Journal of Proteome Research

Article	Citations
Margaret Dayhoff: A Personal Memoir	289
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	213
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	206
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	204
Longitudinal Proteomic Changes in HCT 116 Colon Cancer Spheroids During Growth	120
An Improved Metabolomics Workflow Enables Untargeted Data Acquisition and Targeted Data Analysis Using Liquid Chromatography–Mass Spectrometry	112
Issue Publication Information	105
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	104
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	99
Tissue-, Blood-, and Urine-Based Proteomics Changes of Different Endometrial Receptivity Status in Patients after Fertility-Sparing Treatment of Atypical Endometrial Hyperplasia or Endometrial Cancer	97
Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide	90
Immunoproteomic Identification of Scedosporium boydii Antigens with Potential Diagnostic Interest in Cystic Fibrosis Patients	90
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	82
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	76
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis	69
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	68
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	66
Data-Independent Acquisition (DIA)-Based Label-Free Redox Proteomics (DIALRP) Identifies Prominent Cysteine Oxidations in Translation Machinery in Prostate Cancer Cells Under Oxidative Stress	52
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling	50
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	49
Issue Editorial Masthead	49
Lipidomic Network Analysis Reveals Amyloid-β-Induced Lysosomal Lipid Accumulation in the Cortex and Hippocampus of 5xFAD Mice	48
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	48
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	48
Proteomic Profiling of Plasma Extracellular Vesicles Combined with Multivariate Modeling Identified Potential Biomarkers for Distinguishing Benign Pulmonary Nodules from Early-Stage Lung Adenocarcinom	47

Metabolomic Signature in Men with Central Serous Chorioretinopathy Using UHPLC-MS	47
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	44
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	44
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	42
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	42
Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards	42
Enhanced Proteomics Analysis with a Novel Recombinant Chymotrypsin Analogue Engineered for High Cleavage Specificity	42
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	41
Pancreatic Digestive Enzyme Dispersion into Human Organs Outside the Gastrointestinal Tract	41
Discovery of Oogenesis Biomarkers from Mouse Oocytes Using a Single-Cell Proteomics Approach	40
Back to the Future, from a Departing Editor	38
1H NMR Reveals Predictive Metabolic Signatures of Response to RMP1–14 Treatment in the Plasma of Tumor-Bearing Mice	38
Issue Editorial Masthead	37
Issue Publication Information	37
Issue Editorial Masthead	37
Alignment and Analysis of a Disparately Acquired Multibatch Metabolomics Study of Maternal Pregnancy Samples	36
Issue Editorial Masthead	36
Automated High-Throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent Acquisition	34
Identification and Validation of Novel Biomarkers for Unstable Angina Using Olink Proteomics	34
Oral Squamous Cell Carcinoma Lipid Evaluation in Gingiva Tissue Stored in TRIzol via Shotgun Lipidomics and MALDI Mass Spectrometry Imaging	34
Peptide Mass Fingerprinting of South American Xenarthrans: A New Resource for Zooarcheology and Palaeontology	33
Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms	33
Molecular Mechanisms of Acanthamoeba castellanii Response to Different Sources of Oxidative Stress	32
Considering Measurement Time and Depth in diaPASEF Plasma Proteomics	32
Defining Alzheimer’s Disease through Proteomic CSF Profiling	31
Spatial Venomics─Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging	30
Analysis of the Porcine Reproductive and Respiratory Syndrome Virus Nucleocapsid Interactome	30
CHalf: Folding Stability Made Simple	30
EPURISp: Combining Enzymatic Digestion, Ultrafiltration, and Rapid In Situ Sample Purification for High-performance Proteomics	29
Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles	29
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms	28
Machine Learning-Enhanced Cerebrospinal Fluid N-Glycome for the Diagnosis and Prognosis of Primary Central Nervous System Lymphoma	28
Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies	28
Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer	28
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses	28
Integration of Metabolomics, Lipidomics, and Proteomics Reveals the Metabolic Characterization of Nonalcoholic Steatohepatitis	27
Categorization and Characterization of Snake Venom Variability through Intact Toxin Analysis by Mass Spectrometry	27
Plasma Olink Proteomics Reveals Novel Biomarkers for Prediction and Diagnosis in Dilated Cardiomyopathy with Heart Failure	27
A Sensor-to-Initiation Proteome Architecture Governing Regeneration Commitment in Turritopsis Species	26
Quantifying the ∼75–95% of Peptides in DIA-MS Data Sets that Were Not Previously Quantified	26
Dysregulation of Amino Acid, Lipid, and Acylpyruvate Metabolism in Idiopathic Intracranial Hypertension: A Non-targeted Case Control and Longitudinal Metabolomic Study	26
Pan-Cell Death Protein Signature as a Novel Diagnostic and Prognostic Biomarker for Intracerebral Hemorrhage	26
Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development	26
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies	26
Analysis of Vascular Smooth Muscle Cells from Thoracic Aortic Aneurysms Reveals DNA Damage and Cell Cycle Arrest as Hallmarks in Bicuspid Aortic Valve Patients	25
Novel PPT+SEC Workflow for High-Sensitivity Extracellular Vesicle Proteomics from Cell Media	25
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data	25
Issue Editorial Masthead	25
Open-Source and FAIR Research Software for Proteomics	25
Issue Editorial Masthead	24

Issue Editorial Masthead	24
Quantitative Proteomics Reveal the Mechanism of MiR-138–5p Suppressing Cervical Cancer via Targeting ZNF385A	23
Whole Blood Metabolome Profiling for Stratification of Type 2 Diabetes Patients and Identification of Biomarkers for Diabetic Kidney Disease in Asian Indian Adults	23
BrainProt v3.0: An Integrative and Simplified Omics-Based Knowledge-Base About the Human Brain and Its Associated Diseases	23
Electrochemically Etched Tapered-Tip Stainless-Steel Electrospray-Ionization Emitters for Capillary Electrophoresis–Mass Spectrometry	23
Tbx18 Orchestrates Cytostructural Transdifferentiation of Cardiomyocytes to Pacemaker Cells by Recruiting the Epithelial–Mesenchymal Transition Program	23
Tissue Mild Extraction Enriches Membrane, Cytoplasmic, and Secreted Proteomes for Biomarker Discovery	23
Proteomics Analysis of Knee Subchondral Bone Identifies Differentially Expressed Proteins Associated with Osteoarthritis	22
Multiomics Insights into the Mechanism and Enhanced Efficacy of Tumor Treating Fields (TTFields) Therapy in Glioblastoma	22
Comparative Tear Fluid Proteomics to Explore Treatment Responsiveness in Diabetic Macular Edema: A Pilot Study	22
Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 1	22
HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space	22
Global Analysis of the Acetylome in Cisplatin-Induced Renal Fibrosis in C57BL/6 Mice	22
Multiplex Assay to Determine Acute Phase Proteins in Modified Live PRRSV Vaccinated Pigs	22
Proteomic and Transcriptomic Analyses Define Molecular Subtypes, Identify Biomarkers, and Suggest Potential Therapeutic Agent for Early-Stage HBV-Related Hepatocellular Carcinoma	22
Multicompartment Quantitative Proteomics Revealing Potential Mechanisms Underlying the Treatment Effects of Mesenchymal-Derived Extracellular Vesicles in a Monkey Model of Cortical Injury	22
Proteomics of Serum Samples for the Exploration of the Pathological Mechanism of Obstetric Antiphospholipid Syndrome	22
EIF4G2 Promotes Hepatocellular Carcinoma Progression via IRES-dependent PLEKHA1 Translation Regulation	21
Untargeted Metabolomics Analysis of Gingival Tissue in Patients with Severe Periodontitis	21
Chronic Exposure to Petroleum-Derived Hydrocarbons Alters Human Skin Microbiome and Metabolome Profiles: A Pilot Study	21
Blood Matrices and Sample Preparation Influence Blood Marker Discovery	21
Quantitative Proteomics Reveal the Inherent Antibiotic Resistance Mechanism against Norfloxacin Resistance in Aeromonas hydrophila	21
PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology	21
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics	21
Cerebrospinal Fluid Protein Biomarker Discovery in CLN3	21
Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome	21
De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast	20
Development of a Simple and Stable NanoESI Spray System Using Suction Wind from the MS Inlet	20
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics	20
PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors	20
HyPep: An Open-Source Software for Identification and Discovery of Neuropeptides Using Sequence Homology Search	20
Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels	20
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics	20
Comprehensive Serum Proteomics Uncovers Epigenetic and Inflammatory Pathways Underlying Primary Open-Angle Glaucoma	20
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics	20
Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM	19
Quantitative Phosphoproteomics and Acetylomics of Safranal Anticancer Effects in Triple-Negative Breast Cancer Cells	19
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation	19
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD	19
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control	19
Identification of LMAN1- and SURF4-Dependent Secretory Cargoes	19
Combined Quantitative and Qualitative Statistical Analyses Improve Benzodiazepine Target Discovery in Label-free Affinity-Based Protein Profiling Data	19
Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics	19
A Plasma Proteomics-Based Model for Identifying the Risk of Postpartum Depression Using Machine Learning	19
Plasma Proteomics to Identify Drug Targets and Potential Drugs for Retinal Artery Occlusion: An Integrated Analysis in the UK Biobank	19
Identification of FGG as a Biomarker in Early Gastric Cancer via Tissue Proteomics and Clinical Verification	19
One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles	19
Quantitative Proteomics for the Development and Manufacturing of Human-Induced Pluripotent Stem Cell-Derived Neural Stem Cells Using Data-Independent Acquisition Mass Spectrometry	19
Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples	19
Serum N-Glycan Profiling Identifies Candidate Glycan Biomarkers for Early Detection and Prediction of Alzheimer’s Disease	18
How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate	18
Identification of Blood Biomarkers in Ischemic Stroke by Integrated Analysis of Metabolomics and Proteomics	18
Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine	18
Human-Derived Proteome Characterization of Tongue Coating in Colorectal Cancer	18
Software-Assisted Data Processing Workflow for Intact Glycoprotein Mass Spectrometry	18
Exploring Biomarkers in Type 2 Diabetes Mellitus versus Normoglycemia Identified through High-Throughput Proteomics: A Systematic Review and Meta-Analysis	18
The Combination of Quantitative Proteomics and Systems Genetics Analysis Reveals that PTN Is Associated with Sleep-Loss-Induced Cognitive Impairment	18
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions	18
MGVB: a New Proteomics Toolset for Fast and Efficient Data Analysis	17
Proteomic Profiling of Human Synovial Fluid Reveals AKR1C1 as a Biomarker of Osteoarthritis Severity	17
Exploring the Effects of Probiotic Treatment on Urinary and Serum Metabolic Profiles in Healthy Individuals	17
Issue Publication Information	17
Issue Editorial Masthead	17
Issue Editorial Masthead	17
Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries	17
Impact of Static Myoblast Loading on Protein Secretion Linked to Tenocyte Migration	17
Integrative Transcriptomic and Proteomic Profiling Defines Secretory and Immune Related Subtypes in Pancreatic Ductal Adenocarcinoma	17
Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila	16
1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC–MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins	16
AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function	16
Size-Dependent Separation of Extracellular Vesicle Subtypes with Exodisc Enabling Proteomic Analysis in Prostate Cancer	16
Impact of Internal Fragments on Top-Down Analysis of Intact Proteins by 193 nm UVPD	16
Metabolic Signature of a Healthy Lifestyle and the Risk of MASLD and Other Chronic Liver Diseases: An Observational and Mendelian Randomization Study	16
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex	16
Multiplet-Assisted Peak Alignment for 1H NMR-Based Metabolomics	16
Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma	16
Designing a Comparative Proteomics Experiment: Retention-Time Alignment and Imputation Algorithms Affect Statistical Comparisons between Samples	16
Low-Invasive Sampling Method with Tape-Disc Sampling for the Taxonomic Identification of Archeological and Paleontological Bones by Proteomics	16
Mitochondrial Metabolic Reprogramming along with NRF2/KEAP1-Mediated Antioxidant Mechanisms Drive Temozolomide Resistance in Glioblastoma Multiforme	16
Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy	16

Integrative Analysis of Fucosylated Tetra Glycoforms in Hepatocellular Carcinoma: A NanoLC-PRM-MS/MS and Machine Learning Approach	16
S-Palmitoylation during Retinoic Acid-Induced Neuronal Differentiation of SH-SY5Y Neuroblastoma Cells	16
Precision-Engineered Nano-Electrospray Emitters Enhance Ionization Efficiency for Trap-Assisted Direct Infusion Mass Spectrometry: Application in Plasma Alzheimer’s Disease Proteomics	16
Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases	16
N-Terminomic Identification of Intracellular MMP-2 Substrates in Cardiac Tissue	16
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags	16
Storing Mass-Spectrometry Data in Simple Databases Enables Flexible and Intuitive Exploration without Time or Space Penalties	16
Data-Independent Acquisition-Based Quantitative Proteomics for Pairwise Comparison of Serum and Plasma	15
Novel Deep Eutectic Solvent-Based Protein Extraction Method for Pottery Residues and Archeological Implications	15
Serum N-Glycan Signatures as Potential Biomarkers for the Detection and Monitoring of IgG4-Related Disease	15
PPI-Affinity: A Web Tool for the Prediction and Optimization of Protein–Peptide and Protein–Protein Binding Affinity	15
Issue Editorial Masthead	15
Subchronic Graphene Exposure Reshapes Skin Cell Metabolism	15
Fasciola hepatica Cathepsin L Zymogens: Immuno-Proteomic Evidence for Highly Immunogenic Zymogen-Specific Conformational Epitopes to Support Diagnostics Development	15
LineageFilter: Improved Proteotyping of Complex Samples Using Metaproteomics and Machine Learning	15
Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics	15
Valuable Contributions and Lessons Learned from Proteomics and Metabolomics Studies of COVID-19	15
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems	15
Targeted Mass Spectrometry of Longitudinal Patient Sera Reveals LTBP1 as a Potential Surveillance Biomarker for High-Grade Serous Ovarian Carcinoma	15
Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity	15
Issue Publication Information	15
Metabolomics Meets Clinics: A Multivariate Analysis of Plasma and Urine Metabolic Signatures in Pulmonary Arterial Hypertension	15
Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod	15
NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning	15
IL18R1-Related Molecules as Biomarkers for Asthma Severity and Prognostic Markers for Idiopathic Pulmonary Fibrosis	15
Automated Mag-Net Enrichment Unlocks Deep and Cost-Effective LC–MS Plasma Proteomics	15
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale	15
LC-Orbitrap HRMS-Based Proteomics Reveals Novel Mitochondrial Dynamics Regulatory Proteins Associated with RasV12-Induced Glioblastoma (GBM) of Drosophila	15
Low-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis	15
Nonsevere Burn Induces a Prolonged Systemic Metabolic Phenotype Indicative of a Persistent Inflammatory Response Postinjury	15
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies	15
Issue Editorial Masthead	14
Proteomic Profiling of Non-Muscle Invasive Bladder Cancer Reveals Potential Biomarkers for Recurrence and Progression Risk	14
The Escherichia coli PeptideAtlas Build: Characterizing the Observed Escherichia coli Pan-Proteome and Its	14
OCIAD2 Promotes Cancer Progression via Metabolic Reprogramming in Lung Adenocarcinoma	14
Placental Proteomics Reveals an Elevated Level of Aldo-Keto Reductase 1-B1, Highlighting Its Potential Role in Spontaneous Preterm Birth	14
Analysis of Brain Protein Stability Changes in a Mouse Model of Alzheimer’s Disease	14
Magnetic Bead-Based Workflow for Sensitive and Streamlined Cell Surface Proteomics	14
Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied by Fibrosis in Human Stroma	14
Proteomics and Metabolic Characteristics of Boar Seminal Plasma Extracellular Vesicles Reveal Biomarker Candidates Related to Sperm Motility	14
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi	14
Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology	14
Novel Diagnostic Biomarkers for High-Grade Serous Ovarian Cancer Uncovered by Data-Independent Acquisition Mass Spectrometry	14
Machine Learning-Based Multi-Omics Integration for Identification of Hepatocellular Carcinoma Biomarkers in an Egyptian Cohort	14
Dynamic Responses of Chromosome-Binding Protein Complexes to Meiotic Prophase I of Mouse Spermatocyte	14
Dynamic Changes in Lymphocyte Subsets and Inflammation-Immune-Related Proteins in Patients with Thyroid Papillary Carcinoma before and after Radioactive Iodine Therapy	14
Discovering Biomarkers for Asymptomatic Tuberculosis via Olink Proteomics and Machine Learning	14
Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre	14
Exosomal Proteome from Hepatocellular Carcinoma Patient-Derived Xenograft Mice Serves as Identity of Liver Cancer	14
High-Coverage Metabolomics Reveals Gut Microbiota-Related Metabolic Traits of Type-2 Diabetes in Serum	14
Correction to “The Curiosity of the Young”	14
Impact of Local Air Pressure on Ion Mobilities and Data Consistency in diaPASEF-Based High Throughput Proteomics	13
Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing	13
Technical Evaluation of Plasma Proteomics Technologies	13
Phosphoproteomics Analysis of Insulin-like Growth Factor-1 Signaling in Neuronal Cells	13
Plasma Proteomic High-Performance Biomarkers for Early Diagnosis of Colorectal Cancer	13
The Multiomics Landscape of Plasma-Derived Small Extracellular Vesicles during the Development of HPV+ Cervical Cancer	13
Quantitative Proteomics Investigating the Molecular Responses of Aeromonas hydrophila to Zinc Stress	13
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase	13
SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides	13
Optimizing a Diagnostic Model of Periodontitis by Using Targeted Proteomics	13
Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms	13
Coupling Proximity Biotinylation with Genomic Targeting to Characterize Locus-Specific Changes in Chromatin Environments	13
Single Cell Analysis of Proteoforms	13
Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133	13
Spatial Proteomic Profiling of Colorectal Cancer Revealed Its Tumor Microenvironment Heterogeneity	13
A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data	13
Untargeted Metabolomic and Lipidomic Profiling in Cystic Fibrosis Patients Using UPLC-QTOF-MS	13
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments	13
O-GlcNAcylation: Sagacious Orchestrator of Bone-, Joint-, and Spine-Related Diseases	13
Analysis of Protein–Protein Interactions in Chlamydomonas reinhardtii CC125 by Co-Fractionation Mass Spectrometry	13
Proteomics Platform Reveals Broad-Spectrum Nanobodies for SARS-CoV-2 Variant Neutralization	13
Decoding the Impact of Isolation Window Selection and QuantUMS Filtering in DIA-NN for DIA Quantification of Peptides and Proteins	13
Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics	13
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins	13
Evaluation of a Proteomics-Guided Protein Signature for Breast Cancer Detection in Breast Tissue	13
Multilayered Regulatory Dynamics of p53 Mutations and Platinum Resistance in Ovarian Cancer	13
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA	13
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data	13
Accelerating Proteomics Using Broad Specificity Proteases	13
Non-Small Cell Lung Cancer Detection and Subtyping by UPLC-HRMS-Based Tissue Metabolomics	13
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics	13
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues	13
Correction to “Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells”	12
Efficient Indexing of Peptides for Database Search Using Tide	12
Proximity Proteomics and Biochemical Analysis Reveal a Noncanonical Function for UFM1-Specific Protease 1 in the p62 Body Formation	12
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format	12
Time-of-Day Differences in the Plasma N -Glycome of Normal and Obese Mice and the Effects of Dapagliflozin Administered in the Morning or at Night	12
A Sensitive, Specific, and Cost-Effective Lauroylation-Assisted Workflow for Profiling Peptide-Level Protease Specificity Using Proteomic Identification of Cleavage Sites (PICS), with Applicability to	12
Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development	12
Optimized and Robust Workflow for Quantifying the Canonical Histone Ubiquitination Marks H2AK119ub and H2BK120ub by LC–MS/MS	12
Physiological Temperature and Osmotic Changes Drive Dynamic Proteome Alterations in the Leptospiral Outer Membrane and Enhance Protein Export Systems	12
High-Throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF	12
TAG-PL: A Universal Proximity Labeling Platform for Mapping Mitochondrial Proteomes and Organelle Interactions under Stress	12
A High-Resolution Subcellular Map of Proteins in Cells with Motile Cilia	12