OOIR: Observatory of International Research

Papers

(The median citation count of Journal of Proteome Research is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	182
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	178
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	158
Margaret Dayhoff: A Personal Memoir	150
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	134
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	98
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	79
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	75
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development	74
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	72
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model	67
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis	66
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	64
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	57
Lipidomic Network Analysis Reveals Amyloid-β-Induced Lysosomal Lipid Accumulation in the Cortex and Hippocampus of 5xFAD Mice	53
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling	53
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	53
Issue Publication Information	52
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	51
Longitudinal Proteomic Changes in HCT 116 Colon Cancer Spheroids During Growth	51
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	48
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	46
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	43
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	41
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	40

Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide	38
An Improved Metabolomics Workflow Enables Untargeted Data Acquisition and Targeted Data Analysis Using Liquid Chromatography–Mass Spectrometry	38
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	37
Data-Independent Acquisition (DIA)-Based Label-Free Redox Proteomics (DIALRP) Identifies Prominent Cysteine Oxidations in Translation Machinery in Prostate Cancer Cells Under Oxidative Stress	37
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	37
Metabolomic Signature in Men with Central Serous Chorioretinopathy Using UHPLC-MS	36
Automated High-Throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent Acquisition	36
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	36
Novel PPT+SEC Workflow for High-Sensitivity Extracellular Vesicle Proteomics from Cell Media	34
Open-Source and FAIR Research Software for Proteomics	34
Analysis of Vascular Smooth Muscle Cells from Thoracic Aortic Aneurysms Reveals DNA Damage and Cell Cycle Arrest as Hallmarks in Bicuspid Aortic Valve Patients	34
Defining Alzheimer’s Disease through Proteomic CSF Profiling	33
C_Half: Folding Stability Made Simple	33
Metabolomics Analysis of the Effect of GAT-2 Deficiency on Th1 Cells in Mice	33
Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer	33
Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies	31
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses	30
EPURISp: Combining Enzymatic Digestion, Ultrafiltration, and Rapid In Situ Sample Purification for High-performance Proteomics	30
Integration of Metabolomics, Lipidomics, and Proteomics Reveals the Metabolic Characterization of Nonalcoholic Steatohepatitis	30
Dysregulation of Amino Acid, Lipid, and Acylpyruvate Metabolism in Idiopathic Intracranial Hypertension: A Non-targeted Case Control and Longitudinal Metabolomic Study	29
Oral Squamous Cell Carcinoma Lipid Evaluation in Gingiva Tissue Stored in TRIzol via Shotgun Lipidomics and MALDI Mass Spectrometry Imaging	29
Discovery of Oogenesis Biomarkers from Mouse Oocytes Using a Single-Cell Proteomics Approach	28
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data	28
Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms	28
Scents and Flavors of Mass Spectrometry in Latin America	27
Back to the Future, from a Departing Editor	27
Machine Learning-Enhanced Cerebrospinal Fluid N-Glycome for the Diagnosis and Prognosis of Primary Central Nervous System Lymphoma	27
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms	26
Spatial Venomics─Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging	26
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies	26
Comprehensive Identification of Regulatory Protein Networks	26
Alignment and Analysis of a Disparately Acquired Multibatch Metabolomics Study of Maternal Pregnancy Samples	26
Issue Editorial Masthead	25
Molecular Mechanisms of Acanthamoeba castellanii Response to Different Sources of Oxidative Stress	25
Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development	25
¹H NMR Reveals Predictive Metabolic Signatures of Response to RMP1–14 Treatment in the Plasma of Tumor-Bearing Mice	25
Issue Editorial Masthead	25
Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles	25
Issue Editorial Masthead	25
Issue Publication Information	25
Categorization and Characterization of Snake Venom Variability through Intact Toxin Analysis by Mass Spectrometry	25
MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses	25
Plasma Olink Proteomics Reveals Novel Biomarkers for Prediction and Diagnosis in Dilated Cardiomyopathy with Heart Failure	24
Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome	24
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities	24
A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell Therapies	24
Chronic Exposure to Petroleum-Derived Hydrocarbons Alters Human Skin Microbiome and Metabolome Profiles: A Pilot Study	24
Identification of LMAN1- and SURF4-Dependent Secretory Cargoes	24
Untargeted Metabolomics Analysis of Gingival Tissue in Patients with Severe Periodontitis	23
PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors	23

Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples	23
Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM	23
Human-Derived Proteome Characterization of Tongue Coating in Colorectal Cancer	22
HLA Allele-Specific Quantitative Profiling of Type 1 Diabetic B Lymphocyte Immunopeptidome	22
Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels	22
Proteomics Analysis of Knee Subchondral Bone Identifies Differentially Expressed Proteins Associated with Osteoarthritis	22
Multiplex Assay to Determine Acute Phase Proteins in Modified Live PRRSV Vaccinated Pigs	22
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics	21
De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast	21
Potential Use of Serum Proteomics for Monitoring COVID-19 Progression to Complement RT-PCR Detection	21
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation	21
Quantitative Proteomics Reveal the Mechanism of MiR-138–5p Suppressing Cervical Cancer via Targeting ZNF385A	21
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control	21
Quantitative Phosphoproteomics and Acetylomics of Safranal Anticancer Effects in Triple-Negative Breast Cancer Cells	21
Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine	21
Electrochemically Etched Tapered-Tip Stainless-Steel Electrospray-Ionization Emitters for Capillary Electrophoresis–Mass Spectrometry	21
ClusterSheep: A Graphics Processing Unit-Accelerated Software Tool for Large-Scale Clustering of Tandem Mass Spectra from Shotgun Proteomics	21
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD	21
A Plasma Proteomics-Based Model for Identifying the Risk of Postpartum Depression Using Machine Learning	20
HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space	20
Issue Editorial Masthead	20
Cerebrospinal Fluid Protein Biomarker Discovery in CLN3	20
Issue Editorial Masthead	20
High Throughput UHPLC-MS-Based Lipidomics Using Vacuum Jacketed Columns	20
Insights into the Differential Preservation of Bone Proteomes in Inhumed and Entombed Cadavers from Italian Forensic Caseworks	20
Issue Editorial Masthead	20
HyPep: An Open-Source Software for Identification and Discovery of Neuropeptides Using Sequence Homology Search	19
MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics	19
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics	19
Whole Blood Metabolome Profiling for Stratification of Type 2 Diabetes Patients and Identification of Biomarkers for Diabetic Kidney Disease in Asian Indian Adults	19
One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles	19
Plasma Proteomics to Identify Drug Targets and Potential Drugs for Retinal Artery Occlusion: An Integrated Analysis in the UK Biobank	19
Identification of Blood Biomarkers in Ischemic Stroke by Integrated Analysis of Metabolomics and Proteomics	19
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics	18
Comparative Tear Fluid Proteomics to Explore Treatment Responsiveness in Diabetic Macular Edema: A Pilot Study	18
Identification of FGG as a Biomarker in Early Gastric Cancer via Tissue Proteomics and Clinical Verification	18
Tbx18 Orchestrates Cytostructural Transdifferentiation of Cardiomyocytes to Pacemaker Cells by Recruiting the Epithelial–Mesenchymal Transition Program	18
Proteomics of Serum Samples for the Exploration of the Pathological Mechanism of Obstetric Antiphospholipid Syndrome	18
Quantitative Proteomics Reveal the Inherent Antibiotic Resistance Mechanism against Norfloxacin Resistance in Aeromonas hydrophila	18
Tissue Mild Extraction Enriches Membrane, Cytoplasmic, and Secreted Proteomes for Biomarker Discovery	18
Quantitative Proteomics for the Development and Manufacturing of Human-Induced Pluripotent Stem Cell-Derived Neural Stem Cells Using Data-Independent Acquisition Mass Spectrometry	18
NMR Metabolomics Assessment of Osteogenic Differentiation of Adipose-Tissue-Derived Mesenchymal Stem Cells	18
The Combination of Quantitative Proteomics and Systems Genetics Analysis Reveals that PTN Is Associated with Sleep-Loss-Induced Cognitive Impairment	18
Serum N-Glycan Profiling Identifies Candidate Glycan Biomarkers for Early Detection and Prediction of Alzheimer’s Disease	18
EIF4G2 Promotes Hepatocellular Carcinoma Progression via IRES-dependent PLEKHA1 Translation Regulation	17
Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 1	17
Exploring the Effects of Probiotic Treatment on Urinary and Serum Metabolic Profiles in Healthy Individuals	17
Multiplet-Assisted Peak Alignment for ¹H NMR-Based Metabolomics	17
Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy	17
Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics	17
Multiomics Insights into the Mechanism and Enhanced Efficacy of Tumor Treating Fields (TTFields) Therapy in Glioblastoma	17
Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity	17
Software-Assisted Data Processing Workflow for Intact Glycoprotein Mass Spectrometry	17
Valuable Contributions and Lessons Learned from Proteomics and Metabolomics Studies of COVID-19	17
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics	17
Development of a Simple and Stable NanoESI Spray System Using Suction Wind from the MS Inlet	17
Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases	17
Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila	17
How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate	17
N-Terminomic Identification of Intracellular MMP-2 Substrates in Cardiac Tissue	16
LineageFilter: Improved Proteotyping of Complex Samples Using Metaproteomics and Machine Learning	16
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies	16
Issue Editorial Masthead	16
MGVB: a New Proteomics Toolset for Fast and Efficient Data Analysis	16
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions	16
Data-Independent Acquisition-Based Quantitative Proteomics for Pairwise Comparison of Serum and Plasma	16
Adaptive Metabolism of Staphylococcus aureus Revealed by Untargeted Metabolomics	16
AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function	16
NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning	16
1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC–MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins	16
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex	16
Precision-Engineered Nano-Electrospray Emitters Enhance Ionization Efficiency for Trap-Assisted Direct Infusion Mass Spectrometry: Application in Plasma Alzheimer’s Disease Proteomics	16
Subchronic Graphene Exposure Reshapes Skin Cell Metabolism	15
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags	15
Impact of Static Myoblast Loading on Protein Secretion Linked to Tenocyte Migration	15
Targeted Mass Spectrometry of Longitudinal Patient Sera Reveals LTBP1 as a Potential Surveillance Biomarker for High-Grade Serous Ovarian Carcinoma	15
Size-Dependent Separation of Extracellular Vesicle Subtypes with Exodisc Enabling Proteomic Analysis in Prostate Cancer	15
PPI-Affinity: A Web Tool for the Prediction and Optimization of Protein–Peptide and Protein–Protein Binding Affinity	15
Novel Deep Eutectic Solvent-Based Protein Extraction Method for Pottery Residues and Archeological Implications	15
Issue Publication Information	15

Ultrahigh-Resolution NMR with Water Signal Suppression for a Deeper Understanding of the Action of Antimetabolic Drugs on Diffuse Large B-Cell Lymphoma	15
Impact of Internal Fragments on Top-Down Analysis of Intact Proteins by 193 nm UVPD	15
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems	15
S-Palmitoylation during Retinoic Acid-Induced Neuronal Differentiation of SH-SY5Y Neuroblastoma Cells	15
Serum N-Glycan Signatures as Potential Biomarkers for the Detection and Monitoring of IgG4-Related Disease	15
Nonsevere Burn Induces a Prolonged Systemic Metabolic Phenotype Indicative of a Persistent Inflammatory Response Postinjury	15
Low-Invasive Sampling Method with Tape-Disc Sampling for the Taxonomic Identification of Archeological and Paleontological Bones by Proteomics	15
Metabolomics Meets Clinics: A Multivariate Analysis of Plasma and Urine Metabolic Signatures in Pulmonary Arterial Hypertension	15
Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma	15
Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries	15
Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics	14
Issue Editorial Masthead	14
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale	14
Evaluation of a Proteomics-Guided Protein Signature for Breast Cancer Detection in Breast Tissue	14
A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data	14
Analysis of Brain Protein Stability Changes in a Mouse Model of Alzheimer’s Disease	14
Low-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis	14
Placental Proteomics Reveals an Elevated Level of Aldo-Keto Reductase 1-B1, Highlighting Its Potential Role in Spontaneous Preterm Birth	14
Fasciola hepatica Cathepsin L Zymogens: Immuno-Proteomic Evidence for Highly Immunogenic Zymogen-Specific Conformational Epitopes to Support Diagnostics Development	14
IL18R1-Related Molecules as Biomarkers for Asthma Severity and Prognostic Markers for Idiopathic Pulmonary Fibrosis	14
Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics	14
Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod	14
Magnetic Bead-Based Workflow for Sensitive and Streamlined Cell Surface Proteomics	14
Issue Publication Information	14
Alternative LC–MS/MS Platforms and Data Acquisition Strategies for Proteomic Genotyping of Human Hair Shafts	14
Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology	14
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi	14
LC-Orbitrap HRMS-Based Proteomics Reveals Novel Mitochondrial Dynamics Regulatory Proteins Associated with RasV12-Induced Glioblastoma (GBM) of Drosophila	14
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA	13
SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides	13
Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS^G12D Inhibitor MRTX1133	13
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase	13
Novel Diagnostic Biomarkers for High-Grade Serous Ovarian Cancer Uncovered by Data-Independent Acquisition Mass Spectrometry	13
Technical Evaluation of Plasma Proteomics Technologies	13
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins	13
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments	13
Coupling Proximity Biotinylation with Genomic Targeting to Characterize Locus-Specific Changes in Chromatin Environments	13
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data	13
O-GlcNAcylation: Sagacious Orchestrator of Bone-, Joint-, and Spine-Related Diseases	13
Single Cell Analysis of Proteoforms	13
The Multiomics Landscape of Plasma-Derived Small Extracellular Vesicles during the Development of HPV⁺ Cervical Cancer	13
Irradiation Causes Alterations of Polyamine, Purine, and Sulfur Metabolism in Red Blood Cells and Multiple Organs	13
Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms	13
Dynamic Changes in Lymphocyte Subsets and Inflammation-Immune-Related Proteins in Patients with Thyroid Papillary Carcinoma before and after Radioactive Iodine Therapy	13
Proteomics and Metabolic Characteristics of Boar Seminal Plasma Extracellular Vesicles Reveal Biomarker Candidates Related to Sperm Motility	13
Spatial Proteomic Profiling of Colorectal Cancer Revealed Its Tumor Microenvironment Heterogeneity	13
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics	13
Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied by Fibrosis in Human Stroma	13
Characterization of the Functional Interplay between the BRD7 and BRD9 Homologues in mSWI/SNF Complexes	12
RNxQuest: An Extension to the xQuest Pipeline Enabling Analysis of Protein–RNA Cross-Linking/Mass Spectrometry Data	12
Second Special Issue on Methods for Omics Research: Proteome Research and Beyond	12
Identifying Links between Alzheimer’s Disease and Type 2 Diabetes through Proteomics	12
Efficient Indexing of Peptides for Database Search Using Tide	12
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues	12
Optimized and Robust Workflow for Quantifying the Canonical Histone Ubiquitination Marks H2AK119ub and H2BK120ub by LC–MS/MS	12
Multiomics Analyses Reveal that Fatty Acid Metabolism and TCA Cycle Contribute to the Achievement of Functional Cure in Chronic Hepatitis B	12
Untargeted Gut Metabolomics to Delve the Interplay between Selenium Supplementation and Gut Microbiota	12
Non-Small Cell Lung Cancer Detection and Subtyping by UPLC-HRMS-Based Tissue Metabolomics	12
Correction to “The Curiosity of the Young”	12
Proteomics Platform Reveals Broad-Spectrum Nanobodies for SARS-CoV-2 Variant Neutralization	12
Flashlight into the Function of Unannotated C11orf52 using Affinity Purification Mass Spectrometry	12
Deep Saliva Proteomics Elucidating the Pathogenesis of Early Childhood Caries and Identifying Biomarkers for Early Prediction	12
Physiological Temperature and Osmotic Changes Drive Dynamic Proteome Alterations in the Leptospiral Outer Membrane and Enhance Protein Export Systems	12
Analysis of Protein–Protein Interactions in Chlamydomonas reinhardtii CC125 by Co-Fractionation Mass Spectrometry	12
Correction to “Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells”	12
Tumor Lipid Signatures Are Descriptive of Acquisition of Therapy Resistance in an Endocrine-Related Breast Cancer Mouse Model	12
Profiling Glutathionylome in CD38-Mediated Epithelial–Mesenchymal Transition	12
Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing	12
Decoding the Impact of Isolation Window Selection and QuantUMS Filtering in DIA-NN for DIA Quantification of Peptides and Proteins	12
Optimizing a Diagnostic Model of Periodontitis by Using Targeted Proteomics	12
Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre	12
Analysis of Stratifin Expression and Proteome Variation in a Rat Model of Acute Lung Injury	12
Proteomic Evolution from Acute to Post-COVID-19 Conditions	12
Plasma Metabolomic Changes in Children with Cerebral Palsy Exposed to Botulinum Neurotoxin	12
Plasma Metabolomics and Machine Learning Reveals Metabolic Alterations and Diagnostic Biomarkers for Deep Venous Thrombosis in Hypertensive Patients after Traumatic Fracture	12
Impact of Local Air Pressure on Ion Mobilities and Data Consistency in diaPASEF-Based High Throughput Proteomics	12
Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development	12
Accelerating Proteomics Using Broad Specificity Proteases	12
High-Coverage Metabolomics Reveals Gut Microbiota-Related Metabolic Traits of Type-2 Diabetes in Serum	12
OCIAD2 Promotes Cancer Progression via Metabolic Reprogramming in Lung Adenocarcinoma	12
Dynamic Responses of Chromosome-Binding Protein Complexes to Meiotic Prophase I of Mouse Spermatocyte	12
The Curiosity of the Young	11
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis	11
Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms	11
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis	11
Meta4P: A User-Friendly Tool to Parse Label-Free Quantitative Metaproteomic Data and Taxonomic/Functional Annotations	11
Serum Bile Acid Metabolites Predict the Therapeutic Effect of Mesalazine in Patients with Ulcerative Colitis	11
Identification of Plasma Metabolites and Dipeptides as Diagnostic Biomarkers for Psoriasis Vulgaris through Liquid Chromatography-High Resolution Mass Spectrometry-Based Metabolomics	11
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.	11
Quantitative Analysis of Nonhistone Lysine Methylation Sites and Lysine Demethylases in Breast Cancer Cell Lines	11
Large-Scale Metabolite Imaging Gallery of Mouse Organ Tissues to Study Spatial Metabolism	11
Rustims: An Open-Source Framework for Rapid Development and Processing of timsTOF Data-Dependent Acquisition Data	11
The Role of Aromatic Amino Acids in Polycystic Ovary Syndrome through Patients’ Blood Metabolic Profiling: A Systematic Review of the Past Five Years	11
Unphosphorylated Form of the PAQosome Core Subunit RPAP3 Binds Ribosomal Preassembly Complexes to Modulate Ribosome Biogenesis	11
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section	11