IEEE-ACM Transactions on Computational Biology and Bioinformatics

Papers
(The H4-Index of IEEE-ACM Transactions on Computational Biology and Bioinformatics is 40. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-06-01 to 2026-06-01.)
ArticleCitations
Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation141
Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics108
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction106
Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology99
ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites94
Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks83
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means82
Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations82
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network81
An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation81
IPP: An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies78
An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking77
Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE66
Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement66
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling60
VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease Detection58
Modality-DTA: Multimodality Fusion Strategy for Drug–Target Affinity Prediction57
Fine-Grained Lesion Classification Framework for Early Auxiliary Diagnosis56
PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites55
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction55
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions54
Improving Biomedical Question Answering by Data Augmentation and Model Weighting52
A Multi-Task Deep Feature Selection Method for Brain Imaging Genetics52
RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association51
A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions51
Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning47
State Observer Design of Coupled Genetic Regulatory Networks With Reaction-Diffusion Terms via Time-Space Sampled-Data Communications47
Robust and Privacy-Preserving Decentralized Deep Federated Learning Training: Focusing on Digital Healthcare Applications46
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images46
Minimum Functional Length Analysis of K-Mer Based on BPNN44
An Approach of Epistasis Detection Using Integer Linear Programming Optimizing Bayesian Network44
SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction43
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction43
Automated Spot Counting in Microbiology43
Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions42
Subgroup Identification Using Virtual Twins for Human Microbiome Studies42
Deep Learning in Gene Regulatory Network Inference: A Survey42
WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites41
Spatial Stochastic Model of the Pre-B Cell Receptor41
Morphological Rule-Constrained Object Detection of Key Structures in Infant Fundus Image40
DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction Prediction40
MEDA Based Biochips: Detection, Prevention and Rectification Techniques for Cyberphysical Attacks40
TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide RNA Cleavage Efficiency40
CASL: Capturing Activity Semantics Through Location Information for Enhanced Activity Recognition40
Transfer Learning Based Lightweight Ensemble Model for Imbalanced Breast Cancer Classification40
Blockchain-Based Data Access Security Solutions for Medical Wearables40
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