OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Proteome Research is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-12-01 to 2025-12-01.)

Article	Citations
Margaret Dayhoff: A Personal Memoir	223
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	183
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	175
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	159
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	104
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis	86
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	85
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	83
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	79
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	79
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	78
Data-Independent Acquisition (DIA)-Based Label-Free Redox Proteomics (DIALRP) Identifies Prominent Cysteine Oxidations in Translation Machinery in Prostate Cancer Cells Under Oxidative Stress	66
Longitudinal Proteomic Changes in HCT 116 Colon Cancer Spheroids During Growth	62
An Improved Metabolomics Workflow Enables Untargeted Data Acquisition and Targeted Data Analysis Using Liquid Chromatography–Mass Spectrometry	61
Lipidomic Network Analysis Reveals Amyloid-β-Induced Lysosomal Lipid Accumulation in the Cortex and Hippocampus of 5xFAD Mice	60
Issue Publication Information	59
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	57
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	55
Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards	48
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	47
Metabolomic Signature in Men with Central Serous Chorioretinopathy Using UHPLC-MS	47
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	43
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	42
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	42
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	41

Pancreatic Digestive Enzyme Dispersion into Human Organs Outside the Gastrointestinal Tract	40
Tissue-, Blood-, and Urine-Based Proteomics Changes of Different Endometrial Receptivity Status in Patients after Fertility-Sparing Treatment of Atypical Endometrial Hyperplasia or Endometrial Cancer	40
Immunoproteomic Identification of Scedosporium boydii Antigens with Potential Diagnostic Interest in Cystic Fibrosis Patients	40
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	39
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	36
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	36
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	35
Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide	35
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling	35
Discovery of Oogenesis Biomarkers from Mouse Oocytes Using a Single-Cell Proteomics Approach	34
Scents and Flavors of Mass Spectrometry in Latin America	34
Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies	34
Back to the Future, from a Departing Editor	34
Molecular Mechanisms of Acanthamoeba castellanii Response to Different Sources of Oxidative Stress	33
Issue Editorial Masthead	32
Issue Publication Information	32
¹H NMR Reveals Predictive Metabolic Signatures of Response to RMP1–14 Treatment in the Plasma of Tumor-Bearing Mice	32
Issue Editorial Masthead	31
Issue Editorial Masthead	31
Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer	30
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies	30
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses	29
C_Half: Folding Stability Made Simple	28
Categorization and Characterization of Snake Venom Variability through Intact Toxin Analysis by Mass Spectrometry	28
Plasma Olink Proteomics Reveals Novel Biomarkers for Prediction and Diagnosis in Dilated Cardiomyopathy with Heart Failure	28
Analysis of the Porcine Reproductive and Respiratory Syndrome Virus Nucleocapsid Interactome	28
Peptide Mass Fingerprinting of South American Xenarthrans: A New Resource for Zooarcheology and Palaeontology	28
Considering Measurement Time and Depth in diaPASEF Plasma Proteomics	28
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms	27
Integration of Metabolomics, Lipidomics, and Proteomics Reveals the Metabolic Characterization of Nonalcoholic Steatohepatitis	27
Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles	27
EPURISp: Combining Enzymatic Digestion, Ultrafiltration, and Rapid In Situ Sample Purification for High-performance Proteomics	27
Dysregulation of Amino Acid, Lipid, and Acylpyruvate Metabolism in Idiopathic Intracranial Hypertension: A Non-targeted Case Control and Longitudinal Metabolomic Study	27
MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses	26
Alignment and Analysis of a Disparately Acquired Multibatch Metabolomics Study of Maternal Pregnancy Samples	26
Analysis of Vascular Smooth Muscle Cells from Thoracic Aortic Aneurysms Reveals DNA Damage and Cell Cycle Arrest as Hallmarks in Bicuspid Aortic Valve Patients	26
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities	26
Open-Source and FAIR Research Software for Proteomics	26
Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms	25
Machine Learning-Enhanced Cerebrospinal Fluid N-Glycome for the Diagnosis and Prognosis of Primary Central Nervous System Lymphoma	25
Defining Alzheimer’s Disease through Proteomic CSF Profiling	25
Spatial Venomics─Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging	25
Automated High-Throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent Acquisition	24
Novel PPT+SEC Workflow for High-Sensitivity Extracellular Vesicle Proteomics from Cell Media	24
Untargeted Metabolomics Analysis of Gingival Tissue in Patients with Severe Periodontitis	24
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data	24
Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development	24
Oral Squamous Cell Carcinoma Lipid Evaluation in Gingiva Tissue Stored in TRIzol via Shotgun Lipidomics and MALDI Mass Spectrometry Imaging	24
Issue Editorial Masthead	23
Whole Blood Metabolome Profiling for Stratification of Type 2 Diabetes Patients and Identification of Biomarkers for Diabetic Kidney Disease in Asian Indian Adults	23

Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples	23
Issue Editorial Masthead	23
Human-Derived Proteome Characterization of Tongue Coating in Colorectal Cancer	23
Issue Editorial Masthead	23
Electrochemically Etched Tapered-Tip Stainless-Steel Electrospray-Ionization Emitters for Capillary Electrophoresis–Mass Spectrometry	22
Tissue Mild Extraction Enriches Membrane, Cytoplasmic, and Secreted Proteomes for Biomarker Discovery	22
A Plasma Proteomics-Based Model for Identifying the Risk of Postpartum Depression Using Machine Learning	22
Proteomics Analysis of Knee Subchondral Bone Identifies Differentially Expressed Proteins Associated with Osteoarthritis	22
Quantitative Proteomics Reveal the Mechanism of MiR-138–5p Suppressing Cervical Cancer via Targeting ZNF385A	22
Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM	22
Identification of Blood Biomarkers in Ischemic Stroke by Integrated Analysis of Metabolomics and Proteomics	21
Proteomic and Transcriptomic Analyses Define Molecular Subtypes, Identify Biomarkers, and Suggest Potential Therapeutic Agent for Early-Stage HBV-Related Hepatocellular Carcinoma	21
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD	21
Identification of FGG as a Biomarker in Early Gastric Cancer via Tissue Proteomics and Clinical Verification	21
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation	21
Multiplex Assay to Determine Acute Phase Proteins in Modified Live PRRSV Vaccinated Pigs	21
The Combination of Quantitative Proteomics and Systems Genetics Analysis Reveals that PTN Is Associated with Sleep-Loss-Induced Cognitive Impairment	20
Comparative Tear Fluid Proteomics to Explore Treatment Responsiveness in Diabetic Macular Edema: A Pilot Study	20
HyPep: An Open-Source Software for Identification and Discovery of Neuropeptides Using Sequence Homology Search	20
Multiomics Insights into the Mechanism and Enhanced Efficacy of Tumor Treating Fields (TTFields) Therapy in Glioblastoma	20
HLA Allele-Specific Quantitative Profiling of Type 1 Diabetic B Lymphocyte Immunopeptidome	20
Quantitative Proteomics for the Development and Manufacturing of Human-Induced Pluripotent Stem Cell-Derived Neural Stem Cells Using Data-Independent Acquisition Mass Spectrometry	20
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics	20
Tbx18 Orchestrates Cytostructural Transdifferentiation of Cardiomyocytes to Pacemaker Cells by Recruiting the Epithelial–Mesenchymal Transition Program	19
BrainProt v3.0: An Integrative and Simplified Omics-Based Knowledge-Base About the Human Brain and Its Associated Diseases	19
Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels	19
Serum N-Glycan Profiling Identifies Candidate Glycan Biomarkers for Early Detection and Prediction of Alzheimer’s Disease	19
Cerebrospinal Fluid Protein Biomarker Discovery in CLN3	19
Insights into the Differential Preservation of Bone Proteomes in Inhumed and Entombed Cadavers from Italian Forensic Caseworks	19
Development of a Simple and Stable NanoESI Spray System Using Suction Wind from the MS Inlet	19
One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles	19
EIF4G2 Promotes Hepatocellular Carcinoma Progression via IRES-dependent PLEKHA1 Translation Regulation	19
High Throughput UHPLC-MS-Based Lipidomics Using Vacuum Jacketed Columns	19
Identification of LMAN1- and SURF4-Dependent Secretory Cargoes	18
Proteomics of Serum Samples for the Exploration of the Pathological Mechanism of Obstetric Antiphospholipid Syndrome	18
NMR Metabolomics Assessment of Osteogenic Differentiation of Adipose-Tissue-Derived Mesenchymal Stem Cells	18
PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors	18
Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics	18
Exploring Biomarkers in Type 2 Diabetes Mellitus versus Normoglycemia Identified through High-Throughput Proteomics: A Systematic Review and Meta-Analysis	18
De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast	18
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics	18
Quantitative Phosphoproteomics and Acetylomics of Safranal Anticancer Effects in Triple-Negative Breast Cancer Cells	18
Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 1	18
Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome	18
PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology	18
HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space	17
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics	17
Plasma Proteomics to Identify Drug Targets and Potential Drugs for Retinal Artery Occlusion: An Integrated Analysis in the UK Biobank	17
Multicompartment Quantitative Proteomics Revealing Potential Mechanisms Underlying the Treatment Effects of Mesenchymal-Derived Extracellular Vesicles in a Monkey Model of Cortical Injury	17
Quantitative Proteomics Reveal the Inherent Antibiotic Resistance Mechanism against Norfloxacin Resistance in Aeromonas hydrophila	17
A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell Therapies	17
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics	17
Serum N-Glycan Signatures as Potential Biomarkers for the Detection and Monitoring of IgG4-Related Disease	17
MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics	17
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control	17
Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine	17
Chronic Exposure to Petroleum-Derived Hydrocarbons Alters Human Skin Microbiome and Metabolome Profiles: A Pilot Study	17
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags	16
Storing Mass-Spectrometry Data in Simple Databases Enables Flexible and Intuitive Exploration without Time or Space Penalties	16
Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma	16
Data-Independent Acquisition-Based Quantitative Proteomics for Pairwise Comparison of Serum and Plasma	16
How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate	16
N-Terminomic Identification of Intracellular MMP-2 Substrates in Cardiac Tissue	16
Valuable Contributions and Lessons Learned from Proteomics and Metabolomics Studies of COVID-19	16
Precision-Engineered Nano-Electrospray Emitters Enhance Ionization Efficiency for Trap-Assisted Direct Infusion Mass Spectrometry: Application in Plasma Alzheimer’s Disease Proteomics	16
LineageFilter: Improved Proteotyping of Complex Samples Using Metaproteomics and Machine Learning	16
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale	16
Software-Assisted Data Processing Workflow for Intact Glycoprotein Mass Spectrometry	16
Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity	16
Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila	16
MGVB: a New Proteomics Toolset for Fast and Efficient Data Analysis	16
Nonsevere Burn Induces a Prolonged Systemic Metabolic Phenotype Indicative of a Persistent Inflammatory Response Postinjury	16
Size-Dependent Separation of Extracellular Vesicle Subtypes with Exodisc Enabling Proteomic Analysis in Prostate Cancer	16
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions	16
Impact of Static Myoblast Loading on Protein Secretion Linked to Tenocyte Migration	16
Multiplet-Assisted Peak Alignment for ¹H NMR-Based Metabolomics	16
Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy	16
NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning	16
Exploring the Effects of Probiotic Treatment on Urinary and Serum Metabolic Profiles in Healthy Individuals	15
S-Palmitoylation during Retinoic Acid-Induced Neuronal Differentiation of SH-SY5Y Neuroblastoma Cells	15

Subchronic Graphene Exposure Reshapes Skin Cell Metabolism	15
Ultrahigh-Resolution NMR with Water Signal Suppression for a Deeper Understanding of the Action of Antimetabolic Drugs on Diffuse Large B-Cell Lymphoma	15
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies	15
Issue Editorial Masthead	15
Issue Editorial Masthead	15
1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC–MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins	15
Novel Deep Eutectic Solvent-Based Protein Extraction Method for Pottery Residues and Archeological Implications	15
Adaptive Metabolism of Staphylococcus aureus Revealed by Untargeted Metabolomics	15
Impact of Internal Fragments on Top-Down Analysis of Intact Proteins by 193 nm UVPD	15
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems	15
Metabolomics Meets Clinics: A Multivariate Analysis of Plasma and Urine Metabolic Signatures in Pulmonary Arterial Hypertension	15
Issue Publication Information	15
Targeted Mass Spectrometry of Longitudinal Patient Sera Reveals LTBP1 as a Potential Surveillance Biomarker for High-Grade Serous Ovarian Carcinoma	15
Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries	15
Integrative Analysis of Fucosylated Tetra Glycoforms in Hepatocellular Carcinoma: A NanoLC-PRM-MS/MS and Machine Learning Approach	15
Designing a Comparative Proteomics Experiment: Retention-Time Alignment and Imputation Algorithms Affect Statistical Comparisons between Samples	15
LC-Orbitrap HRMS-Based Proteomics Reveals Novel Mitochondrial Dynamics Regulatory Proteins Associated with RasV12-Induced Glioblastoma (GBM) of Drosophila	14
IL18R1-Related Molecules as Biomarkers for Asthma Severity and Prognostic Markers for Idiopathic Pulmonary Fibrosis	14
Low-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis	14
Irradiation Causes Alterations of Polyamine, Purine, and Sulfur Metabolism in Red Blood Cells and Multiple Organs	14
Low-Invasive Sampling Method with Tape-Disc Sampling for the Taxonomic Identification of Archeological and Paleontological Bones by Proteomics	14
Issue Publication Information	14
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex	14
Analysis of Brain Protein Stability Changes in a Mouse Model of Alzheimer’s Disease	14
PPI-Affinity: A Web Tool for the Prediction and Optimization of Protein–Peptide and Protein–Protein Binding Affinity	14
Exosomal Proteome from Hepatocellular Carcinoma Patient-Derived Xenograft Mice Serves as Identity of Liver Cancer	14
Dynamic Responses of Chromosome-Binding Protein Complexes to Meiotic Prophase I of Mouse Spermatocyte	14
Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases	14
Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod	14
Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics	14
Fasciola hepatica Cathepsin L Zymogens: Immuno-Proteomic Evidence for Highly Immunogenic Zymogen-Specific Conformational Epitopes to Support Diagnostics Development	14
Issue Editorial Masthead	14
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues	14
Placental Proteomics Reveals an Elevated Level of Aldo-Keto Reductase 1-B1, Highlighting Its Potential Role in Spontaneous Preterm Birth	14
Issue Editorial Masthead	14
AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function	14
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data	13
Decoding the Impact of Isolation Window Selection and QuantUMS Filtering in DIA-NN for DIA Quantification of Peptides and Proteins	13
Dynamic Changes in Lymphocyte Subsets and Inflammation-Immune-Related Proteins in Patients with Thyroid Papillary Carcinoma before and after Radioactive Iodine Therapy	13
O-GlcNAcylation: Sagacious Orchestrator of Bone-, Joint-, and Spine-Related Diseases	13
Discovering Biomarkers for Asymptomatic Tuberculosis via Olink Proteomics and Machine Learning	13
Plasma Proteomic High-Performance Biomarkers for Early Diagnosis of Colorectal Cancer	13
Magnetic Bead-Based Workflow for Sensitive and Streamlined Cell Surface Proteomics	13
Evaluation of a Proteomics-Guided Protein Signature for Breast Cancer Detection in Breast Tissue	13
Single Cell Analysis of Proteoforms	13
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics	13
Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology	13
Profiling Glutathionylome in CD38-Mediated Epithelial–Mesenchymal Transition	13
Coupling Proximity Biotinylation with Genomic Targeting to Characterize Locus-Specific Changes in Chromatin Environments	13
OCIAD2 Promotes Cancer Progression via Metabolic Reprogramming in Lung Adenocarcinoma	13
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi	13
Proteomics and Metabolic Characteristics of Boar Seminal Plasma Extracellular Vesicles Reveal Biomarker Candidates Related to Sperm Motility	13
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments	13
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA	13
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase	13
High-Coverage Metabolomics Reveals Gut Microbiota-Related Metabolic Traits of Type-2 Diabetes in Serum	13
The Multiomics Landscape of Plasma-Derived Small Extracellular Vesicles during the Development of HPV⁺ Cervical Cancer	13
Correction to “The Curiosity of the Young”	13
Novel Diagnostic Biomarkers for High-Grade Serous Ovarian Cancer Uncovered by Data-Independent Acquisition Mass Spectrometry	13
SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides	13
Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics	13
Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms	13
Spatial Proteomic Profiling of Colorectal Cancer Revealed Its Tumor Microenvironment Heterogeneity	13
Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS ^G12D Inhibitor MRTX1133	13
Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied by Fibrosis in Human Stroma	13
Optimizing a Diagnostic Model of Periodontitis by Using Targeted Proteomics	12
A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data	12
Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing	12
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins	12
Plasma Metabolomics and Machine Learning Reveals Metabolic Alterations and Diagnostic Biomarkers for Deep Venous Thrombosis in Hypertensive Patients after Traumatic Fracture	12
Analysis of Protein–Protein Interactions in Chlamydomonas reinhardtii CC125 by Co-Fractionation Mass Spectrometry	12
Lysine Trimethylation in Planktonic and Pellicle Modes of Growth in Acinetobacter baumannii	12
Second Special Issue on Methods for Omics Research: Proteome Research and Beyond	12
Physiological Temperature and Osmotic Changes Drive Dynamic Proteome Alterations in the Leptospiral Outer Membrane and Enhance Protein Export Systems	12
Tumor Lipid Signatures Are Descriptive of Acquisition of Therapy Resistance in an Endocrine-Related Breast Cancer Mouse Model	12
Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development	12
Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre	12
Technical Evaluation of Plasma Proteomics Technologies	12
Issue Publication Information	12
Multiomic Analysis Links Neighborhood Disadvantage to Inflammatory Proteins and Tumorigenic Markers in ER+ Breast Cancer Plasma and Tumor Samples	12
Analysis of Stratifin Expression and Proteome Variation in a Rat Model of Acute Lung Injury	12
Issue Editorial Masthead	12
Delineating Bovine Milk Derived Microvesicles from Exosomes Using Proteomics	12
Proteomics Platform Reveals Broad-Spectrum Nanobodies for SARS-CoV-2 Variant Neutralization	12
Characterization of the Functional Interplay between the BRD7 and BRD9 Homologues in mSWI/SNF Complexes	12
Impact of Local Air Pressure on Ion Mobilities and Data Consistency in diaPASEF-Based High Throughput Proteomics	12
Non-Small Cell Lung Cancer Detection and Subtyping by UPLC-HRMS-Based Tissue Metabolomics	12
Accelerating Proteomics Using Broad Specificity Proteases	12
Identifying Links between Alzheimer’s Disease and Type 2 Diabetes through Proteomics	12
RNxQuest: An Extension to the xQuest Pipeline Enabling Analysis of Protein–RNA Cross-Linking/Mass Spectrometry Data	12
Proteomic Profiling Reveals RisR as a Novel Regulatory Element in the Virulence Network of Bordetella pertussis	12
Issue Editorial Masthead	12
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section	11
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis	11
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis	11