalian a	13
ncRNAs and polyphenols: new therapeutic strategies for hypertension	13
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	13
Synergistic roles for human U1 snRNA stem-loops in pre-mRNA splicing	13
Ribosome profiling analysis of human skeletal muscle identifies reduced translation of mitochondrial proteins with age	13
Accurate identification of RNA D modification using multiple features	13
Selective packaged circular RNAs in milk extracellular vesicles during Staphylococcus aureus infection may have potential against bacterial infection	13
A full repertoire of Hemiptera genomes reveals a multi-step evolutionary trajectory of auto-RNA editing site in insect Adar gene	13
Long non-coding RNA RP11-283G6.5 confines breast cancer development through modulating miR-188-3p/TMED3/Wnt/β-catenin signalling	13
mRNAs sequestered in stress granules recover nearly completely for translation	13
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	12
Nsp1 of SARS-CoV-2 stimulates host translation termination	12
Might exogenous circular RNAs act as protein-coding transcripts in plants?	12
Structural insights into dpCoA-RNA decapping by NudC	12
M6A-BiNP: predicting N6-methyladenosine sites based on bidirectional position-specific propensities of polynucleotides and pointwise joint mutual information	12
Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile	12
Production of human translation-competent lysates using dual centrifugation	12
Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors	12
Spatiotemporal expression of long noncoding RNA Moshe modulates heart cell lineage commitment	12
Characterization of synthetic riboswitch in cell-free protein expression systems	11
LINC00857 regulated by ZNF460 enhances the expression of CLDN12 by sponging miR-150-5p and recruiting SRSF1 for alternative splicing to promote epithelial-mesenchymal transformation of pancreatic aden	11
Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast	11
miRNA: local guardians of presynaptic function in plasticity and disease	11
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	11
An epigenetic ‘extreme makeover’: the methylation of flaviviral RNA (and beyond)	11
Guanine Nucleotide-Binding Protein-Like 1 (GNL1) binds RNA G-quadruplex structures in genes associated with Parkinson’s disease	11
U8 variants on the brain: a small nucleolar RNA and human disease	11
Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA	11
Hairpin sequence and structure is associated with features of isomiR biogenesis	11
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	11
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	11
Interplays of different types of epitranscriptomic mRNA modifications	11
Direct RNA–RNA interaction between Neat1 and RNA targets, as a mechanism for RNAs paraspeckle retention	11
RNA origami: design, simulation and application	11
CITEMO XMBD : A flexible single-cell multimodal omics analysis framework to reveal the heterogeneity of immune cells	11
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation	11
Principles and correction of 5’-splice site selection	11
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	11
Recent advances and potential applications of cross-kingdom movement of miRNAs in modulating plant’s disease response	11
A chromatin-associated splicing isoform of OIP5-AS1 acts in cis to regulate the OIP5 oncogene	10
Identification of conserved slow codons that are important for protein expression and function	10
Localization of RNAs in the nucleus: cis- and trans- regulation	10
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	10
MicroRNA-140-3p alleviates intervertebral disc degeneration via KLF5/N-cadherin/MDM2/Slug axis	10
Target-capture full-length double-strand cDNA sequencing for alternative splicing analysis	10
N6-methyladenosine RNA modification and its interaction with regulatory non-coding RNAs in colorectal cancer	10
Optimal RNA binding by Egalitarian, a Dynein cargo adaptor, is critical for maintaining oocyte fate in Drosophila	10
A conserved motif in human BTG1 and BTG2 proteins mediates interaction with the poly(A) binding protein PABPC1 to stimulate mRNA deadenylation	10
Promoter antisense RNAs: beyond transcription by-products of active promoters	10
The many ways Epstein-Barr virus takes advantage of the RNA tool kit	10
Identification of host factors binding to dengue and Zika virus subgenomic RNA by efficient yeast three-hybrid screens of the human ORFeome	10
Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA	10
A genetic variant alters the secondary structure of the lncRNA H19 and is associated with dilated cardiomyopathy	10
Architectures and complex functions of tandem riboswitches	10
Hypoxia activated long non-coding RNA HABON regulates the growth and proliferation of hepatocarcinoma cells by binding to and antagonizing HIF-1 alpha	10
The RBS1 domain of Gemin5 is intrinsically unstructured and interacts with RNA through conserved Arg and aromatic residues	10
Comprehensive characterization of mRNAs associated with yeast cytosolic aminoacyl-tRNA synthetases	10
sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction	10
Structure of S. pombe telomerase protein Pof8 C-terminal domain is an xRRM conserved among LARP7 proteins	10
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	10
Nuclear SR-protein mediated mRNA quality control is continued in cytoplasmic nonsense-mediated decay	10
Exosomes provide unappreciated carrier effects that assist transfers of their miRNAs to targeted cells; I. They are ‘The Elephant in the Room’	9
M6ADD: a comprehensive database of m6A modifications in diseases	9
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	9
Variations in transfer and ribosomal RNA epitranscriptomic status can adapt eukaryote translation to changing physiological and environmental conditions	9
RNA nanotechnology to build a dodecahedral genome of single-stranded RNA virus	9
Regulation of mRNA stability by RBPs and noncoding RNAs contributing to the pathogenicity of Th17 cells	9
Gastrodin promotes CNS myelination via a lncRNA Gm7237/miR-142a/MRF pathway	9
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	9
Intron-assisted, viroid-based production of insecticidal circular double-stranded RNA in Escherichia coli	9

Interplay between host non-coding RNAs and influenza viruses	9
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	9
Ribonuclease E strongly impacts bacterial adaptation to different growth conditions	9
Dihydrouridine synthesis in tRNAs is under reductive evolution in Mollicutes	9
Genomically Hardwired Regulation of Gene Activity Orchestrates Cellular Iron Homeostasis in Arabidopsis	9
Substrate recognition mechanism of tRNA-targeting ribonuclease, colicin D, and an insight into tRNA cleavage-mediated translation impairment	9
microRNA-21: a key modulator in oncogenic viral infections	9
Mechanistic insights into non-coding Y RNA processing	9
Regulation and function of alternative polyadenylation in development and differentiation	9
Pre-mRNA splicing-associated diseases and therapies	9
RGG-motif containing mRNA export factor Gbp2 acts as a translation repressor	9
Identification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry	8
A DNA intercalating dye-based RT-qPCR alternative to diagnose SARS-CoV-2	8
PhasiRNAnalyzer: an integrated analyser for plant phased siRNAs	8
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	8
Landscape of tissue-specific RNA Editome provides insight into co-regulated and altered gene expression in pigs (Sus-scrofa)	8
Splice site proximity influences alternative exon definition	8
Recent progress in miRNA biogenesis and decay	8
RNA modifications act as regulators of cell death	8
SARS-CoV-2 Nsp1 mediated mRNA degradation requires mRNA interaction with the ribosome	8
TDP43 ribonucleoprotein granules: physiologic function to pathologic aggregates	8
Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing	8
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	8
ncRNA BC1 influences translation in the oocyte	8
Biochemical analysis of cleavage and ligation activities of the pistol ribozyme from Paenibacillus polymyxa	8
The evolutionary landscape and expression pattern of plant lincRNAs	8
A novel fluorescent reporter sensitive to serine mis-incorporation	7
Discovery and functional understanding of MiRNAs in molluscs: a genome-wide profiling approach	7
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	7
A beneficial fungal root endophyte triggers systemic RNA silencing and DNA methylation of a host reporter gene	7
Towards the mechanism(s) of YB-3 synthesis regulation by YB-1	7
PCID2, a subunit of the Drosophila TREX-2 nuclear export complex, is essential for both mRNA nuclear export and its subsequent cytoplasmic trafficking	7
The androgen receptor messenger RNA: what do we know?	7
Ageing-associated small RNA cargo of extracellular vesicles	7
Exploring the expression and functionality of the rsm sRNAs in Pseudomonas syringae pv. tomato DC3000	7
The uniqueness of AlaRS and its human disease connections	7
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	7
miRSM: an R package to infer and analyse miRNA sponge modules in heterogeneous data	7
Annexin A2 binds the internal ribosomal entry site of c-myc mRNA and regulates its translation	7
Amber codon is genetically unstable in generation of premature termination codon (PTC)-harbouring Foot-and-mouth disease virus (FMDV) via genetic code expansion	7
PRKCE non-coding variants influence on transcription as well as translation of its gene	7
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	7
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	7
Selectivity of Exportin 5 binding to human precursor microRNAs	7
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 Gag and its maturation products	7
Thermal adaptation of structural dynamics and regulatory function of adenine riboswitch	6
Cup is essential for oskar mRNA translational repression during early Drosophila oogenesis	6
Post-transcriptional regulation of redox homeostasis by the small RNA SHOxi in haloarchaea	6
Recruitment of Xrn1 to stress-induced genes allows efficient transcription by controlling RNA polymerase II backtracking	6
Pervasive transcription of the mitochondrial genome in Candida albicans is revealed in mutants lacking the mtEXO RNase complex	6
Efficient fractionation and analysis of ribosome assembly intermediates in human cells	6
Implications of LncRNAs and CircRNAs in psoriasis: a review	6
Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis	6
A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics	6
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	6
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	6
Duplex formation between the template and the nascent strand in the transcription-regulating sequences is associated with the site of template switching in SARS – CoV-2	6
A novel lncRNA derived from an ultraconserved region: lnc-uc.147, a potential biomarker in luminal A breast cancer	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
mRNA nuclear export: how mRNA identity features distinguish functional RNAs from junk transcripts	6
Identification and characterization of key long non-coding RNAs in the mouse cochlea	6
Identification of nucleotide sequences and some proteins involved in polyadenylation of RNA transcribed by Pol III from SINEs	6
Progress and application of epitranscriptomic m 6 A modification in gastric cancer	6
Inactivation of the riboswitch-controlled GMP synthase GuaA in Clostridioides difficile is associated with severe growth defects and poor infectivity in a mouse model of infection	6
The role and mechanism of miR-557 in inhibiting the differentiation and maturation of megakaryocytes in immune thrombocytopenia	6
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	6
Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands	6
Specialised ribosomes as versatile regulators of gene expression	6
SRSF5 regulates alternative splicing of DMTF1 pre-mRNA through modulating SF1 binding	5
The RNA structurome in the asexual blood stages of malaria pathogen plasmodium falciparum	5
Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	5
Dengue virus strain 2 capsid protein switches the annealing pathway and reduces intrinsic dynamics of the conserved 5’ untranslated region	5
Coleopteran-specific StaufenC functions like Drosophila melanogaster Loquacious-PD in dsRNA processing	5
A novel role for nucleolin in splice site selection	5
Impact of phage predation on P. aeruginosa adhered to human airway epithelium: major transcriptomic changes in metabolism and virulence-associated genes	5
Global identification of RsmA/N binding sites inPseudomonas aeruginosabyin vivoUV CLIP-seq	5
Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sites	5
Polynucleotide phosphorylase and RNA helicase CshA cooperate inBacillus subtilismRNA decay	5
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	5
RNA modification-mediated translational control in immune cells	5
Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7	5
Editome landscape of CCM-derived endothelial cells	5
Dynamic RNA synthetic biology: new principles, practices and potential	5
Poly(I:C) transfection induces a pro-inflammatory cascade in murine mammary carcinoma and fibrosarcoma cells	5
Circular versus linear RNA topology: different modes of RNA–RNA interactions in vitro and in human cells	5
The A to I editing landscape in melanoma and its relation to clinical outcome	5
5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA	5
Efficient antisense inhibition reveals microRNA-155 to restrain a late-myeloid inflammatory programme in primary human phagocytes	5
Bioinformatic prediction reveals posttranscriptional regulation of the chromosomal replication initiator gene dnaA by the attenuator sRNA rnTrpL in Escherichia coli	5
lncRNADetector: a bioinformatics pipeline for long non-coding RNA identification and MAPslnc: a repository of medicinal and aromatic plant lncRNAs	5
A new fungus-mediated RNAi method established and used to study the fatty acid and retinol binding protein function of the plant-parasitic nematode Aphelenchoides besseyi	5
crRNA complementarity shifts endogenous CRISPR-Cas systems between transcriptional repression and DNA defense	5
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends	5
Mechanisms of ribosome recycling in bacteria and mitochondria: a structural perspective	5