Limnology and Oceanography-Methods

Article	Citations
Extending monitoring with sediment archive approaches: Comparison of biomonitoring, metabarcoding, and biomarkers to assess past phytoplankton dynamics	54
Issue Information	47
A RUpture‐Based detection method for the Active mesopeLagIc Zone (RUBALIZ): A crucial step toward rigorous carbon budget assessments	42
Enhancing sampling of dissolved N2O in aquatic systems: Field‐deployable automated gas bag collection system	37
The determination of dimethyl sulfoxide in natural waters using electrochemical reduction	34
A membrane inlet laser spectrometer for in situ measurement of triple water isotopologues	30
Aquatic particulate absorption coefficient combining extraction and bleaching optimized for inland waters	25
A simple and rapid method for measuring total free sulfides in marine sediments	24
DeepBryo : A web app for AI ‐assisted morphometric characterization of cheilostome bryozoans	21
Pressurized plankton observatory offers a new window into deep‐sea larval behavior	17
Accurate estimation of photosynthetic available radiation from multispectral downwelling irradiance profiles	16
Demonstration, validation, and application of hyperspectral microscopy for the collection of cyanobacterial spectral signatures	16
Will various interpretation strategies of the same ultrahigh‐resolution mass spectrometry data tell different biogeochemical stories? A first assessment based on natural aquatic dissolved organic matt	14
Modular shadowgraph imaging for zooplankton ecological studies in diverse field and mesocosm settings	13
Hit or miss? Impact of time series resolution on resolving phytoplankton dynamics at hourly, weekly, and satellite remote sensing frequencies	13
Issue Information	12
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Novel device to collect deep‐sea porewater in situ: A focus on benthic carbonate chemistry	12
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Schrödinger's fish: Examining the robotic observer effect on pelagic animals	10
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Simultaneous preconcentration of 9Be and cosmogenic 10Be for determination of the 10Be/9Be ratio in (coastal) se	10
MARS: Programmable multipurpose auto‐release system for aquatic observations	10
Prediction of red tide outbreaks in inter‐connected coastal environments using time‐series hyperspectral data and transformer‐based graph convolution network	10

Preparation and quality control of in‐house reference materials for marine dissolved inorganic carbon and total alkalinity measurements	10
Assessing the impacts of anthropogenic sounds on early stages of benthic invertebrates: The “Larvosonic system”	9
At‐sea intercomparison of a membrane‐based pCO2 sensor and a traditional showerhead equilibrator system on a Ship‐of‐Opportunity	9
Evaluation of a modified sequential P extraction protocol: Quantification of Fe(II)‐P as a separate phase in seven different freshwater sediments	9
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Interpreting biogeochemical processes through the relationship between total alkalinity and dissolved inorganic carbon: Theoretical basis and limitations	8
Assessment of the influence of benzalkonium chloride addition on radiocarbon analysis of dissolved inorganic carbon	8
Red, green, blue color indices as proxy for Symbiodiniaceae cell density and chlorophyll content during coral bleaching	8
Issue Information	8
phytoclass: A pigment‐based chemotaxonomic method to determine the biomass of phytoplankton classes	8
Using environmental DNA to detect Microseira wollei (Oscillatoriales), a benthic harmful algal bloom,	7
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Image analysis and benthic ecology: Proceedings to analyze in situ long‐term image series	7
Combining quadrat, rake, and echosounding to estimate submerged aquatic vegetation biomass at the ecosystem scale	7
Fast responses, rich insights: Optimizing experimental stream studies using periphyton for comprehensive environmental assessment	7
A new framework for estimating abundance of animals using a network of cameras	7
Lotic‐SIPCO2: Adaptation of an open‐source CO2 sensor system and examination of associated emission uncertainties across a range of stream sizes and land uses	7
TEOS10 compliant salinity and density equations for sound speed instruments	7
Use of metal oxide semiconductor sensors to measure methane in aquatic ecosystems in the presence of cross‐interfering compounds	7
From seasonal field study to surrogate modeling: Investigating the biomechanical dynamics of Elymus sp. in salt marshes	7
A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI)	6
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Quantifying uncertainty in Pareto estimates of global lake area	6
A simple method for the quantification of amidic bioavailable dissolved organic nitrogen in seawater	6
Comparison between fluorometry and microscopy‐based phytoplankton assessments in the Laurentian Great Lakes	6
The influence of dynamic resources and stable isotope incorporation rates on aquatic consumer trophic position estimation	6
Incubation assay metrics describe different aspects of dissolved carbon degradation	6
Quantifying temporal dynamics of greenhouse gas emissions in lake mesocosms: Deployment of a low‐cost measurement system	6
Quantitative and qualitative comparison of marine dissolved organic nitrogen recovery using solid phase extraction	6
Robust ocean color from drones: Viewing geometry, sky reflection removal, uncertainty analysis, and a survey of the Gulf Stream front	6
Machine learning approach to study microboring assemblage dynamics in two living massive coral genera	6
Multiple sampling methods to develop indices of mid‐trophic levels abundance in open ocean ecosystems	5
Quantifying invasion dynamics: Quantitative polymerase chain reaction vs. droplet digital polymerase chain reaction in monitoring the alien invasive bloody‐red shrimp Hemimysis anomala and its	5
An in situ benthic chamber system for improved temporal and spatial resolution measurement of sediment oxygen demand	5
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Uncertainty in aquatic greenhouse gas flux estimates arises from subjective processing of floating chamber time series	5
Studying bioluminescence flashes with the ANTARES deep‐sea neutrino telescope	5
A novel fluoro‐electrochemical technique for classifying diverse marine nanophytoplankton	5
Evaluation of preservation protocols for oxygen‐sensitive minerals within laminated aquatic sediments	5
A benthic mesocosm system for long‐term multi‐factorial experiments applying predicted warming and realistic microplastic pollution scenarios	5
On the use of high‐density polyethylene bottles for long‐term storage of total alkalinity samples	5
A lightweight clear liquid optical chamber baited remote underwater video system for monitoring fish in turbid coastal wetlands	5
Spectrophotometric analysis of theCO2system in aqueous solutions: A freshwater example from the Snake River, Idaho,USA	4
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Design and optimization of wireless in‐situ sensor coupled with gas–water equilibrators for continuous pCO2 measurement in aquatic environments	4
Characterizing the response time of unpumped oxygen optodes for profiling applications	4
Standard metrics for characterizing episodic salinization in freshwater systems	4
A computer vision‐based approach for estimating carbon fluxes from sinking particles in the ocean	4
The Ellrott grab: A small, lightweight sediment sampler for collecting undisturbed sandy sediments	4

Comparison of advanced methodologies for diatom identification within dynamic coastal communities	4
Beyond transfer learning: Leveraging ancillary images in automated classification of plankton	4
Embedding a multichannel ion‐sensitive field‐effect transistor‐pH sensor array in marine sediments: a new approach for continuous in situ pH monitoring	4
Estimation of gas exchange coefficients from observations on the Yenisei River, Russia	4
Comparison of two multiple plankton samplers: MOCNESS and Multinet Mammoth	4
Sampling effort to characterize estuarine macroinfaunal communities in patchy habitats	4
An approach for merging colored dissolved organic matter absorption measurements from complementary benchtop spectrometers	4
Refining techniques for high‐frequency monitoring of chlorophyll a fluorescence in estuarine systems	4
A simple and low‐cost open dynamic chamber for the versatile determination of methane emissions from aquatic surfaces	4
pamfit : A new R package for spatially resolved analysis of Imaging PAM photosynthesis–irradiance light curve parameters	4
A video monitoring and computational system for estimating migratory juvenile fish abundance in river systems	4
A fast and efficient tool for the structural characterization of marine dissolved organic matter: Nonuniform sampling 2D COSY NMR	4
Automated monitoring of early life‐stage development in Atlantic cod (Gadus morhua) embryos exposed to a reference toxicant	4
Otoliths, bones, teeth, and more: Development of a new polishing wheel for calcified structures	4
Assessing the applicability of sequential eye lens stable isotope analysis for reconstructing dietary histories in amphibians	4
Particle size dependence on current velocity	3
A novel method to sample individual marine snow particles for downstream molecular analyses	3
Issue Information	3
Extracting proteins from microscopic biominerals: A reproducible method development using oyster larvae	3
A method for successful collection of multicores and gravity cores from Antarctic subglacial lakes	3
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Size matters: Perspective and angle‐correction improves accuracy in noninvasive image‐based body size measurements	3
Effects of very short‐term formalin fixation on coral carbon and nitrogen stable isotopes, total lipids, and chlorophyll a	3
Issue Information	3
A correction model for quenching effects on chlorophyll a fluorescence measurements in lakes	3
Issue Information	3
Underwater Zooplankton Enhancement Light Array (UZELA): A technology solution to enhance zooplankton abundance and coral feeding in bleached and non‐bleached corals	3
Issue Information	3
Predicting lake bathymetry from the topography of the surrounding terrain using deep learning	3
Updated temperature correction for computing seawater nitrate with in situ ultraviolet spectrophotometer and submersible ultraviolet nitrate analyzer nitrate sensors	3
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Dissolved organic phosphorus molecular weight fractionation and apparent bioavailability quantified via coupled sequential ultrafiltration and enzyme hydrolysis	3
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Novel method for determining of 137 Cs in seawater using liquid scintill	3
Impacts of counting protocols for light microscopy on estimates of biodiversity and algal density of phytoplankton	3
Simple and affordable colorimetric sensing strips for quantitative determination of total manganese in porewater samples	3
Autonomous, high‐frequency and long‐term monitoring of substrate temperature in rocky intertidal zones	3
Small microplastic particles in Lake Superior: A preliminary study coupling Nile red staining, flow cytometry and pyrolysis gas chromatography–mass spectrometry	3
Precise determination of dolomite content in marine sediments	3
Sample preservation methods for nitrous oxide concentration and isotope ratio measurements in aquatic environments	3
Interactive software for processing, compilation, and interpretation of seafloor heat‐flow data, including analysis of measurement uncertainties	3
Digitizing lake bathymetric data using ImageJ	3
Estimating ethanol correction factors for δ13C and δ15N isotopic signatures of freshwater zooplankton from multiple lakes	3
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Development and laboratory assessment of a subsea particle image velocimetry system for bubble and turbulence measurements in marine seeps	2
High‐resolution measurements of the epipelagic and mesopelagic ocean by a profiling vehicle equipped with environmental sensors and a broadband echosounder	2
Resolving phytoplankton pigments from spectral images using convolutional neural networks	2
Acidification‐driven molecular fractionation of dissolved organic matter during direct analysis of freshwater using UPLC‐Orbitrap MS	2
Predicting potential Arctic kelp distribution and lower‐depth biomass from seafloor irradiance	2
Lab on a Secchi disk: A prototype open‐source profiling package for low‐cost monitoring in aquatic environments	2
Evaluating the eDNA spatial signal in natural populations and its application for the monitoring of the threatened Harttiella (Siluriformes, Loricariidae)	2
Fitting metabolic models to dissolved oxygen data: The estuarine Bayesian single‐station estimation method	2
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An aquatic mesocosm array to regulate spatial and temporal water temperature variability	2
DISCO: A low‐cost device‐instrumented Secchi disk for water clarity observations	2
A novel in situ benthic photorespirometer for estimating photosynthesis rates of benthic primary producers	2
Increasing the scope of the resazurin‐resorufin smart tracer system in hydrologic and biogeochemical sciences: The effects of storage duration and temperature on preservation	2
A low‐cost, automated, and adaptable system for field‐based measurement of pCO 2	2
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Deriving bottom sediment grain size in tidal channels using remote sensing and numerical modeling	2
Meiofauna investigation and taxonomic identification through imaging—a game of compromise	2
Multivariate statistical “unmixing” of Indian and Pacific Ocean sediment provenance	2
Improved COI taxonomic assignment workflow enhances detection of invertebrates in environmental DNA	2
A closed‐loop system for the semi‐continuous measurement of biogenic volatile organic compounds from marine organisms	2
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High‐throughput determination of total lipids from North Pacific marine fishes via the sulfo‐phospho‐vanillin microplate assay	2
Continuous determination of dissolved inorganic carbon fluxes from pumping suspension feeders	2
Comparing methods for measuring egestion in aquatic animals	2
Correction to “Underwater Zooplankton Enhancement Light Array ( UZELA ): A technology solution to enhance zooplankton abundance and coral feeding in	2
Methodology for the definition of the mixing zones of punctual discharges in coastal waters	2
Flaws in the methodologies for organic carbon analysis in seagrass blue carbon soils	2
Investigating the impacts of solid phase extraction on dissolved organic matter optical signatures and the pairing with high‐resolution mass spectrometry data across a freshwater stream network	2
Bias‐corrected high‐resolution vertical nitrate profiles from the CTD rosette‐mounted submersible ultraviolet nitrate analyzer	2
Simulating climate change scenarios established by the Intergovernmental Panel on Climate Change in aquatic mesocosms	2
Lignin phenol quantification from machine learning‐assisted decomposition of liquid chromatography‐absorbance spectroscopy data	2
Quantifying pelagic primary production and respiration via an automated in situ incubation system	2
Three‐dimensional photogrammetry‐based monitoring to enhance site‐level carbonate budget assessments of coral reefs	2
Producing plankton classifiers that are robust to dataset shift	2
Reconstructing missing data by comparing interpolation techniques: Applications for long‐term water quality data	1
Classification of suspended particles in seawater using an in situ polarized light scattering prototype	1

Automated phytoplankton single‐cell counting from digital images with transfer learning for harmful algal bloom monitoring in the English Channel and North Sea	1
Individual movement modeling expands the power of migratory species observations: North Atlantic right whale case study	1
Using physics‐informed neural networks to quantify submarine groundwater discharge under high‐frequency tidal dynamics using heat as a tracer	1
Self‐diagnosis of model suitability for continuous measurements of stream‐dissolved organic carbon derived from in situ UV–visible spectroscopy	1
Identifying conditions associated with outliers produced by three different chlorophyll fluorometers: A comparison of instrumentation and development of correction formulae	1
A refined method for phosphite detection in freshwater ecosystems	1
Initial evaluation of high‐pressure ceramic nanofiltration for dissolved organic carbon isolation from surface waters across the land‐to‐ocean continuum	1
Chemical stabilization of glass microfiber type F filters for measuring particulate phosphorus using the extra high‐temperature dry combustion method	1
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Resolving acoustic azimuth using an accelerometer‐based underwater acoustic vector sensor	1
Lab‐based multispectral photography for approximating chlorophyll content in Zostera marina	1
Issue Information	1
The ZooScan and the ZooCAM zooplankton imaging systems are intercomparable: A benchmark on the Bay of Biscay zooplankton	1
Relationships between acoustic scattering layers and ocean stratification: An acoustic approach to estimate mixed layer depth	1
Small‐organelle‐enriched metagenomics: An improved method for environmental DNA‐based identification of marine plankton	1
A novel approach for in situ benthic habitat characterization	1
Cryptic biodiversity: A portfolio‐approach to coral reef fish surveys	1
Combining multibeam and single beam echosounders for quantifying gas bubble release from the seafloor	1
Quantification of dissolved metabolites in environmental samples through cation‐exchange solid‐phase extraction paired with liquid chromatography–mass spectrometry	1
Optimizing observational arrays for biogeochemistry in the tropical Pacific by estimating correlation lengths	1
Monitoring tides, currents, and waves along coastal habitats using the Mini Buoy	1
Phytoplankton primary productivity: A dual‐incubation approach for direct comparison of photosystem II photosynthetic flux (JVPII) and 14C‐fixation experiments	1
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GelCam: Visualizing sinking particle flux via a polyacrylamide gel‐based sediment trap	1
Evaluation of the BenthoTorch using lake periphyton: A comparison of attached cyanobacterial biomass estimates	1
Real‐time quality assessment for Biogeochemical Argo radiometric profiles	1
Developing a hybrid model with multiview learning for acoustic classification of Atlantic herring schools	1
An automated modular heating solution for experimental flow‐through stream mesocosm systems	1
Underway measurement of cyanobacterial microcystins using a surface plasmon resonance sensor on an autonomous underwater vehicle	1
A staging system for Atlantic herring (Clupea harengus) larvae based on external morphology and skeletal development	1
A semi‐analytical Bayesian estimate retrieval algorithm for the inversion of remote‐sensing reflectance in optically deep and shallow waters	1
A simple, safe method for preserving dissolved methane in freshwater samples using benzalkonium chloride	1
Fractionation of ultrafine particles from marine sediment for organic geochemical measurement	1
Development of a moored radium in situ sampler to measure annual time series	1
Refining resolution settings for analysis of dissolved organic matter in varied natural environments by Fourier‐transform ion cyclotron resonance mass spectrometry	1