Molecular & Cellular Proteomics

Article	Citations
Structural Premise of Selective Deubiquitinase USP30 Inhibition by Small-Molecule Benzosulfonamides	315
Clinical Proteomics for Solid Organ Tissues	257
NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing	174
Spatial Proteomics Reveals Distinct Protein Patterns in Cortical Migration Disorders Caused by LIN28A Overexpression and WNT Activation	128
Exploring the Early Molecular Pathogenesis of Osteoarthritis Using Differential Network Analysis of Human Synovial Fluid	127
Immunopeptidomic Analyses of Colorectal Cancers With and Without Microsatellite Instability	116
Temporal Wheat Proteome Remodeling by Deoxynivalenol Reveals Novel Detoxification Signatures and Strategies Across Cultivars	110
Prenylated PALM2 Promotes the Migration of Esophageal Squamous Cell Carcinoma Cells Through Activating Ezrin	103
Proteomic Portrait of Degranulation Program in Human Circulating Neutrophils Upon Multi-Inflammatory and Infectious Activation	99
Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p	85
PROTEOMIC CHANGES TO THE ANTERIOR CEREBRAL ARTERY IN ALZHEIMER’S DISEASE	82
Table of Contents	78
Easier, More Robust, and Faster Low-flow Quantitative Proteomics Approach	72
CREB-Regulated Transcriptional Coactivator 2 Proteome Landscape is Modulated by SREBF1	71
A Multipathway Phosphopeptide Standard for Rapid Phosphoproteomics Assay Development	70
Sequencing of Polyclonal Antibodies by Integrating Intact Mass, Middle–Down, and De Novo Bottom–Up Mass Spectrometry	58
Special Issue: Celebrating the Career of Donald F. Hunt	58
Quantitative Proteomic Analysis Reveals Functional Alterations of the Peripheral Immune System in Colorectal Cancer	56
mTORC2 Regulates Non-homologous End Joining Through Modulating the Temporal Dynamics of 53BP1	52
Region- and Cell-type–Resolved Multiomic Atlas of the Heart	49
PS.49 From spatial proteomics to spatial multiomics: leveraging spammR to integrate, analyze, and interpret mass spectrometry imaging data	47
PS.67 Combined bulk and single-cell proteomics identifies novel protein dysfunctions in Alzheimer’s disease	47
PS.118 Identification of KRAS PROTACs Targeting GTP-loaded Alleles	46
PS.46 Algorithm-Powered Mass Spectrometry for Pathogen Identification	44
Discovery Proteomics Analysis Determines That Driver Oncogenes Suppress Antiviral Defense Pathways Through Reduction in Interferon-β Autocrine Stimulation	43

Employing Expression-Matched Controls Enables High-Confidence Proximity-Based Interactome Classification	43
Proteomic Characterization of Acute Myeloid Leukemia for Precision Medicine	43
CellEKT: A Robust Chemical Proteomics Workflow to Profile Cellular Target Engagement of Kinase Inhibitors	43
LC-SRM Combined With Machine Learning Enables Fast Identification and Quantification of Bacterial Pathogens in Urinary Tract Infections	43
In-Cell Chemical Crosslinking Identifies Hotspots for SQSTM-1/p62-IκBα Interaction That Underscore a Critical Role of p62 in Limiting NF-κB Activation Through IκBα Stabilization	42
A Methanolic Urea-Enhanced Protein Extraction Enabling the Largest Bacterial Phosphorylation Resource	41
Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression	41
Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model	41
Cerebrospinal Fluid Protein Markers Indicate Neuro-Damage in SARS-CoV-2-Infected Nonhuman Primates	39
Improved Mass Spectrometry–Based Methods Reveal Abundant Propionylation and Tissue-Specific Histone Propionylation Profiles	36
Degradomic Identification of Membrane Type 1-Matrix Metalloproteinase as an ADAMTS9 and ADAMTS20 Substrate	36
Proximity Labeling and SILAC-Based Proteomic Approach Identifies Proteins at the Interface of Homotypic and Heterotypic Cancer Cell Interactions	35
WITHDRAWN	35
A Proteomic Approach Identifies Isoform-Specific and Nucleotide-Dependent RAS Interactions	35
HEXB Drives Raised Paucimannosylation in Colorectal Cancer and Stratifies Patient Risk	35
High-throughput subcellular proteomics reveals phospho-signaling dynamics	34
PRM-LIVE Accelerates Target Class-based Selectivity Profiling of Small Molecule Inhibitors	34
Developing Cross-linking Mass Spectrometry to Define Protein Interaction Landscapes	34
The rise of molecular glues and bifunctional compounds	33
In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology	33
Toward Comprehensive, Single-molecule Proteomics: Protein Identification by Shortepitope Mapping	33
Proteogenomic analyses of CRISPR inhibited expression of a panel genes associated with Alzheimer's disease and related dementias in iPSC-derived neurons using a fully automated workflow	32
PS.60 Proteomic translation and degradation screen of HECT E3 ligases reveals functional redundancies and exclusivity in E3-substrate relationships	31
Back Cover	30
2.1 Protein degraders: New insights and twists of molecular mechanism and drug design	30
Filter-Aided Extracellular Vesicle Enrichment (FAEVEr) for Proteomics	29
Deciphering Stiffness-Driven Changes in Colorectal Cancer by Proteomics	29
Proteome Profiling of Cerebrospinal Fluid and Machine Learning Reveal Protein Classifiers of Two Forms of Alzheimer’s Disease Characterized by Increased or Not Altered Levels of Tau	29
Dynamic Proteomic Changes in Tumor and Immune Organs Reveal Systemic Immune Response to Tumor Development	29
Development of a Fit-For-Purpose Multi-Marker Panel for Early Diagnosis of Pancreatic Ductal Adenocarcinoma	29
Bridging the Gap From Proteomics Technology to Clinical Application: Highlights From the 68th Benzon Foundation Symposium	29
Recent Advances in Mass Spectrometry-Based Studies of Post-Translational Modifications in Alzheimer’s Disease	28
Proteomics, Transcriptomics, and Phosphoproteomics Reveal the Mechanism of Talaroconvolutin-A Suppressing Bladder Cancer via Blocking Cell Cycle and Triggering Ferroptosis	28
Proteins in Tumor-Derived Plasma Extracellular Vesicles Indicate Tumor Origin	28
Integrative Proteomics and N-Glycoproteomics Analyses of Rheumatoid Arthritis Synovium Reveal Immune-Associated Glycopeptides	27
Deep Learning Prediction Boosts Phosphoproteomics-Based Discoveries Through Improved Phosphopeptide Identification	27
The in vivo Interaction Landscape of Histones H3.1 and H3.3	26
Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification	26
A Peptidisc-Based Survey of the Plasma Membrane Proteome of a Mammalian Cell	26
Phosphoproteome Analysis Identifies a Synaptotagmin-1-Associated Complex Involved in Ischemic Neuron Injury	26
DIA-Based Phosphoproteomics Identifies Early Phosphorylation Events in Response to EGTA and Mannitol in Arabidopsis	25
Assessment of Kinome-Wide Activity Remodeling upon Picornavirus Infection	25
The Role of Clinical Glyco(proteo)mics in Precision Medicine	25
Multi-Omics Analysis Unveils Nsun5-Mediated Molecular Alterations in the Somatosensory Cortex and Its Impact on Pain Sensation	25
From Discovery to Delivery: A Rapid and Targeted Proteomics Workflow for Monitoring Chinese Hamster Ovary Biomanufacturing	25
Recent Advances in Mass Spectrometry-Based Protein Interactome Studies	25
Accurate MS-Based Diagnostic Amyloid Typing Using Endogenously Normalized Protein Intensities in Formalin-Fixed Paraffin-Embedded Tissue	25
In-Depth Analysis of miRNA Binding Sites Reveals the Complex Response of Uterine Epithelium to miR-26a-5p and miR-125b-5p During Early Pregnancy	25
Proteomic Identification of Autophagy Cargo Using Novel Tools in Combination with Quantitative Proteomics.	24
Multi-nanoparticle Workflow Enables Deep Plasma Proteomics at Scale, with Enhanced Precision, and Depths of Coverage	24

Mapping diverse proteome responses with intelligent mass spectrometry	24
PS.73 Parallel Accumulation Mobility Aligned Fragmentation Analysis Enables 1,000 Hz Speeds with 100% Ion Utilization for Fast and Sensitive Discovery Workflows	23
Highly multiplexed proteome-wide quantitation of functional residues enabled by a novel 11plex-AzidoTMT reagent	23
Automated workflows for DIA data using DIA-NN on the PaSER platform	23
Mass spectrometry and SomaScan technologies to detect a plasma copper proteome in two human populations	23
Highly multiplexed label-free imaging of tissue proteoforms using individual ion mass spectrometry	23
PS.89 Antitumor and Pro-apoptotic Effects of Chetomin in Human Melanoma	22
PS.59 Impaired CO2-mediated Cerebral Blood Flow Regulation in the Absence of Hb βC93A in a Murine Model	22
3.4 The Lysine L-Lactylation Pathway: Biochemistry, Epigenetics and Pathophysiology	22
MS.1 Using Quantitative Proteomics for Biodosimetry and the Assessment of Low Dose Radiation Exposure	22
Table of Contents	22
MS.6 Large-scale protein concentration profiling with MaxQuantAtlas	22
PS.9 Automated MagNet Enrichment Unlocks Deep and Cost-Effective LC-MS Plasma Proteomics	22
PS.21 Iodine monochloride as a probe of the proteome of the volatile odorant uptake pathway in insect olfaction	22
Enhanced In Situ Spatial Proteomics by Effective Combination of MALDI Imaging and LC-MS/MS	21
TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics	21
An Automated Workflow to Address Proteome Complexity and the Large Search Space Problem in Proteomics and HLA-I Immunopeptidomics	21
Cover	20
Prospective on Imaging Mass Spectrometry in Clinical Diagnostics	20
(Sialyl)Lewis Antigen Expression on Glycosphingolipids, N-, and O-Glycans in Colorectal Cancer Cell Lines is Linked to a Colon-Like Differentiation Program	20
Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2–Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation	20
The One Hour Human Proteome	20
Cover	20
Relative Quantification of Proteins in Formalin-Fixed Paraffin-Embedded Breast Cancer Tissue Using Multiplexed Mass Spectrometry Assays	20
Yellow Fever Blood Proteomics Study by Trapped Ion Mobility Mass Spectrometry	19
Three-dimensional feature matching improves the sensitivity of single-cell and spatial proteomics	19
Protein Kinase Signaling Networks Driven by Oncogenic Gq/11 in Uveal Melanoma Identified by Phosphoproteomic and Bioinformatic Analyses	19
Deciphering the highly complex cancer immunopeptidome	19
Mapping the Degradable Kinome: A Resource for Expedited Degrader Development	19
Back Cover	19
11th Asia Oceania Human Proteome Organization Congress Report	19
Computational challenges of identification and quantification algorithms in single-cell proteomic data.	19
PS.30 Unlocking next-generation insights in LC-MS based proteomics with a scalable and sustainable workflow strategy	18
4.9 The interface between metabolism and immunity within a virus microenvironment	18
Proteome-Wide Monitoring of Drug Action in Living Cells Using a Novel Label-Free Solvent-Based Shift Assay	18
Elucidating Fibroblast Growth Factor–Induced Kinome Dynamics Using Targeted Mass Spectrometry and Dynamic Modeling	18
Comparative Evaluation of Solid-phase and Membrane Mimetic Strategies in Membrane Proteome Coverage and Disease-State Analysis	18
pXg: Comprehensive Identification of Noncanonical MHC-I–Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads	18
PS.93 Profiling the Senescent Cell Surfaceome to Elucidate Senescence Biology and Identify Senotherapeutic Targets	18
PS.18 Expanded Coverage of Protein Post Translational Modifications Through Use of Complementary Proteases	18
Deep Learning Enhances Precision of Citrullination Identification in Human and Plant Tissue Proteomes	18
Properties, Origin, and Consistency of Truncated Proteoforms Across Top-Down Proteomic Studies	18
Mapping Hydrogen Migration Thresholds for Site-Specific HDX-MS	18
PS.64 An Oncogenic Virus Drives Dynamic Alterations to the Tumor-Infection Microenvironment	18
2.4 Defining Proteoform-Specific Interactions for Drug Targeting in a Native Cell Signalling Environment	18
3.6 Motif-Based Approaches for Analyzing Phosphoproteomic Mass Spectrometry Datasets Identify Signaling Dependencies in Cancers Lacking Known Oncogenic Drivers	18
Chemical Proteomics Reveals Nε-Fatty-Acylation of Septins by Rho Inactivation Domain (RID) of the Vibrio MARTX Toxin to Alter Septin Localization and Organization	18
Proteomics Data Imputation With a Deep Model That Learns From Many Datasets	18
Probing the sORF-Encoded Peptides of Deinococcus radiodurans in Response to Extreme Stress	18
Deciphering Spatial Protein–Protein Interactions in Brain Using Proximity Labeling	17
TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage	17
Whole Blood Proteome Dynamics Defines Predictive Diagnostic and Prognostic Signatures of Cryptococcal Infection	17
Combining Data Independent Acquisition With Spike-In SILAC (DIA-SiS) Improves Proteome Coverage and Quantification	17
Clinical Proteomics: A Promise Becoming Reality	17
Serendipity and the Slime Mold: A Visual Survey of High-Molecular-Weight Protein Assemblies Reveals the Structure of the Polyketide Synthase Pks16	17
SIRT3 Functions as an Eraser of Histone H3K9 Lactylation to Modulate Transcription for Inhibiting the Progression of Esophageal Cancer	17
A Time Point Proteomic Analysis Reveals Protein Dynamics of Plasmodium Oocysts	17
Improving the Depth and Reliability of Glycopeptide Identification Using Protein Prospector	17
Causal Inference and Annotation of Phosphoproteomics Data in Multiomics Cancer Studies	17
Generation of a Deep Mouse Brain Spectral Library for Transmembrane Proteome Profiling in Mental Disease Models	17
Proximity Labeling of the Tau Repeat Domain Enriches RNA-Binding Proteins That Are Altered in Alzheimer's Disease and Related Tauopathies	17
Application of stable isotope labelingbased quantitative PTM proteomics and interactomics in study of Arabidopsis cell signaling	16
Restrained Wnt Signaling Pathway by Enhanced EsGSK3β Activity Facilitates the Infection of Spiroplasma and Leads to Neuropathic Diseases in Crustaceans	16
PS.45 The dynamic TRPV2 ion channel proximity proteome reveals functional links of calcium flux with cellular adhesion factors NCAM and L1CAM in neurite outgrowth	16
WITHDRAWN	16
Large-Scale Plasma Proteome Epitome Profiling is an Efficient Tool for the Discovery of Cancer Biomarkers	16
Complexome profiling of mitochondrial oxidative phosphorylation knockout models.	16
Zscan4 as a Candidate Conveyor of Early Developmental Defects in O-GlcNAc Transferase Intellectual Disability	16
Cover	16
Tracking drug action at the cell surface and the secreted proteome	16
PS.2 Integrated Omics of Multiple Post-Translational Modifications Reveals Host Cellular Pathways and Therapeutic Targets in Coronavirus 229E Infection	16
Trypanosoma cruzi cardiomyocyte infection promotes innate immune response and metabolic rewiring	16
Quantification and Proteomic Characterization of β-Hydroxybutyrylation Modification in the Hearts of AMPKα2 Knockout Mice	15
The Biological Basis and Analyses of N-Glycan Microheterogeneity	15
Comparative N-Glycoproteomics Reveals Subtype-Specific N-Glycosylation Signatures and Immune Associations in Cholangiocarcinoma	15
A New Monoclonal Antibody Enables BAR Analysis of Subcellular Importin β1 Interactomes	15
Jolkinolide B Activates Mitophagy to Exhibit Antipancreatic Cancer Activity and Alleviate Cognitive Deficits in Alzheimer's Disease	15
Landscape of Steroid Dynamics in Pregnancy: Insights From the Maternal-Placental-Fetal Unit and Placental Models	15
Localized K63 Ubiquitin Signaling Is Regulated by VCP/p97 During Oxidative Stress	15
Temporal Proteomic and Phosphoproteomic Profiling Deciphers Molecular Dynamics of Acute-to-Chronic Kidney Disease After Ischemia-Reperfusion Injury, With Dock2 Emerging as a Key Regulator	15

Uncommon N-Glycan Structures in Anhydrobiotic Tardigrades	15
AMPylation Regulates 5′-3′ Exonuclease PLD3 Processing	15
Early Life Exposure to Deltamethrin Impairs Synaptic Function by Altering the Brain-Derived Extracellular Vesicle Proteome	15
In-Cell Proteomics Enables High-Resolution Spatial and Temporal Mapping of Early Xenopus tropicalis Embryos	15
Robust and accurate redox metabolomics and proteomics of clinical samples by in situ derivatization of free thiols	14
Analyzing N-Glycosylation Biosynthetic Networks Using Mass Spectrometry	14
MSstatsTMT Improves Accuracy of Thermal Proteome Profiling	14
Phosphorylation Dynamics in a flg22-Induced, G Protein–Dependent Network Reveals the AtRGS1 Phosphatase	14
A Proteogenomic Pipeline for the Analysis of Protein Biosynthesis Errors in the Human Pathogen Candida albicans	14
WITHDRAWN	14
Antibody-based enrichment of phosphotyrosine peptides using magnetic beads simplifies and outperforms results obtained using Protein A agarose beads	14
Phosphoproteomic Analysis of FLCN Inactivation Highlights Differential Kinase Pathways and Regulatory TFEB Phosphoserines	14
Sulconazole Induces PANoptosis by Triggering Oxidative Stress and Inhibiting Glycolysis to Increase Radiosensitivity in Esophageal Cancer	14
PS.107 High-throughput peptide-centric local stability assay extends protein-ligand identification to membrane proteins, tissues, and bacteria	14
Evaluating timsTOF Pro 2 for the analysis of histone PTMs measured in Global Chromatin Profiling using dia-PASEF and prm-PASEF	14
PS.85 C-COMPASS: A user-friendly neural network tool profiles cell compartments at protein and lipid levels	14
msqrob2PTM: Differential Abundance and Differential Usage Analysis of MS-Based Proteomics Data at the Posttranslational Modification and Peptidoform Level	14
Multi-omics Characterization of Acquired Olaparib Resistance in BRCA1 and BRCA2 Mutant Breast Cancer Cell Lines	14
An Automated Nanowell-Array Workflow for Quantitative Multiplexed Single-Cell Proteomics Sample Preparation at High Sensitivity	14
WITHDRAWN	14
High-Throughput Proteomic and Phosphoproteomic Analysis of Formalin-Fixed Paraffin-Embedded Tissues	13
Plasma proteomic profiling was used to discover a biochemical recurrence prediction model for prostate cancer	13
Bioinertization of NanoLC/MS/MS Systems by Depleting Metal Ions From the Mobile Phases for Phosphoproteomics	13
The Proteome of Large or Small Extracellular Vesicles in Pig Seminal Plasma Differs, Defining Sources and Biological Functions	13
Integrated Proteomics to Understand the Role of Neuritin (NRN1) as a Mediator of Cognitive Resilience to Alzheimer’s Disease	13
PS.116 Proteomic Profiling of Targeting ERK 1/2 and Vitamin A Signaling Pathways in Asthmatic Epithelial Cells for Airway Remodeling	13
Exploring the Spatial Landscape of the Estrogen Receptor Proximal Proteome With Antibody-Based Proximity Labeling	13
Experience-Induced Remodeling of the Hippocampal Post-synaptic Proteome and Phosphoproteome	13
Serum Exosomes From Epithelial Ovarian Cancer Patients Contain LRP1, Which Promotes the Migration of Epithelial Ovarian Cancer Cell	13
Galectin-4 Antimicrobial Activity Primarily Occurs Through its C-Terminal Domain	13
Single-Cell Proteomics Reveals Specific Cellular Subtypes in Cardiomyocytes Derived From Human iPSCs and Adult Hearts	13
GRable Version 1.0: A Software Tool for Site-Specific Glycoform Analysis With Improved MS1-Based Glycopeptide Detection With Parallel Clustering and Confidence Evaluation With MS2 Information	13
Proteome Mapping of the Human Pancreatic Islet Microenvironment Reveals Endocrine–Exocrine Signaling Sphere of Influence	13
Proteomic Analysis of Small Extracellular Vesicles From Lymphatic Affluents in Developing Premetastatic Niche in Melanoma	13
Nucleolar Proteomics Revealed the Regulation of RNA Exosome Localization by MTR4	13
Infosomes as Inflammatory Mediators: Proteomic Profiling of Proteins Enriched in Inflammatory Extracellular Vesicles	13
Mass Spectrometry–Driven Discovery of Neuropeptides Mediating Nictation Behavior of Nematodes	13
Author Index	13
Comparative Proteome and Cis-Regulatory Element Analysis Reveals Specific Molecular Pathways Conserved in Dog and Human Brains	13
Challenges and Opportunities for Single-cell Computational Proteomics	13
Predicting Protein Pathways Associated to Tumor Heterogeneity by Correlating Spatial Lipidomics and Proteomics: The Dry Proteomic Concept	13
Antibody Profiling of Pan-Cancer Viral Proteome Reveals Biomarkers for Nasopharyngeal Carcinoma Diagnosis and Prognosis	13
Application of Liquid-Liquid Extraction for N-terminal Myristoylation Proteomics	12
PS.6 ENRICHplus enables enhanced plasma proteome coverage while preserving quantitative accuracy	12
Cover	12
Immunopeptidomics Mapping of Listeria monocytogenes T Cell Epitopes in Mice	12
Insight Into the Dynamics of the Ixodes ricinus Nymphal Midgut Proteome	12
PS.40 Proteomic Analysis of Pancreatic Adaptations to 8:2 Fluorotelomer Alcohol (8:2 FTOH) Exposure in Male Mice Highlights Upregulation of Insulin Secretion	12
PS.58 Simultaneous chemoproteomic and phosphoproteomic profiling uncovers changes in the Hippo pathway in drug resistance	12
MS.8 High-throughput perturbation proteomics with DIA for construction of AI virtual cells	12
Integrated Multiomics Reveals Alterations in Paucimannose and Complex Type N-Glycans in Cardiac Tissue of Patients with COVID-19	12
Exploration of Nitrotyrosine-Containing Proteins and Peptides by Antibody-Based Enrichment Strategies	12
Cover	12
PS.16 Advancing Protein Misfolding Prediction with Quantum Machine Learning: Implications for Cancer and Neurodegenerative Diseases	12
PS.15 Structural characterization of N-glycan isomers with α2-3 and α2-6 sialyl linkages in phosvitin, a highly phosphorylated protein found in egg yolk	12
Cover	12
inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction	12
Unified Workflow for the Rapid and In-Depth Characterization of Bacterial Proteomes	12
PS.25 Bioactive Constituents, Antioxidant and Anti-Inflammatory Effects of Uvaria chamae Stem Extracts on Carbon Tetrachloride-Induced Toxicity in Rats	12
Exploring How Workflow Variations in Denaturation-Based Assays Impact Global Protein–Protein Interaction Predictions	12
Harmonizing Labeling and Analytical Strategies to Obtain Protein Turnover Rates in Intact Adult Animals	11
The Proteome and Phosphoproteome Uncovers Candidate Proteins Associated With Vacuolar Phosphate Signal Multipled by Vacuolar Phosphate Transporter 1 (VPT1) in Arabidopsis	11
An Improved Method for Sampling and Quantitative Protein Analytics of Cerebrospinal Fluid of Individual Mice	11
Early Proteomic Characteristics and Changes in the Optic Nerve Head, Optic Nerve, and Retina in a Rat Model of Ocular Hypertension	11
PS.75 Charting a nanoscale map of the human cell surface proteome using proximity labeling proteomics	11
PS.104 High-sensitivity in vivo N-terminomics reveals novel caspase substrates involved in cell extrusion during apoptosis in Drosophila wing discs	11
WITHDRAWN	11
Cover	11
Profiling Proteins and Phosphorylation Sites During T Cell Activation Using an Integrated Thermal Shift Assay	11
Plasma Proteomic of Adolescent Idiopathic Scoliosis	11
Editorial Board	11
Super Enhanced Purification of Denatured-Refolded Ubiquitinated Proteins by ThUBD Revealed Ubiquitinome Dysfunction in Liver Fibrosis	11
Serum N-Glycans as Independent Predictors of Death: A Prospective Investigation in the AEGIS Cohort	11
Global Proteomics Reveals Distinct Muscle Adaptations to Menstrual Cycle Phase-Based Sprint Interval Training in Endurance-Trained Females	11
PS.29 A Mass Tag Screening Platform Enables Pooled Evaluation of >5000 Mass Tags for plexDIA Applications and Beyond.	11
Comprehensive Evaluation of Cleavable Bioorthogonal Probes for Site-Specific O-GlcNAc Proteomics	11
Post-translational Modifications and Their Effects on the Conformation and Function of Hsp90 in Embryonic Stem Cells	11
Ciliopathy-Associated Missense Mutations in IFT140 are Tolerated by the Inherent Resilience of the IFT Machinery	11
LncRNA MALAT1 Facilitates HIV-1 Replication by Upregulation of CHCHD2 and Downregulation of IFN-I Expression	11
Exploring Virus–Host Interactions Through Combined Proteomic Approaches Identifies BANF1 as a New Essential Factor for African Swine Fever Virus	11
An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra	11
MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics	11
Innovations Toward Immunopeptidomics	11
Transcriptomics and Proteomics Identify Serotonin Transporter as a Promising Therapeutic Target for Essential Tremor	11
An Introduction to Analytical Challenges, Approaches, and Applications in Mass Spectrometry–Based Secretomics	11
Spatial Proteomics Reveals Differences in the Cellular Architecture of Antibody-Producing CHO and Plasma Cell–Derived Cells	11
Insights Into Glycobiology and the Protein-Glycan Interactome Using Glycan Microarray Technologies	11
MS.9 Statistical methods increase the accuracy and the interpretability of quantitative proteomic investigations	10
PS.22 Quantifying the Transcriptional Regulome Across Human Cell Types and Disease Contexts	10
Development of a Spectral Library for the Discovery of Altered Genomic Events in Mycobacterium avium Associated With Virulence Using Mass Spectrometry–Based Proteogenomic Analysis	10
PS.92 Deep Spatial Proteomics of Primary Cilia: Unlocking Subcellular Proteome Composition with Nanoscale Precision	10
Corrigendum for “Mass Spectrometry-Based Proteomics Analysis of Human Substantia Nigra From Parkinson's Disease Patients Identifies Multiple Pathways Potentially Involved in the Disease”	10
PS.51 Cell-Type-Specific Surfaceome Profiling of 100-500 Isolated Cells using a Droplet-Based Magnetic Affinity Purification System	10
PS.62 Deciphering the role of the MyPhoNE SLiM of PP1R binding to PP1cβ.	10
Plasma Proteome-Driven Liquid Biopsy for Individualized Monitoring and Risk Stratification of Immune-Related Adverse Events in Checkpoint Immunotherapy	10