OOIR: Observatory of International Research

Papers

(The H4-Index of IEEE-ACM Transactions on Computational Biology and Bioinformatics is 42. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation	543
POPBic: Pathway-Based Order Preserving Biclustering Algorithm Towards the Analysis of Gene Expression Data	152
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network	126
Row and Column Structure-Based Biclustering for Gene Expression Data	107
Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation	87
Data-Driven and Knowledge-Based Algorithms for Gene Network Reconstruction on High-Dimensional Data	83
Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks	79
An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation	76
Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology	73
IPP: An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies	72
VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease Detection	71
The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behçet's Disease	69
Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics	69
Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE	66
Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps	65
ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites	63
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means	62
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs	61
An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking	61
Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations	57
Predicting Drug-Drug Interactions Based on Integrated Similarity and Semi-Supervised Learning	57
Modality-DTA: Multimodality Fusion Strategy for Drug–Target Affinity Prediction	56
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling	55
Seq-BEL: Sequence-Based Ensemble Learning for Predicting Virus-Human Protein-Protein Interaction	54
Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement	53

Higher-Order Proximity-Based MiRNA-Disease Associations Prediction	52
Subgroup Identification Using Virtual Twins for Human Microbiome Studies	50
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction	50
Fine-Grained Lesion Classification Framework for Early Auxiliary Diagnosis	49
Spatial Stochastic Model of the Pre-B Cell Receptor	49
PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites	49
A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions	47
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction	47
Deep Learning in Gene Regulatory Network Inference: A Survey	45
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images	45
Improving Biomedical Question Answering by Data Augmentation and Model Weighting	44
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction	44
Local R-Symmetry Co-Occurrence: Characterising Leaf Image Patterns for Identifying Cultivars	44
Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions	44
Evaluation of Existing Methods for High-Order Epistasis Detection	43
Group Sparse Joint Non-Negative Matrix Factorization on Orthogonal Subspace for Multi-Modal Imaging Genetics Data Analysis	42
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions	42