Journal of Proteome Research

Papers
(The H4-Index of Journal of Proteome Research is 35. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)
ArticleCitations
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?147
Issue Publication Information141
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation119
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma112
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation104
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity95
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics83
Margaret Dayhoff: A Personal Memoir71
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments70
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells70
Quantitative Proteomic Analysis Revealed Broad Roles of N6-Methyladenosine in Heat Shock Response69
The Novel Interplay between Commensal Gut Bacteria and Metabolites in Diet-Induced Hyperlipidemic Rats Treated with Simvastatin67
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform62
Quantitative Proteomics Reveals a Novel Role of the E3 Ubiquitin-Protein Ligase FANCL in the Activation of the Innate Immune Response through Regulation of TBK1 Phosphorylation during Peste des Petits62
ProteoSushi: A Software Tool to Biologically Annotate and Quantify Modification-Specific, Peptide-Centric Proteomics Data Sets60
Automated Assignment of Proteoform Classification Levels56
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia55
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model53
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics52
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling51
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis50
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers49
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics46
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection45
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows45
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform44
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens43
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools43
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development42
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications40
Issue Editorial Masthead39
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent39
Issue Publication Information38
Issue Editorial Masthead37
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses36
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