RNA Biology

Article	Citations
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	77
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	44
lncRNAs: key player in Aβ deposition	44
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	42
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	41
RNA therapeutics	39
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	38
Architectures and complex functions of tandem riboswitches	38
The secret life of RNA and lipids	34
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	32
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	31
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	28
Synthetic RNA biology	28
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	28
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	27
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	27
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	27
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	26
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	25
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	25
Mistranslating the genetic code with leucine in yeast and mammalian cells	23
Biology and utilization of R2 retrotransposons	23
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	23
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	23
Small molecule inhibition of RNA binding proteins in haematologic cancer	22

An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	22
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	21
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	21
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	21
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	21
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	21
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	21
Correction	21
Decoding RNA–protein interactions using high-throughput methods	20
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	20
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	20
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	19
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	19
Conversations at the crossroads of the Human RNome Project: a collaborative reflection by the RNome Early Career Researchers	18
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	18
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	18
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	17
Circular at the very beginning: on the initial genomes in the RNA world	17
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	17
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	16
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	16
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	16
Bevacizumab induces apoptosis in glioblastoma cells by upregulating miR-4695-5p to inhibit PKMYT1	15
Unraveling C-to-U RNA editing events from direct RNA sequencing	15
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	15
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	15
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	14
Abasic RNA: its formation and potential role in cellular stress response	14
EIciRNAs in focus: current understanding and future perspectives	14
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
Why are G-quadruplexes good at preventing protein aggregation?	14
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13
Cleavage sequence specificity of Nsp15	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	13
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Change of guards: ELAVL proteins switch miRNA export responsibility to regulate differentiation of PC12 cells	13
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
Nusinersen: the antisense oligonucleotide at the forefront of spinal muscular atrophy treatment	12
MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	12
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	12
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	12
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	11
Structural and computational studies of HIV-1 RNA	11

Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	11
Role of circular RNAs in DNA repair	11
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	11
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	10
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	10
m6A modification of RNA in cervical cancer: role and clinical perspectives	10
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	10
The role and function of lncRNA in ageing-associated liver diseases	10
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	10
A scalable system for the fast production of RNA with homogeneous terminal ends	10
Identification and characterization of new structured RNA classes in plants	10
Germ granule-mediated mRNA storage and translational control	9
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	9
Reading the SINEs – functionality in noncoding RNA ‘cheap genes’	9
Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines	9
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	9
PRKCE non-coding variants influence on transcription as well as translation of its gene	9
Long non-coding RNA transcripts in crucian carp brain – annotation and expression patterns in anoxia and reoxygenation	8
Investigating the role of RNA structures in transcriptional pausing using in vitro assays and in silico analyses	8
A transformer-based method for the cap analysis of gene expression and gene expression tag associated capping region prediction in RNA	8
Essential role of hsa-miR-203a-3p in type I interferons immune homeostasis during influenza and NDV infection	8
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	8
mRNAs sequestered in stress granules recover nearly completely for translation	8
Dynamic shifts in isomiR profiles during parasite maturation of Fasciola hepatica	8
mRNA vaccine designs for optimal adjuvanticity and delivery	8
tRNA modifications: greasing the wheels of translation and beyond	8
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	8
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucle	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
Correction	8
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
Dual synthesis pathways of scaRNA28 via intronic processing of transformation/transcription domain-associated protein transcripts and a novel independent transcription unit	7
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	7
Alternative cleavage and polyadenylation: key regulatory mechanisms in health and disease	7
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	7
RGG-motif protein Scd6 affects oxidative stress response by regulating cytosolic caTalase T1 (Ctt1)	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners	7
Role of small intronic RNAs in the crosstalk between immune cells and β-cells during type 1 diabetes development	7
NSUN2 as an emerging epigenetic regulator in cancer: from biomarker to therapeutic target	7
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	7
The androgen receptor messenger RNA: what do we know?	7
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	7
Snhg12 targets miR-199a-5p to regulate osteogenic differentiation of TDSCs via the Fzd4/Wnt/β-catenin pathway	7
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	7
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	7
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	7
Crosstalk between RNA secondary and three-dimensional structure prediction: a comprehensive study	6
The mRNA architecture of the translation termination site primes programmed stop codon readthrough events in Drosophila	6
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	6
RNA folding and functions of RNA helicases in ribosome biogenesis	6
C-terminal tagging impairs AGO2 function	6
RNA G-quadruplex-protein interactions: from nuclear RNA processing to cytoplasmic stress response and neurodegeneration	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	6
TBP facilitates RNA Polymerase I transcription following mitosis	6
Direct and indirect effects of spliceosome disruption compromise gene regulation by nonsense-mediated mRNA decay	6
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	6
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	6
Translation elongation: measurements and applications	5
Retrotransposon life cycle and its impacts on cellular responses	5
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	5
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	5
Maturation of small nucleolar RNAs: from production to function	5
RNA-containing extracellular vesicles in infection	5
The dark side of the ribosome life cycle	5
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	5
Splice site proximity influences alternative exon definition	5
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	5
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	4
Structures and functions of short argonautes	4
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	4
Structure-driven function of plant lncRNAs: conserved RNA architectures in transcriptional and post-transcriptional regulation	4

Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	4
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	4
Carrot and stick: how RNase R contributes to function and destruction of the translation machinery	4
Enhanced cleavage of genomic CCR5 using CasX2 Max	4
Mitochondrial RNA maturation	4
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments	4
5PSeq Explorer: interactive analysis of co-translational mRNA decay and ribosome dynamics	4
Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	4
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migratoria	4
Temperature-sensing riboceptors	4
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases	4
Ordering events in a developing genetic code	4
Rna analysis of the regulation of expression and alternative splicing in polycystic ovarian syndrome	4
Circular RNA Pde4dip regulates myogenesis by interacting with Zfp143 mRNA: a novel regulatory axis	4
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	4
Pre-mRNA splicing-associated diseases and therapies	4
EIF4A3-induced circFAT1 promotes high glucose-induced podocyte damage via miR-30e-5p/SOX4 axis	4
Optimizing protocols for microRNA profiling of infant and toddler stool	3
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	3
Impact of Gemin5 in protein synthesis: phosphoresidues of the dimerization domain regulate ribosome binding	3
Evaluating Malat1 -derived 3’end sequences for functional transgene expression in human cells using synthetic mRNA delivery	3
Evolution of the RNA alternative decay cis element into a high-affinity target for the immunomodulatory protein Roquin	3
Therapeutic potential of natural antisense transcripts and various mechanisms involved for clinical applications and disease prevention	3
Identification of proteins interacting with the N-terminal half of endoribonuclease RNase E in Escherichia coli	3
In silico unwinding of Caenorhabditis elegans microRNA duplexes to evaluate thermodynamic end stabilities improves predictions of microRNA strand selecti	3
RNA modification-mediated translational control in immune cells	3
Circular RNAs in non-alcoholic fatty liver disease: Functions and clinical significance	3
Research progress of circRNA in malignant tumour metabolic reprogramming	3
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	3
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	3
Diverse RNAs in human umbilical cord-derived exosomes and their therapeutic potential	3
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	3
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	3
AI foundation models for RNA biology	3
Advanced deep learning strategies in nanopore RNA sequencing	3
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	3
Extracellular vesicle-derived MicroRNAs as potential therapies for spinal cord and peripheral nerve injuries	3
Multipurpose RNA maturation factors dysregulate multiple mRNA processing steps simultaneously and provide new therapeutic opportunities	3
The catalytic activity of methyltransferase METTL15 is dispensable for its role in mitochondrial ribosome biogenesis	3
An orthology-based methodology as a complementary approach to retrieve evolutionarily conserved A-to-I RNA editing sites	3
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	3
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	3
Systematic mapping of small nucleolar RNA interactions in human cells	3
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	3
Hybrid-seq deciphers the complex transcriptional profile of the human BRCA1 DNA repair associated gene	3
Developing the risk prediction model (ProlncSig) from lipoxygenase pathway-related lncRNAs for prognosis prediction in breast cancer	3
Extracellular RNA in oncogenesis, metastasis and drug resistance	3
Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg 2+ -ion catalysis	3
Emerging roles of long non-coding RNAs in osteoarthritis: from molecular mechanisms to therapeutic opportunities	3
The continuing discovery on the evidence for RNA editing in SARS-CoV-2	3
The RNA-binding activity of the drosophila Brat protein is necessary for viability and mRNA regulation	3
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	3
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	3