OOIR: Observatory of International Research

Papers

(The median citation count of Neuroinformatics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types	141
Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space	75
RS-FetMRI: a MATLAB-SPM Based Tool for Pre-processing Fetal Resting-State fMRI Data	37
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS	33
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM	32
Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data	30
High-throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures	29
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients	27
Extreme Learning Machine Design for Dealing with Unrepresentative Features	27
Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem	25
Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines	25
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas	23
Dementia in Convolutional Neural Networks: Using Deep Learning Models to Simulate Neurodegeneration of the Visual System	22
Big Brain Data Initiatives in Universiti Sains Malaysia: Data Stewardship to Data Repository and Data Sharing	20
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons	19
A Computational Neural Model for Mapping Degenerate Neural Architectures	17
CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations	15
Classification of Contrasting Discrete Emotional States Indicated by EEG Based Graph Theoretical Network Measures	15
Brain Age Prediction in Developing Childhood with Multimodal Magnetic Resonance Images	15
Assessing Computational Methods to Quantify Mother-Child Brain Synchrony in Naturalistic Settings Based on fNIRS Signals	14
A Graph-Based Nonlinear Dynamic Characterization of Motor Imagery Toward an Enhanced Hybrid BCI	14
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain	13
On the Long-term Archiving of Research Data	12
Population-Average Brain Templates and Application to Automated Voxel-Wise Analysis Pipelines for Cynomolgus Macaque	12
Federated Analysis of Neuroimaging Data: A Review of the Field	11

Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester	11
Editorial: What the New White House Rules on Equitable Access Mean for the Neurosciences	10
Assessing the Repeatability of Multi-Frequency Multi-Layer Brain Network Topologies Across Alternative Researcher’s Choice Paths	9
Single Neuron Modeling Identifies Potassium Channel Modulation as Potential Target for Repetitive Head Impacts	9
Complexity of Brain Dynamics as a Correlate of Consciousness in Anaesthetized Monkeys	8
Editorial: Is Now the Time for Foundational Theory of Brain Connectivity?	8
Review Paper: Reporting Practices for Task fMRI Studies	8
De-Identification Technique with Facial Deformation in Head CT Images	8
Learning Low-Dimensional Semantics for Music and Language via Multi-Subject fMRI	8
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks	8
Polymer Physics-Based Classification of Neurons	8
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data	8
A Method for In-Vivo Mapping of Axonal Diameter Distributions in the Human Brain Using Diffusion-Based Axonal Spectrum Imaging (AxSI)	8
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience	7
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI	7
Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System	7
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations	7
Modelling Cortical Laminar Connectivity in the Macaque Brain	7
Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke	7
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience	7
Cortical Representation of Touch in Silico	7
Real-time and Recursive Estimators for Functional MRI Quality Assessment	6
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis	6
Altered Connectedness of the Brain Chronnectome During the Progression to Alzheimer’s Disease	6
Analysis of Network Models with Neuron-Astrocyte Interactions	6
Correction to: Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data	6
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains	6
Super-resolution Segmentation Network for Reconstruction of Packed Neurites	6
Correction to: Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester	6
DTI Atlases Evaluations	6
nGauge: Integrated and Extensible Neuron Morphology Analysis in Python	6
Correction to: High‑throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures	6
How Machine Learning is Powering Neuroimaging to Improve Brain Health	5
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data	5
Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives	5
Controlling for Spurious Nonlinear Dependence in Connectivity Analyses	5
ABLE: Automated Brain Lines Extraction Based on Laplacian Surface Collapse	5
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes	5
Correction to: Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy	5
Neuroimaging-ITM: A Text Mining Pipeline Combining Deep Adversarial Learning with Interaction Based Topic Modeling for Enabling the FAIR Neuroimaging Study	5
Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective	5