Journal of Proteome Research

Article	Citations
Leishmania donovani Induces Multiple Dynamic Responses in the Metabolome Associated with Amastigote Differentiation and Maturation Inside the Human Macrophage	203
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	126
Triqler for Protein Summarization of Data from Data-Independent Acquisition Mass Spectrometry	90
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	82
Comparative Proteomic Analysis Revealing ActJ-Regulated Proteins in Sinorhizobium meliloti	80
Targeted Metabolomics Reveals Birth Screening Biomarkers for Biliary Atresia in Dried Blood Spots	78
Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach	78
urPTMdb/TeaProt: Upstream and Downstream Proteomics Analysis	69
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry	65
The Ubiquitin Ligase CHIP Accelerates Papillary Thyroid Carcinoma Metastasis via the Transgelin–Matrix Metalloproteinase-9 Axis	63
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	61
Serum Metabolomic Signatures of Hirschsprung’s Disease Based on GC–MS and LC–MS	55
PPARα and PPARγ Signaling Is Enhanced in the Brain of the Naked Mole-Rat, a Mammal that Shows Intrinsic Neuroprotection from Oxygen Deprivation	54
ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics	53
Reliability of Serum-Derived Connectome Indicators in Identifying Cirrhosis	51
Lactyllysine Esterification Enables Efficient Lactylprotein Expression via Genetic Code Expansion and Supports Functional Proteomics Studies	49
Issue Editorial Masthead	46
Proteome and Glycoproteome Analyses Reveal Regulation of Protein Glycosylation Site-Specific Occupancy and Lysosomal Hydrolase Maturation by N-Glycan-Dependent ER-Quality Control	46
Proteome and Metabolome Profiling of Anticoagulant Disorders Induced by Familial Protein S Deficiency	46
Characteristics of Myocardial Structure and Central Carbon Metabolism during the Early and Compensatory Stages of Cardiac Hypertrophy	44
Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms	43
TMT-Based Quantitative Proteomics Revealed the Antibacterial Mechanism of Cinnamaldehyde against MRSA	43
Developing Method for Minor Acidic O-Glycan Analysis in Mucin and Cancer Cell Samples	42
Proteomics Analysis of Renal Cell Line Caki-2 with AFMID Overexpression and Potential Biomarker Discovery in Urine	42
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	41

Issue Publication Information	41
Super Heavy TMTpro Labeling Reagent: An Alternative and Higher-Charge-State-Amenable Stable-Isotope-Labeled TMTpro Variant	41
SLiMAn: An Integrative Web Server for Exploring Short Linear Motif-Mediated Interactions in Interactomes	39
Proteomics for Low Cell Numbers: How to Optimize the Sample Preparation Workflow for Mass Spectrometry Analysis	38
Alterations of Ceramides, Acylcarnitines, GlyceroLPLs, and Amines in NSCLC Tissues	38
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	38
PrSM-Level Side-by-Side Comparison of Online LC-MS Methods with Intact Histone H3 and H4 Proteoforms	37
Issue Publication Information	36
CONSTANd: An Efficient Normalization Method for Relative Quantification in Small- and Large-Scale Omics Experiments in R BioConductor and Python	35
FastCAT Accelerates Absolute Quantification of Proteins Using Multiple Short Nonpurified Chimeric Standards	35
Proteomic Characterization of Peritoneal Extracellular Vesicles in a Mouse Model of Peritoneal Fibrosis	34
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?	34
Issue Publication Information	33
Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors	33
Protein–Protein Interaction Prediction Based on Spectral Radius and General Regression Neural Network	32
Global Proteomic Analysis Reveals Alterations in Differentially Expressed Proteins between Cardiopathic Lamin A/C Mutations	32
Impact of Surfactants on Cumulative Trypsin Activity in Bottom-Up Proteome Analysis	31
Regional Differences in the Small Intestinal Proteome of Control Mice and of Mice Lacking Lysosomal Acid Lipase	31
Multiomics Evaluation of Human iPSCs and iPSC-Derived Neurons	31
Issue Editorial Masthead	30
Proteome Decomplexation of Trimeresurus erythrurus Venom from Mizoram, India	30
Issue Publication Information	30
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model	30
System-Wide Quantitative N-Glycoproteomic Analysis from K562 Cells and Mouse Liver Tissues	30
Site-Specific Glycosylation Analysis of Human and Murine Fcγ Receptor II Family Members Reveals Variant-Specific N-Glycosylation	29
Analysis of Brain Protein Stability Changes in Mouse Models of Normal Aging and α-Synucleinopathy Reveals Age- and Disease-Related Differences	29
Issue Editorial Masthead	29
Olink Proteomics-Based Exploration of Immuno-Oncology-Related Biomarkers Leading to Lung Adenocarcinoma Progression	28
Taurine Alleviates Ferroptosis-Induced Metabolic Impairments in C2C12 Myoblasts by Stabilizing the Labile Iron Pool and Improving Redox Homeostasis	28
Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns	28
Integrated Analysis of Cross-Links and Dead-End Peptides for Enhanced Interpretation of Quantitative XL-MS	28
Toward an Integrated Machine Learning Model of a Proteomics Experiment	28
ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus	27
In Vitro Kinase-to-Phosphosite Database (iKiP-DB) Predicts Kinase Activity in Phosphoproteomic Datasets	27
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions (Zalophus californianus)	27
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis	27
Neuropeptidomes of Tenebrio molitor L. and Zophobas atratus Fab. (Coleoptera, Polyphaga: Tenebrionidae)	27
Automated Assignment of Proteoform Classification Levels	26
ProteoSushi: A Software Tool to Biologically Annotate and Quantify Modification-Specific, Peptide-Centric Proteomics Data Sets	26
Proteomic Analysis of Oil-Roasted Cashews Using a Customized Allergen-Focused Protein Database	26
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	26
The Novel Interplay between Commensal Gut Bacteria and Metabolites in Diet-Induced Hyperlipidemic Rats Treated with Simvastatin	26
Effect of Processing Methods of Human Saliva on the Proteomic Profile and Protein-Mediated Biological Processes	25
Proteomic Study Reveals Major Pathways Regulating the Development of Black Soldier Fly	25
Deep Time Paleoproteomics: Looking Forward	24
Proteomic Analysis of Caco-2 Cells Disrupted by EcN 1917-Derived OMVs Reveals Molecular Information on Bacteria-Mediated Cancer Cell Migration	24
Correction to “Longitudinal Serum Proteomics Characterization of CD19-CAR-T Cell Therapy for B-Cell Malignancies”	24
MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB	24
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section	24
Lipidomics Study of Type 1 Diabetic Rats Using Online Phase Transition Trapping-Supercritical Fluid Extraction-Chromatography Coupled with Quadrupole Time-of-Flight Tandem Mass Spectrometry	23

Picoliter Single-Cell Reactor for Proteome Profiling by In Situ Cell Lysis, Protein Immobilization, Digestion, and Droplet Transfer	23
Interactome of Site-Specifically Acetylated Linker Histone H1	23
Comparative Analysis of Protein Quantification by the SomaScan Assay versus Orthogonal Methods in Urine from People with Diabetic Kidney Disease	23
Systematic Proteomics Study on the Embryonic Development of Danio rerio	23
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	23
Tissue Lipidomic Alterations Induced by Prolonged Dexamethasone Treatment	23
IP-LC-MSMS Enables Identification of Three Tau O-GlcNAcylation Sites as O-GlcNAcase Inhibition Pharmacodynamic Readout in Transgenic Mice Overexpressing Human Tau	22
H-NOX Influences Biofilm Formation, Central Metabolism, and Quorum Sensing in Paracoccus denitrificans	22
Mapping Tyrosine Kinases Based on a TK Activity-Representing Peptide Library Reveals a Role for SRC in H1975 Drug Resistance	22
Issue Publication Information	22
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis	22
Issue Editorial Masthead	22
Introducing Molecular Hypernetworks for Discovery in Multidimensional Metabolomics Data	22
Issue Editorial Masthead	22
Extraction Protocol for Parallel Analysis of Proteins and DNA from Ancient Teeth and Dental Calculus	22
Issue Publication Information	21
MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin	21
Metabolic Profile of Individuals with and without Type 2 Diabetes from Sub-Saharan Africa	21
Plasma TNFRSF11B as a New Predictive Inflammatory Marker of Sepsis–ARDS with Endothelial Dysfunction	21
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	21
Dynamics of Single-Cell Protein Covariation during Epithelial–Mesenchymal Transition	21
Detectability of Biotin Tags by LC–MS/MS	21
Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA	21
Correction to “d2ome, Software for in Vivo Protein Turnover Analysis Using Heavy Water Labeling and LC–MS, Reveals Alterations of Hepatic Proteome Dynamics in a Mouse Model of NAFLD”	21
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	21
High-Level Secretion of Pregnancy Zone Protein Is a Novel Biomarker of DNA Damage-Induced Senescence and Promotes Spontaneous Senescence	20
Performing Selection on a Monotonic Function in Lieu of Sorting Using Layer-Ordered Heaps	20
Issue Editorial Masthead	20
Quantitative Proteomic Analysis Revealed Broad Roles of N6-Methyladenosine in Heat Shock Response	20
Issue Publication Information	20
lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry	20
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	20
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	20
Issue Editorial Masthead	20
Issue Editorial Masthead	20
The Curiosity of the Young	19
COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics	19
PeptideRanger: An R Package to Optimize Synthetic Peptide Selection for Mass Spectrometry Applications	19
Correction to “Label-Free Quantitative Detection and Comparative Analysis of Lysine Acetylation during the Different Life Stages of Eimeria tenella”	19
Sensitive Analysis of Recombinant Human Erythropoietin Glycopeptides by On-Line Phenylboronic Acid Solid-Phase Extraction Capillary Electrophoresis Mass Spectrometry	19
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	19
Cellular Ligand–Receptor Perturbations Unravel MEIS2 as a Key Factor for the Aggressive Progression and Prognosis in Stage II/III Colorectal Cancer	19
Immobilized Titanium (IV) Ion Affinity Chromatography Contributes to Efficient Proteomics Analysis of Cellular Nucleic Acid-Binding Proteins	18
Issue Publication Information	18
Issue Publication Information	18
Protein Dynamic Landscape of Pig Embryos during Peri-Implantation Development	18
Issue Editorial Masthead	18
Single-Cell Proteomics Accelerates toward Proteoforms	18
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	18
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.	18
Sex-Specific Alterations in Placental Proteomics Induced by Intrauterine Hyperglycemia	18
Identification and Functional Analysis of Lysine 2-Hydroxyisobutyrylation in Cyanobacteria	18
Mass Spectrometry-Based Proteomics of Poly(methylmethacrylate)-Embedded Bone	18
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	17
UPLC-MS-Based Serum Metabolic Profiling Reveals Potential Biomarkers for Predicting Propofol Responsiveness in Females	17
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	17
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline	17
Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics	17
Automated Proteomics Workflows for High-Throughput Library Generation and Biomarker Detection Using Data-Independent Acquisition	17
Quantitative Proteomics Reveals a Novel Role of the E3 Ubiquitin-Protein Ligase FANCL in the Activation of the Innate Immune Response through Regulation of TBK1 Phosphorylation during Peste des Petits	17
Temporal Profiling of Epitranscriptomic Modulators during Osteogenic Differentiation of Human Embryonic Stem Cells	17
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss	17
Metabolomic Sexual Dimorphism of the Mouse Brain is Predominantly Abolished by Gonadectomy with a Higher Impact on Females	17
Bridging the Polar and Hydrophobic Metabolome in Single-Run Untargeted Liquid Chromatography-Mass Spectrometry Dried Blood Spot Metabolomics for Clinical Purposes	17
Kinase-Catalyzed Biotinylation to Map Cell Signaling Pathways: Application to Epidermal Growth Factor Signaling	17
The O-Glycome of Human Nigrostriatal Tissue and Its Alteration in Parkinson’s Disease	17
GlycoTCFM: Glycoproteomics Based on Two Complementary Fragmentation Methods Reveals Distinctive O-Glycosylation in Human Sperm and Seminal Plasma	17
Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion	17
Distinct Glycosylation Responses to Spinal Cord Injury in Regenerative and Nonregenerative Models	17
Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans	17
Inhibition of the Alternative Complement Pathway May Cause Secretion of Factor B, Enabling an Early Detection of Pancreatic Cancer	17
Meta4P: A User-Friendly Tool to Parse Label-Free Quantitative Metaproteomic Data and Taxonomic/Functional Annotations	16
Understanding the Relationship between Intrinsic Cardiorespiratory Fitness and Serum and Skeletal Muscle Metabolomics Profile	16
Integrated View of Baseline Protein Expression in Human Tissues	16
Multi-Omics Study Reveals Nc886/vtRNA2-1 as a Positive Regulator of Prostate Cancer Cell Immunity	16
Use of Proteomics for Dietary Reconstruction: A Case Study Using Animal Teeth from Ancient Mesopotamia	16
A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry	16
Integrative Proteogenomics Using ProteomeGenerator2	16
Detecting Human Contaminant Genetically Variant Peptides in Nonhuman Samples	16
Differential Proteomic Profiling at Different Phases of Dengue Infection: An Intricate Insight from Proteins to Pathogenesis	16

The Proteomic Landscape of Monocytes in Response to Colorectal Cancer Cells	16
Simultaneous Polar Metabolite and N-Glycan Extraction Workflow for Joint-Omics Analysis: A Synergistic Approach for Novel Insights into Diseases	16
Analysis of the Proteomic Profile in Serum of Irradiated Nonhuman Primates Treated with Ex-Rad, a Radiation Medical Countermeasure	16
Omics and Transgenic Analyses Reveal that Salvianolic Acid B Exhibits its Anti-Inflammatory Effects through Inhibiting the Mincle-Syk-Related Pathway in Macrophages	16
Characterization of the Antibody Response to SARS-CoV-2 Infection in COVID-19 Transplant versus Nontransplant Recipients by Ig-MS	16
Vocabulary Matters: An Annotation Pipeline and Four Deep Learning Algorithms for Enzyme Named Entity Recognition	16
A SARS-CoV-2 Peptide Spectral Library Enables Rapid, Sensitive Identification of Virus Peptides in Complex Biological Samples	15
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms	15
Disruptive Effects of Resveratrol on a Bacterial Pathogen of Beans	15
Onto Grid Purification and 3D Reconstruction of Protein Complexes Using Matrix-Landing Native Mass Spectrometry	15
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development	15
Repeat-Enhancing Featured Ion-Guided Stoichiometry for Identification and Quantification of Direct Infusion Proteome	15
Machine Learning Reveals Serum Glycopatterns as Potential Biomarkers for the Diagnosis of Nonalcoholic Fatty Liver Disease (NAFLD)	15
High-Throughput Detection of an Alkaloidal Plant Metabolome in Plant Extracts Using LC-ESI-QTOF-MS	15
Exploiting pglB Oligosaccharyltransferase-Positive and -Negative Campylobacter jejuni and a Multiprotease Digestion Strategy to Identify Novel Sites Modified by N-Linked Protein Glycosyl	15
Genetic and Environmental Contributions to Variation in the Stable Urinary NMR Metabolome over Time: A Classic Twin Study	15
Proteomics-Based Approach Reveals the Involvement of SERPINB9 in Recurrent and Relapsed Multiple Myeloma	15
Discovery and Verification of Sjögren’s Syndrome Protein Biomarkers in Tears by Targeted LC-MRM	15
Preparative Electrophoresis for HDL Particle Size Separation and Intact-Mass Apolipoprotein Proteoform Analysis	15
Divergent Antibody Repertoires Found for Omicron versus Wuhan SARS-CoV-2 Strains Using Ig-MS	14
Comprehensive Lipidomic Workflow for Multicohort Population Phenotyping Using Stable Isotope Dilution Targeted Liquid Chromatography-Mass Spectrometry	14
Phosphoproteome and Biological Evidence Revealed Abnormal Calcium Homeostasis in Keloid Fibroblasts and Induction of Aberrant Platelet Aggregation	14
Proximity Proteomics Has Potential for Extracellular Vesicle Identification	14
Evaluation of Volumetric Absorptive Microsampling and Mass Spectrometry Data-Independent Acquisition of Hemoglobin-Related Clinical Markers	14
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	14
High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample Processing	14
IreK-Mediated, Cell Wall-Protective Phosphorylation in Enterococcus faecalis	14
Edwardsiella tarda Attenuates Virulence upon Oxytetracycline Resistance	14
Reproducible Determination of High-Density Lipoprotein Proteotypes	14
Functional Proteomics Analysis of Norfloxacin-Resistant Edwardsiella tarda	14
Nontargeted Serum Lipid Profiling of Nonalcoholic Steatohepatitis by Multisegment Injection–Nonaqueous Capillary Electrophoresis–Mass Spectrometry: A Multiplexed Separation Platform for Resolving Ioni	14
Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2	14
Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer	14
Identification of Microproteins in Saccharomyces cerevisiae under Different Stress Conditions	14
Identification, Measurement, and Assessment of the Clinical Utility of Human Pancreatic Polypeptide by Liquid Chromatography–Tandem Mass Spectrometry	14
Automation to Enable High-Throughput Chemical Proteomics	14
Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells	13
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	13
Extracellular Vesicle-Driven Crosstalk between Legume Plants and Rhizobia: The Peribacteroid Space of Symbiosomes as a Protein Trafficking Interface	13
GlycoPCT: Pressure Cycling Technology-Based Quantitative Glycoproteomics Reveals Distinctive N-Glycosylation in Human Liver Biopsy Samples of Nonalcoholic Fatty Liver Disease	13
Integrated View of Baseline Protein Expression in Human Tissues Using Public Data Independent Acquisition Data Sets	13
A Multiyear Longitudinal Harmonization Study of Quality Controls in Mass Spectrometry Proteomics Core Facilities	13
The Exoproteome and Surfaceome of Toxigenic Corynebacterium diphtheriae 1737 and Its Response to Iron Restriction and Growth on Human Hemoglobin	13
Machine Learning in Proteomics and Metabolomics	13
Organ-Based Proteome and Post-Translational Modification Profiling of a Widely Cultivated Tropical Water Fish, Labeo rohita	13
Prioritization of the Secondary Metabolites for the Rapid Annotation Based on Liquid Chromatography-High Resolution Mass Spectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata	13
Dynamic Cellular Proteome Remodeling during SARS-CoV-2 Infection. Identification of Plasma Protein Readouts	13
Identification of Plasma Metabolites and Dipeptides as Diagnostic Biomarkers for Psoriasis Vulgaris through Liquid Chromatography-High Resolution Mass Spectrometry-Based Metabolomics	13
Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows	13
Quantitative Analysis of Nonhistone Lysine Methylation Sites and Lysine Demethylases in Breast Cancer Cell Lines	13
Expression of SARS-CoV-2 Nonstructural Proteins 3 and 4 Can Tune the Unfolded Protein Response in Cell Culture	13
Comparative Analysis of Transcriptomic and Proteomic Expression between Two Non-Small Cell Lung Cancer Subtypes	13
CIMAGE2.0: An Expanded Tool for Quantitative Analysis of Activity-Based Protein Profiling (ABPP) Data	13
Executable Network Models of Integrated Multiomics Data	13
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	13
Exercise Alleviates Behavioral Disorders but Shapes Brain Metabolism of APP/PS1 Mice in a Region- and Exercise-Specific Manner	13
Quantitative Top-down Proteomics Revealed Kinase Inhibitor-Induced Proteoform-Level Changes in Cancer Cells	13
Deep Time Course Proteomics of SARS-CoV- and SARS-CoV-2-Infected Human Lung Epithelial Cells (Calu-3) Reveals Strong Induction of Interferon-Stimulated Gene Expression by SARS-CoV-2 in Contrast to SAR	13
Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes	13
The Glomerulus Multiomics Analysis Provides Deeper Insights into Diabetic Nephropathy	13
Optimizing Spectronaut Search Parameters to Improve Data Quality with Minimal Proteome Coverage Reductions in DIA Analyses of Heterogeneous Samples	13
Impact of Systemic versus Intratympanic Dexamethasone Administration on the Perilymph Proteome	13
Confident Identification of Citrullination and Carbamylation Assisted by Peptide Retention Time Prediction	12
Driving Single Cell Proteomics Forward with Innovation	12
Enhancement of Proteome Coverage by Ion Mobility Fractionation Coupled to PASEF on a TIMS–QTOF Instrument	12
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems	12
Exosomes Derived from Bone Marrow Mesenchymal Stem Cells Alleviate Rheumatoid Arthritis Symptoms via Shuttling Proteins	12
Optimized Workflow for Enrichment and Identification of Biotinylated Peptides Using Tamavidin 2-REV for BioID and Cell Surface Proteomics	12
Discovery Proteomics for COVID-19: Where We Are Now	12
Unphosphorylated Form of the PAQosome Core Subunit RPAP3 Binds Ribosomal Preassembly Complexes to Modulate Ribosome Biogenesis	12
Deciphering the Properties and Functions of Glycoproteins Using Quantitative Proteomics	12
Comprehensive Urinary Proteome Profiling Analysis Identifies Diagnosis and Relapse Surveillance Biomarkers for Bladder Cancer	12
Metabolomics Study Revealing Purines as Potential Diagnostic Biomarkers of Acute Respiratory Distress Syndrome in Patients with Community─Acquired Pneumonia	12
Quantification of Serum Metabolites in Early Colorectal Adenomas Using Isobaric Labeling Mass Spectrometry	12
Hepatic Metabolic Profiling of Lifelong Exercise Training Rats	12
Protein Contaminants Matter: Building Universal Protein Contaminant Libraries for DDA and DIA Proteomics	12
Proteomics Analysis of Plasma-Derived Exosomes Unveils the Aberrant Complement and Coagulation Cascades in Dermatomyositis/Polymyositis	12
Optimization of Ultrafast Proteomics Using an LC-Quadrupole-Orbitrap Mass Spectrometer with Data-Independent Acquisition	12
Multi-protease Approach for the Improved Identification and Molecular Characterization of Small Proteins and Short Open Reading Frame-Encoded Peptides	12
Issue Publication Information	11
Comprehensive Serum Lipidomics for Detecting Incipient Dementia in Parkinson’s Disease	11
A Simple Optimization Workflow to Enable Precise and Accurate Imputation of Missing Values in Proteomic Data Sets	11
Differential Proteome Profiling Analysis under Pesticide Stress by the Use of a Nano-UHPLC-MS/MS Untargeted Proteomic-Based Approach on a 3D-Developed Neurospheroid Model: Identification of Protein In	11
Structural Analysis of the 20S Proteasome Using Native Mass Spectrometry and Ultraviolet Photodissociation	11
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	11
Top-Down Proteomics and the Challenges of True Proteoform Characterization	11
Urinary Volatilomics Unveils a Candidate Biomarker Panel for Noninvasive Detection of Clear Cell Renal Cell Carcinoma	11
Serum Bile Acid Metabolites Predict the Therapeutic Effect of Mesalazine in Patients with Ulcerative Colitis	11
Shared Proteins and Pathways of Cardiovascular and Cognitive Diseases: Relation to Vascular Cognitive Impairment	11
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	11
Rapid Identification of Ancient Leather Species Using an Enzyme-Linked Immunosorbent Assay Based on Proteomic and Evolutionary Analyses	11
Identification and Quantification of Human Relaxin Proteins by Immunoaffinity-Mass Spectrometry	11
MALDI(+) FT-ICR Mass Spectrometry (MS) Combined with Machine Learning toward Saliva-Based Diagnostic Screening for COVID-19	11
Exploring the Tomato Root Protein Network Exploited by Core Type 3 Effectors from the Ralstonia solanacearum Species Complex	11
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline	11