IEEE-ACM Transactions on Computational Biology and Bioinformatics

Papers
(The H4-Index of IEEE-ACM Transactions on Computational Biology and Bioinformatics is 40. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-06-01 to 2026-06-01.)
ArticleCitations
Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation141
Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics108
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction106
Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology99
ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites94
Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks83
Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations82
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means82
An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation81
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network81
IPP: An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies78
An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking77
Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement66
Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE66
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling60
VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease Detection58
Modality-DTA: Multimodality Fusion Strategy for Drug–Target Affinity Prediction57
Fine-Grained Lesion Classification Framework for Early Auxiliary Diagnosis56
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction55
PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites55
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions54
A Multi-Task Deep Feature Selection Method for Brain Imaging Genetics52
Improving Biomedical Question Answering by Data Augmentation and Model Weighting52
RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association51
A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions51
State Observer Design of Coupled Genetic Regulatory Networks With Reaction-Diffusion Terms via Time-Space Sampled-Data Communications47
Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning47
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images46
Robust and Privacy-Preserving Decentralized Deep Federated Learning Training: Focusing on Digital Healthcare Applications46
Minimum Functional Length Analysis of K-Mer Based on BPNN44
An Approach of Epistasis Detection Using Integer Linear Programming Optimizing Bayesian Network44
Automated Spot Counting in Microbiology43
SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction43
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction43
Deep Learning in Gene Regulatory Network Inference: A Survey42
Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions42
Subgroup Identification Using Virtual Twins for Human Microbiome Studies42
Spatial Stochastic Model of the Pre-B Cell Receptor41
WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites41
MEDA Based Biochips: Detection, Prevention and Rectification Techniques for Cyberphysical Attacks40
TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide RNA Cleavage Efficiency40
CASL: Capturing Activity Semantics Through Location Information for Enhanced Activity Recognition40
Transfer Learning Based Lightweight Ensemble Model for Imbalanced Breast Cancer Classification40
Blockchain-Based Data Access Security Solutions for Medical Wearables40
Morphological Rule-Constrained Object Detection of Key Structures in Infant Fundus Image40
DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction Prediction40
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