OOIR: Observatory of International Research

Papers

(The median citation count of Neuroinformatics is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations	57
Classification of Contrasting Discrete Emotional States Indicated by EEG Based Graph Theoretical Network Measures	51
MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity	32
Review of Riemannian Distances and Divergences, Applied to SSVEP-based BCI	30
Deep Learning Model for the Automated Detection and Histopathological Prediction of Meningioma	29
Cross-validated Adaboost Classification of Emotion Regulation Strategies Identified by Spectral Coherence in Resting-State	28
An Optimized Mouse Brain Atlas for Automated Mapping and Quantification of Neuronal Activity Using iDISCO+ and Light Sheet Fluorescence Microscopy	27
3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials	27
DeepNeuro: an open-source deep learning toolbox for neuroimaging	24
GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population	23
Automated Brain Masking of Fetal Functional MRI with Open Data	21
Evolution of Human Brain Atlases in Terms of Content, Applications, Functionality, and Availability	21
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility	21
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data	20
A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination	20
TE-HI-GCN: An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis	19
Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer’s Disease	18
DREAM	17
Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives	15
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain	15
Colocalization Colormap –an ImageJ Plugin for the Quantification and Visualization of Colocalized Signals	15
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes	12
Cross-Sectional Volumes and Trajectories of the Human Brain, Gray Matter, White Matter and Cerebrospinal Fluid in 9473 Typically Aging Adults	12
Deep Learning‐based Classification of Resting‐state fMRI Independent‐component Analysis	12
Improved Segmentation of the Intracranial and Ventricular Volumes in Populations with Cerebrovascular Lesions and Atrophy Using 3D CNNs	12

Addressing Pitfalls in Phase-Amplitude Coupling Analysis with an Extended Modulation Index Toolbox	12
DeepDicomSort: An Automatic Sorting Algorithm for Brain Magnetic Resonance Imaging Data	12
Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis	11
An MRI-Based, Data-Driven Model of Cortical Laminar Connectivity	11
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography	11
SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance	11
How Machine Learning is Powering Neuroimaging to Improve Brain Health	11
Multimodal Autoencoder Predicts fNIRS Resting State From EEG Signals	11
FEMfuns: A Volume Conduction Modeling Pipeline that Includes Resistive, Capacitive or Dispersive Tissue and Electrodes	10
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains	10
Federated Analysis of Neuroimaging Data: A Review of the Field	10
DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks	10
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains	9
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis	9
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)	8
Human Brain Atlases in Stroke Management	8
RippleNet: a Recurrent Neural Network for Sharp Wave Ripple (SPW-R) Detection	8
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge	8
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience	7
Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery	7
Automated Head Tissue Modelling Based on Structural Magnetic Resonance Images for Electroencephalographic Source Reconstruction	7
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS	7
Multiple Functional Brain Networks Related to Pain Perception Revealed by fMRI	7
RT-NET: real-time reconstruction of neural activity using high-density electroencephalography	7
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data	7
MEA-ToolBox: an Open Source Toolbox for Standardized Analysis of Multi-Electrode Array Data	7
Controlling for Spurious Nonlinear Dependence in Connectivity Analyses	6
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies	6
3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines	6
supFunSim: Spatial Filtering Toolbox for EEG	6
Generating Longitudinal Atrophy Evaluation Datasets on Brain Magnetic Resonance Images Using Convolutional Neural Networks and Segmentation Priors	6
A Comparative Analysis of MRI Automated Segmentation of Subcortical Brain Volumes in a Large Dataset of Elderly Subjects	5
A Graph-Based Nonlinear Dynamic Characterization of Motor Imagery Toward an Enhanced Hybrid BCI	5
The C-BIG Repository: an Institution-Level Open Science Platform	5
Assessing Computational Methods to Quantify Mother-Child Brain Synchrony in Naturalistic Settings Based on fNIRS Signals	5
Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification	5
BVAR-Connect: A Variational Bayes Approach to Multi-Subject Vector Autoregressive Models for Inference on Brain Connectivity Networks	5
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks	5
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas	5
Super-resolution Segmentation Network for Reconstruction of Packed Neurites	4
GeodesicSlicer: a Slicer Toolbox for Targeting Brain Stimulation	4
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM	4
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI	4
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability	4
Predicting Synaptic Connectivity for Large-Scale Microcircuit Simulations Using Snudda	4
Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI	4
Improving Covariance Matrices Derived from Tiny Training Datasets for the Classification of Event-Related Potentials with Linear Discriminant Analysis	4
Fast Estimation of L1-Regularized Linear Models in the Mass-Univariate Setting	4
Prediction of a Cell-Class-Specific Mouse Mesoconnectome Using Gene Expression Data	4
Cortical Representation of Touch in Silico	4

Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke	4
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons	4
Transfer, Collection and Organisation of Electrophysiological and Imaging Data for Multicentre Studies	4
Analysis of Network Models with Neuron-Astrocyte Interactions	4
Modelling Cortical Laminar Connectivity in the Macaque Brain	4
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility	4
Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System	3
Correction to: Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy	3
Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)	3
The Location Reliability of the Resting-State fMRI FC of Emotional Regions Towards rTMS Therapy	3
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study	3
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience	3
Complexity of Brain Dynamics as a Correlate of Consciousness in Anaesthetized Monkeys	3
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis	3
Altered Connectedness of the Brain Chronnectome During the Progression to Alzheimer’s Disease	3
Tractography Processing with the Sparse Closest Point Transform	3
Shamo: A Tool for Electromagnetic Modeling, Simulation and Sensitivity Analysis of the Head	3
Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data	3
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling	3
Integrating Multimodal and Longitudinal Neuroimaging Data with Multi-Source Network Representation Learning	3
nGauge: Integrated and Extensible Neuron Morphology Analysis in Python	3
NEURO-LEARN: a Solution for Collaborative Pattern Analysis of Neuroimaging Data	3