RNA Biology

Article	Citations
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	75
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	43
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	43
lncRNAs: key player in Aβ deposition	39
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	39
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	38
RNA therapeutics	37
Architectures and complex functions of tandem riboswitches	37
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	34
The secret life of RNA and lipids	33
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	31
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	30
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	28
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	28
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	27
Synthetic RNA biology	27
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	26
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	26
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	25
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	25
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	25
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	24
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	24
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	24
Mistranslating the genetic code with leucine in yeast and mammalian cells	23

An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	23
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	22
Biology and utilization of R2 retrotransposons	21
Correction	21
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	21
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	21
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	21
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	21
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	21
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	21
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	20
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	20
Decoding RNA–protein interactions using high-throughput methods	19
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	19
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	19
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	18
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	17
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	17
Abasic RNA: its formation and potential role in cellular stress response	17
Conversations at the crossroads of the Human RNome Project: a collaborative reflection by the RNome Early Career Researchers	16
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	16
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	15
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	15
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	15
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	15
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	15
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	15
Unraveling C-to-U RNA editing events from direct RNA sequencing	14
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	14
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	14
Why are G-quadruplexes good at preventing protein aggregation?	14
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Circular at the very beginning: on the initial genomes in the RNA world	14
Change of guards: ELAVL proteins switch miRNA export responsibility to regulate differentiation of PC12 cells	13
An elusive debate on the evidence for RNA editing in SARS-CoV-2	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
EIciRNAs in focus: current understanding and future perspectives	13
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	13
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	13
Cleavage sequence specificity of Nsp15	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	12
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	12
MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	12
Structural and computational studies of HIV-1 RNA	12
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	11

Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	11
Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
m6A modification of RNA in cervical cancer: role and clinical perspectives	11
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
Exploring RNA modifications in infectious non-coding circular RNAs	11
Role of circular RNAs in DNA repair	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	10
Identification and characterization of new structured RNA classes in plants	10
A scalable system for the fast production of RNA with homogeneous terminal ends	10
The role and function of lncRNA in ageing-associated liver diseases	10
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	10
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	10
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	10
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	9
mRNAs sequestered in stress granules recover nearly completely for translation	9
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Reading the SINEs – functionality in noncoding RNA ‘cheap genes’	9
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucle	9
PRKCE non-coding variants influence on transcription as well as translation of its gene	9
Investigating the role of RNA structures in transcriptional pausing using in vitro assays and in silico analyses	8
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
Correction	8
mRNA vaccine designs for optimal adjuvanticity and delivery	8
tRNA modifications: greasing the wheels of translation and beyond	8
Germ granule-mediated mRNA storage and translational control	8
Long non-coding RNA transcripts in crucian carp brain – annotation and expression patterns in anoxia and reoxygenation	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
Essential role of hsa-miR-203a-3p in type I interferons immune homeostasis during influenza and NDV infection	8
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	8
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	8
Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines	8
Dynamic shifts in isomiR profiles during parasite maturation of Fasciola hepatica	8
A transformer-based method for the cap analysis of gene expression and gene expression tag associated capping region prediction in RNA	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	8
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners	7
The androgen receptor messenger RNA: what do we know?	7
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	7
Crosstalk between RNA secondary and three-dimensional structure prediction: a comprehensive study	7
Snhg12 targets miR-199a-5p to regulate osteogenic differentiation of TDSCs via the Fzd4/Wnt/β-catenin pathway	7
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	7
Dual synthesis pathways of scaRNA28 via intronic processing of transformation/transcription domain-associated protein transcripts and a novel independent transcription unit	7
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	7
RNA G-quadruplex-protein interactions: from nuclear RNA processing to cytoplasmic stress response and neurodegeneration	7
RGG-motif protein Scd6 affects oxidative stress response by regulating cytosolic caTalase T1 (Ctt1)	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	7
NSUN2 as an emerging epigenetic regulator in cancer: from biomarker to therapeutic target	7
C-terminal tagging impairs AGO2 function	6
RNA folding and functions of RNA helicases in ribosome biogenesis	6
Direct and indirect effects of spliceosome disruption compromise gene regulation by nonsense-mediated mRNA decay	6
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	6
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	6
TBP facilitates RNA Polymerase I transcription following mitosis	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	6
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	6
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	6
Alternative cleavage and polyadenylation: key regulatory mechanisms in health and disease	6
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	6
Role of small intronic RNAs in the crosstalk between immune cells and β-cells during type 1 diabetes development	6
Differential translation elongation directs protein synthesis in response to acute glucose deprivation in yeast	6
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	6
Splice site proximity influences alternative exon definition	5
Maturation of small nucleolar RNAs: from production to function	5
The dark side of the ribosome life cycle	5
5PSeq Explorer: interactive analysis of co-translational mRNA decay and ribosome dynamics	5
Retrotransposon life cycle and its impacts on cellular responses	5
RNA-containing extracellular vesicles in infection	5
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	5
Identifying candidate structured RNAs in CRISPR operons	5
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	5
Translation elongation: measurements and applications	5
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	5

Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	5
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases	4
Ordering events in a developing genetic code	4
Pre-mRNA splicing-associated diseases and therapies	4
Rna analysis of the regulation of expression and alternative splicing in polycystic ovarian syndrome	4
Circular RNA Pde4dip regulates myogenesis by interacting with Zfp143 mRNA: a novel regulatory axis	4
Temperature-sensing riboceptors	4
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	4
Mitochondrial RNA maturation	4
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	4
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	4
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	4
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	4
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	4
Enhanced cleavage of genomic CCR5 using CasX2 Max	4
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migratoria	4
Structure-driven function of plant lncRnas: conserved RNA architectures in transcriptional and Post-transcriptional regulation	4
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments	4
EIF4A3-induced circFAT1 promotes high glucose-induced podocyte damage via miR-30e-5p/SOX4 axis	4
Carrot and stick: how RNase R contributes to function and destruction of the translation machinery	4
Structures and functions of short argonautes	4
The hidden power of antisense long non-coding RNAs: a dive into a novel regulatory layer mediated by double-stranded RNA formation	3
Targeting RNA-Binding proteins Roquin-1 and Regnase-1 could enhance CAR-iPSC-derived macrophage immunotherapy for solid tumors: a perspective and challenges	3
Emerging roles of long non-coding RNAs in osteoarthritis: from molecular mechanisms to therapeutic opportunities	3
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	3
The catalytic activity of methyltransferase METTL15 is dispensable for its role in mitochondrial ribosome biogenesis	3
Hybrid-seq deciphers the complex transcriptional profile of the human BRCA1 DNA repair associated gene	3
The continuing discovery on the evidence for RNA editing in SARS-CoV-2	3
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	3
Diverse RNAs in human umbilical cord-derived exosomes and their therapeutic potential	3
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	3
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	3
A beneficial fungal root endophyte triggers systemic RNA silencing and DNA methylation of a host reporter gene	3
The A to I editing landscape in melanoma and its relation to clinical outcome	3
Impact of Gemin5 in protein synthesis: phosphoresidues of the dimerization domain regulate ribosome binding	3
Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg 2+ -ion catalysis	3
AI foundation models for RNA biology	3
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	3
An orthology-based methodology as a complementary approach to retrieve evolutionarily conserved A-to-I RNA editing sites	3
Research progress of circRNA in malignant tumour metabolic reprogramming	3
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	3
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	3
Optimizing protocols for microRNA profiling of infant and toddler stool	3
Therapeutic potential of natural antisense transcripts and various mechanisms involved for clinical applications and disease prevention	3
CSDE1 promotes passenger strand cleavage of miR-486	3
Extracellular vesicle-derived MicroRNAs as potential therapies for spinal cord and peripheral nerve injuries	3
In silico unwinding of Caenorhabditis elegans microRNA duplexes to evaluate thermodynamic end stabilities improves predictions of microRNA strand selecti	3
RNA modification-mediated translational control in immune cells	3
Extracellular RNA in oncogenesis, metastasis and drug resistance	3
Multipurpose RNA maturation factors dysregulate multiple mRNA processing steps simultaneously and provide new therapeutic opportunities	3
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	3
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	3
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	3
Systematic mapping of small nucleolar RNA interactions in human cells	3
Circular RNAs in non-alcoholic fatty liver disease: Functions and clinical significance	3