Journal of Proteome Research

Article	Citations
Leishmania donovani Induces Multiple Dynamic Responses in the Metabolome Associated with Amastigote Differentiation and Maturation Inside the Human Macrophage	203
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	126
Triqler for Protein Summarization of Data from Data-Independent Acquisition Mass Spectrometry	90
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	82
Comparative Proteomic Analysis Revealing ActJ-Regulated Proteins in Sinorhizobium meliloti	80
Targeted Metabolomics Reveals Birth Screening Biomarkers for Biliary Atresia in Dried Blood Spots	78
Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach	78
urPTMdb/TeaProt: Upstream and Downstream Proteomics Analysis	69
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry	65
PPARα and PPARγ Signaling Is Enhanced in the Brain of the Naked Mole-Rat, a Mammal that Shows Intrinsic Neuroprotection from Oxygen Deprivation	63
Serum Metabolomic Signatures of Hirschsprung’s Disease Based on GC–MS and LC–MS	63
ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics	61
Reliability of Serum-Derived Connectome Indicators in Identifying Cirrhosis	55
Lactyllysine Esterification Enables Efficient Lactylprotein Expression via Genetic Code Expansion and Supports Functional Proteomics Studies	54
Issue Editorial Masthead	53
Proteome and Metabolome Profiling of Anticoagulant Disorders Induced by Familial Protein S Deficiency	51
Proteome and Glycoproteome Analyses Reveal Regulation of Protein Glycosylation Site-Specific Occupancy and Lysosomal Hydrolase Maturation by N-Glycan-Dependent ER-Quality Control	49
Characteristics of Myocardial Structure and Central Carbon Metabolism during the Early and Compensatory Stages of Cardiac Hypertrophy	46
Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms	46
TMT-Based Quantitative Proteomics Revealed the Antibacterial Mechanism of Cinnamaldehyde against MRSA	46
Developing Method for Minor Acidic O-Glycan Analysis in Mucin and Cancer Cell Samples	44
Issue Publication Information	43
Proteomics Analysis of Renal Cell Line Caki-2 with AFMID Overexpression and Potential Biomarker Discovery in Urine	43
Super Heavy TMTpro Labeling Reagent: An Alternative and Higher-Charge-State-Amenable Stable-Isotope-Labeled TMTpro Variant	42
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	42

Proteomics for Low Cell Numbers: How to Optimize the Sample Preparation Workflow for Mass Spectrometry Analysis	41
SLiMAn: An Integrative Web Server for Exploring Short Linear Motif-Mediated Interactions in Interactomes	41
Alterations of Ceramides, Acylcarnitines, GlyceroLPLs, and Amines in NSCLC Tissues	41
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	40
PrSM-Level Side-by-Side Comparison of Online LC-MS Methods with Intact Histone H3 and H4 Proteoforms	39
CONSTANd: An Efficient Normalization Method for Relative Quantification in Small- and Large-Scale Omics Experiments in R BioConductor and Python	38
FastCAT Accelerates Absolute Quantification of Proteins Using Multiple Short Nonpurified Chimeric Standards	38
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?	38
Issue Publication Information	38
Proteomic Characterization of Peritoneal Extracellular Vesicles in a Mouse Model of Peritoneal Fibrosis	37
Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors	36
Protein–Protein Interaction Prediction Based on Spectral Radius and General Regression Neural Network	35
Issue Publication Information	35
Global Proteomic Analysis Reveals Alterations in Differentially Expressed Proteins between Cardiopathic Lamin A/C Mutations	34
Impact of Surfactants on Cumulative Trypsin Activity in Bottom-Up Proteome Analysis	34
Multiomics Evaluation of Human iPSCs and iPSC-Derived Neurons	33
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model	33
Regional Differences in the Small Intestinal Proteome of Control Mice and of Mice Lacking Lysosomal Acid Lipase	33
Proteome Decomplexation of Trimeresurus erythrurus Venom from Mizoram, India	32
System-Wide Quantitative N-Glycoproteomic Analysis from K562 Cells and Mouse Liver Tissues	32
Rising Stars in Proteomics and Metabolomics	31
Correction to “Integrative Metabolic and Proteomic Profiling of the Brainstem in Spontaneously Hypertensive Rats”	31
Issue Publication Information	31
Issue Editorial Masthead	30
Olink Proteomics-Based Exploration of Immuno-Oncology-Related Biomarkers Leading to Lung Adenocarcinoma Progression	30
Issue Editorial Masthead	30
Site-Specific Glycosylation Analysis of Human and Murine Fcγ Receptor II Family Members Reveals Variant-Specific N-Glycosylation	30
Analysis of Brain Protein Stability Changes in Mouse Models of Normal Aging and α-Synucleinopathy Reveals Age- and Disease-Related Differences	30
Toward an Integrated Machine Learning Model of a Proteomics Experiment	29
Integrated Analysis of Cross-Links and Dead-End Peptides for Enhanced Interpretation of Quantitative XL-MS	29
Taurine Alleviates Ferroptosis-Induced Metabolic Impairments in C2C12 Myoblasts by Stabilizing the Labile Iron Pool and Improving Redox Homeostasis	29
ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus	28
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis	28
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions (Zalophus californianus)	28
In Vitro Kinase-to-Phosphosite Database (iKiP-DB) Predicts Kinase Activity in Phosphoproteomic Datasets	28
Neuropeptidomes of Tenebrio molitor L. and Zophobas atratus Fab. (Coleoptera, Polyphaga: Tenebrionidae)	28
Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns	28
The Novel Interplay between Commensal Gut Bacteria and Metabolites in Diet-Induced Hyperlipidemic Rats Treated with Simvastatin	27
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	27
Automated Assignment of Proteoform Classification Levels	27
Proteomic Analysis of Oil-Roasted Cashews Using a Customized Allergen-Focused Protein Database	27
ProteoSushi: A Software Tool to Biologically Annotate and Quantify Modification-Specific, Peptide-Centric Proteomics Data Sets	27
Correction to “Longitudinal Serum Proteomics Characterization of CD19-CAR-T Cell Therapy for B-Cell Malignancies”	26
Proteomic Study Reveals Major Pathways Regulating the Development of Black Soldier Fly	26
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section	26
Deep Time Paleoproteomics: Looking Forward	26
Effect of Processing Methods of Human Saliva on the Proteomic Profile and Protein-Mediated Biological Processes	26
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	25
MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB	25
Comparative Analysis of Protein Quantification by the SomaScan Assay versus Orthogonal Methods in Urine from People with Diabetic Kidney Disease	25

Proteomic Analysis of Caco-2 Cells Disrupted by EcN 1917-Derived OMVs Reveals Molecular Information on Bacteria-Mediated Cancer Cell Migration	25
Interactome of Site-Specifically Acetylated Linker Histone H1	24
Picoliter Single-Cell Reactor for Proteome Profiling by In Situ Cell Lysis, Protein Immobilization, Digestion, and Droplet Transfer	24
Lipidomics Study of Type 1 Diabetic Rats Using Online Phase Transition Trapping-Supercritical Fluid Extraction-Chromatography Coupled with Quadrupole Time-of-Flight Tandem Mass Spectrometry	24
Issue Publication Information	24
Systematic Proteomics Study on the Embryonic Development of Danio rerio	24
Tissue Lipidomic Alterations Induced by Prolonged Dexamethasone Treatment	24
Introducing Molecular Hypernetworks for Discovery in Multidimensional Metabolomics Data	23
IP-LC-MSMS Enables Identification of Three Tau O-GlcNAcylation Sites as O-GlcNAcase Inhibition Pharmacodynamic Readout in Transgenic Mice Overexpressing Human Tau	23
Correction to “d2ome, Software for in Vivo Protein Turnover Analysis Using Heavy Water Labeling and LC–MS, Reveals Alterations of Hepatic Proteome Dynamics in a Mouse Model of NAFLD”	23
Extraction Protocol for Parallel Analysis of Proteins and DNA from Ancient Teeth and Dental Calculus	23
Issue Editorial Masthead	23
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis	23
Mapping Tyrosine Kinases Based on a TK Activity-Representing Peptide Library Reveals a Role for SRC in H1975 Drug Resistance	23
Issue Editorial Masthead	23
H-NOX Influences Biofilm Formation, Central Metabolism, and Quorum Sensing in Paracoccus denitrificans	23
Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA	22
Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology	22
Detectability of Biotin Tags by LC–MS/MS	22
MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin	22
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	22
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	22
Issue Publication Information	22
Dynamics of Single-Cell Protein Covariation during Epithelial–Mesenchymal Transition	22
Metabolic Profile of Individuals with and without Type 2 Diabetes from Sub-Saharan Africa	22
Plasma TNFRSF11B as a New Predictive Inflammatory Marker of Sepsis–ARDS with Endothelial Dysfunction	22
Issue Editorial Masthead	21
High-Level Secretion of Pregnancy Zone Protein Is a Novel Biomarker of DNA Damage-Induced Senescence and Promotes Spontaneous Senescence	21
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	21
lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry	21
Performing Selection on a Monotonic Function in Lieu of Sorting Using Layer-Ordered Heaps	21
Issue Publication Information	21
Issue Editorial Masthead	21
Issue Editorial Masthead	21
Issue Publication Information	21
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	21
Sensitive Analysis of Recombinant Human Erythropoietin Glycopeptides by On-Line Phenylboronic Acid Solid-Phase Extraction Capillary Electrophoresis Mass Spectrometry	20
PeptideRanger: An R Package to Optimize Synthetic Peptide Selection for Mass Spectrometry Applications	20
Quantitative Proteomic Analysis Revealed Broad Roles of N6-Methyladenosine in Heat Shock Response	20
COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics	20
Cellular Ligand–Receptor Perturbations Unravel MEIS2 as a Key Factor for the Aggressive Progression and Prognosis in Stage II/III Colorectal Cancer	20
Correction to “Label-Free Quantitative Detection and Comparative Analysis of Lysine Acetylation during the Different Life Stages of Eimeria tenella”	20
Protein Dynamic Landscape of Pig Embryos during Peri-Implantation Development	20
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.	20
The Curiosity of the Young	20
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	20
Immobilized Titanium (IV) Ion Affinity Chromatography Contributes to Efficient Proteomics Analysis of Cellular Nucleic Acid-Binding Proteins	19
Mass Spectrometry-Based Proteomics of Poly(methylmethacrylate)-Embedded Bone	19
Identification and Functional Analysis of Lysine 2-Hydroxyisobutyrylation in Cyanobacteria	19
Issue Publication Information	19
Sex-Specific Alterations in Placental Proteomics Induced by Intrauterine Hyperglycemia	19
Issue Publication Information	19
Issue Editorial Masthead	19
Single-Cell Proteomics Accelerates toward Proteoforms	19
Metabolomic Sexual Dimorphism of the Mouse Brain is Predominantly Abolished by Gonadectomy with a Higher Impact on Females	18
Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics	18
Kinase-Catalyzed Biotinylation to Map Cell Signaling Pathways: Application to Epidermal Growth Factor Signaling	18
Quantitative Proteomics Reveals a Novel Role of the E3 Ubiquitin-Protein Ligase FANCL in the Activation of the Innate Immune Response through Regulation of TBK1 Phosphorylation during Peste des Petits	18
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	18
Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans	18
Inhibition of the Alternative Complement Pathway May Cause Secretion of Factor B, Enabling an Early Detection of Pancreatic Cancer	18
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline	18
Distinct Glycosylation Responses to Spinal Cord Injury in Regenerative and Nonregenerative Models	18
Automated Proteomics Workflows for High-Throughput Library Generation and Biomarker Detection Using Data-Independent Acquisition	18
Bridging the Polar and Hydrophobic Metabolome in Single-Run Untargeted Liquid Chromatography-Mass Spectrometry Dried Blood Spot Metabolomics for Clinical Purposes	18
Integrated View of Baseline Protein Expression in Human Tissues	17
Omics and Transgenic Analyses Reveal that Salvianolic Acid B Exhibits its Anti-Inflammatory Effects through Inhibiting the Mincle-Syk-Related Pathway in Macrophages	17
Characterization of the Antibody Response to SARS-CoV-2 Infection in COVID-19 Transplant versus Nontransplant Recipients by Ig-MS	17
UPLC-MS-Based Serum Metabolic Profiling Reveals Potential Biomarkers for Predicting Propofol Responsiveness in Females	17
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	17
Temporal Profiling of Epitranscriptomic Modulators during Osteogenic Differentiation of Human Embryonic Stem Cells	17
Integrative Proteogenomics Using ProteomeGenerator2	17
Meta4P: A User-Friendly Tool to Parse Label-Free Quantitative Metaproteomic Data and Taxonomic/Functional Annotations	17
Multi-Omics Study Reveals Nc886/vtRNA2-1 as a Positive Regulator of Prostate Cancer Cell Immunity	17
Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion	17
GlycoTCFM: Glycoproteomics Based on Two Complementary Fragmentation Methods Reveals Distinctive O-Glycosylation in Human Sperm and Seminal Plasma	17
A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry	17
Simultaneous Polar Metabolite and N-Glycan Extraction Workflow for Joint-Omics Analysis: A Synergistic Approach for Novel Insights into Diseases	17
Analysis of the Proteomic Profile in Serum of Irradiated Nonhuman Primates Treated with Ex-Rad, a Radiation Medical Countermeasure	17
Detecting Human Contaminant Genetically Variant Peptides in Nonhuman Samples	17

Differential Proteomic Profiling at Different Phases of Dengue Infection: An Intricate Insight from Proteins to Pathogenesis	17
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss	17
The O-Glycome of Human Nigrostriatal Tissue and Its Alteration in Parkinson’s Disease	17
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	17
Understanding the Relationship between Intrinsic Cardiorespiratory Fitness and Serum and Skeletal Muscle Metabolomics Profile	17
Preparative Electrophoresis for HDL Particle Size Separation and Intact-Mass Apolipoprotein Proteoform Analysis	16
Vocabulary Matters: An Annotation Pipeline and Four Deep Learning Algorithms for Enzyme Named Entity Recognition	16
High-Throughput Detection of an Alkaloidal Plant Metabolome in Plant Extracts Using LC-ESI-QTOF-MS	16
Proteomics-Based Approach Reveals the Involvement of SERPINB9 in Recurrent and Relapsed Multiple Myeloma	16
Exploiting pglB Oligosaccharyltransferase-Positive and -Negative Campylobacter jejuni and a Multiprotease Digestion Strategy to Identify Novel Sites Modified by N-Linked Protein Glycosyl	16
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms	16
Use of Proteomics for Dietary Reconstruction: A Case Study Using Animal Teeth from Ancient Mesopotamia	16
Discovery and Verification of Sjögren’s Syndrome Protein Biomarkers in Tears by Targeted LC-MRM	16
Onto Grid Purification and 3D Reconstruction of Protein Complexes Using Matrix-Landing Native Mass Spectrometry	16
A SARS-CoV-2 Peptide Spectral Library Enables Rapid, Sensitive Identification of Virus Peptides in Complex Biological Samples	16
Genetic and Environmental Contributions to Variation in the Stable Urinary NMR Metabolome over Time: A Classic Twin Study	16
The Proteomic Landscape of Monocytes in Response to Colorectal Cancer Cells	16
Disruptive Effects of Resveratrol on a Bacterial Pathogen of Beans	16
Machine Learning Reveals Serum Glycopatterns as Potential Biomarkers for the Diagnosis of Nonalcoholic Fatty Liver Disease (NAFLD)	16
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development	16
Quantitative Assessment of SARS-CoV-2 Virus in Nasopharyngeal Swabs Stored in Transport Medium by a Straightforward LC-MS/MS Assay Targeting Nucleocapsid, Membrane, and Spike Proteins	16
IreK-Mediated, Cell Wall-Protective Phosphorylation in Enterococcus faecalis	15
Reproducible Determination of High-Density Lipoprotein Proteotypes	15
Evaluation of Volumetric Absorptive Microsampling and Mass Spectrometry Data-Independent Acquisition of Hemoglobin-Related Clinical Markers	15
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	15
Repeat-Enhancing Featured Ion-Guided Stoichiometry for Identification and Quantification of Direct Infusion Proteome	15
Identification of Microproteins in Saccharomyces cerevisiae under Different Stress Conditions	15
Edwardsiella tarda Attenuates Virulence upon Oxytetracycline Resistance	15
Phosphoproteome and Biological Evidence Revealed Abnormal Calcium Homeostasis in Keloid Fibroblasts and Induction of Aberrant Platelet Aggregation	15
Functional Proteomics Analysis of Norfloxacin-Resistant Edwardsiella tarda	15
Comprehensive Lipidomic Workflow for Multicohort Population Phenotyping Using Stable Isotope Dilution Targeted Liquid Chromatography-Mass Spectrometry	15
Proximity Proteomics Has Potential for Extracellular Vesicle Identification	15
Identification, Measurement, and Assessment of the Clinical Utility of Human Pancreatic Polypeptide by Liquid Chromatography–Tandem Mass Spectrometry	15
Automation to Enable High-Throughput Chemical Proteomics	15
Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2	15
Impact of Systemic versus Intratympanic Dexamethasone Administration on the Perilymph Proteome	14
Deep Time Course Proteomics of SARS-CoV- and SARS-CoV-2-Infected Human Lung Epithelial Cells (Calu-3) Reveals Strong Induction of Interferon-Stimulated Gene Expression by SARS-CoV-2 in Contrast to SAR	14
Exercise Alleviates Behavioral Disorders but Shapes Brain Metabolism of APP/PS1 Mice in a Region- and Exercise-Specific Manner	14
Divergent Antibody Repertoires Found for Omicron versus Wuhan SARS-CoV-2 Strains Using Ig-MS	14
Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer	14
Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells	14
Executable Network Models of Integrated Multiomics Data	14
CIMAGE2.0: An Expanded Tool for Quantitative Analysis of Activity-Based Protein Profiling (ABPP) Data	14
Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes	14
High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample Processing	14
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	14
Shared Proteins and Pathways of Cardiovascular and Cognitive Diseases: Relation to Vascular Cognitive Impairment	14
Organ-Based Proteome and Post-Translational Modification Profiling of a Widely Cultivated Tropical Water Fish, Labeo rohita	14
Optimizing Spectronaut Search Parameters to Improve Data Quality with Minimal Proteome Coverage Reductions in DIA Analyses of Heterogeneous Samples	14
Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows	14
Prioritization of the Secondary Metabolites for the Rapid Annotation Based on Liquid Chromatography-High Resolution Mass Spectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata	14
Nontargeted Serum Lipid Profiling of Nonalcoholic Steatohepatitis by Multisegment Injection–Nonaqueous Capillary Electrophoresis–Mass Spectrometry: A Multiplexed Separation Platform for Resolving Ioni	14
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	14
Machine Learning in Proteomics and Metabolomics	14
Driving Single Cell Proteomics Forward with Innovation	13
Discovery Proteomics for COVID-19: Where We Are Now	13
Exosomes Derived from Bone Marrow Mesenchymal Stem Cells Alleviate Rheumatoid Arthritis Symptoms via Shuttling Proteins	13
Metabolomics Study Revealing Purines as Potential Diagnostic Biomarkers of Acute Respiratory Distress Syndrome in Patients with Community─Acquired Pneumonia	13
Plasma Olink Proteomics Identifies CCL20 as a Novel Predictive and Diagnostic Inflammatory Marker for Preeclampsia	13
Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response	13
Optimized Workflow for Enrichment and Identification of Biotinylated Peptides Using Tamavidin 2-REV for BioID and Cell Surface Proteomics	13
Confident Identification of Citrullination and Carbamylation Assisted by Peptide Retention Time Prediction	13
Deciphering the Properties and Functions of Glycoproteins Using Quantitative Proteomics	13
Unphosphorylated Form of the PAQosome Core Subunit RPAP3 Binds Ribosomal Preassembly Complexes to Modulate Ribosome Biogenesis	13
Optimization of Ultrafast Proteomics Using an LC-Quadrupole-Orbitrap Mass Spectrometer with Data-Independent Acquisition	13
Quantification of Serum Metabolites in Early Colorectal Adenomas Using Isobaric Labeling Mass Spectrometry	13
Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics	13
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling	13
Evaluation of Biological Mechanisms of Eucommiae Folium in Hypertensive Kidney Injury by Integration of Untargeted Metabolomics and Network Pharmacology	13
Representing and Comparing Site-Specific Glycan Abundance Distributions of Glycoproteins	13
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems	13
Enhancement of Proteome Coverage by Ion Mobility Fractionation Coupled to PASEF on a TIMS–QTOF Instrument	13
Hepatic Metabolic Profiling of Lifelong Exercise Training Rats	13
Protein Contaminants Matter: Building Universal Protein Contaminant Libraries for DDA and DIA Proteomics	13
Multi-protease Approach for the Improved Identification and Molecular Characterization of Small Proteins and Short Open Reading Frame-Encoded Peptides	13
Prevaccination Glycan Markers of Response to an Influenza Vaccine Implicate the Complement Pathway	13
Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms	13
Systematic Identification of Microproteins during the Development of Drosophila melanogaster	13
Comprehensive Urinary Proteome Profiling Analysis Identifies Diagnosis and Relapse Surveillance Biomarkers for Bladder Cancer	13
Proteomics Analysis of Plasma-Derived Exosomes Unveils the Aberrant Complement and Coagulation Cascades in Dermatomyositis/Polymyositis	13
Comparative Evaluation of MaxQuant and Proteome Discoverer MS1-Based Protein Quantification Tools	12
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline	12
Identification and Quantification of Human Relaxin Proteins by Immunoaffinity-Mass Spectrometry	12
MALDI(+) FT-ICR Mass Spectrometry (MS) Combined with Machine Learning toward Saliva-Based Diagnostic Screening for COVID-19	12
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	12
DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics	12
Differential Proteome Profiling Analysis under Pesticide Stress by the Use of a Nano-UHPLC-MS/MS Untargeted Proteomic-Based Approach on a 3D-Developed Neurospheroid Model: Identification of Protein In	12
Top-Down Proteomics and the Challenges of True Proteoform Characterization	12
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	12
A Simple Optimization Workflow to Enable Precise and Accurate Imputation of Missing Values in Proteomic Data Sets	12
TMTpro-18plex: The Expanded and Complete Set of TMTpro Reagents for Sample Multiplexing	12
Serum Bile Acid Metabolites Predict the Therapeutic Effect of Mesalazine in Patients with Ulcerative Colitis	12
Urinary Volatilomics Unveils a Candidate Biomarker Panel for Noninvasive Detection of Clear Cell Renal Cell Carcinoma	12
Comprehensive Serum Lipidomics for Detecting Incipient Dementia in Parkinson’s Disease	12
Issue Publication Information	12