Journal of Biomedical Informatics

Papers
(The H4-Index of Journal of Biomedical Informatics is 39. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)
ArticleCitations
Cover 1/Spine199
Hypothesis-driven modeling of the human lung–ventilator system: A characterization tool for Acute Respiratory Distress Syndrome research182
A robust phenotype-driven likelihood ratio analysis approach assisting interpretable clinical diagnosis of rare diseases99
Multi-agent norm perception and induction in distributed healthcare91
Learning the progression patterns of treatments using a probabilistic generative model85
Digital Phenotyping of Mental Health using multimodal sensing of multiple situations of interest: A Systematic Literature Review83
Towards a unified search: Improving PubMed retrieval with full text73
Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy68
Discontinuous named entities in clinical text: A systematic literature review65
Predicting relations between SOAP note sections: The value of incorporating a clinical information model64
Leveraging heterogeneous tabular of EHRs with prompt learning for clinical prediction63
Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities60
A Syntax-enhanced model based on category keywords for biomedical relation extraction60
Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors57
From centralized to ad-hoc knowledge base construction for hypotheses generation57
From translational bioinformatics computational methodologies to personalized medicine57
MAM: Flexible Monte-Carlo Agent based model for modelling COVID-19 spread56
Development of a 3-Step theory of suicide ontology to facilitate 3ST factor extraction from clinical progress notes52
Identifying cancer sub-types from genomic scale data sets using confidence based integration (CBI)52
Corrigendum to “A pipeline for harmonising NHS Scotland laboratory data to enable national-level analyses” [J. Biomed. Inform. 2025 Feb;162:104771. https://doi.org/10.1016/j.jbi.2024.104771. Epub 202548
Detection of valvular heart diseases combining orthogonal non-negative matrix factorization and convolutional neural networks in PCG signals47
A multimodal machine learning algorithm improved diagnostic accuracy for otitis media in a school aged Aboriginal population46
Introducing the BlendedICU dataset, the first harmonized, international intensive care dataset46
One-shot distributed algorithms for addressing heterogeneity in competing risks data across clinical sites45
Graph-based abstractive biomedical text summarization45
ViPal: A framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences43
Measuring disease burden with individual cumulative incidence in patients with cirrhosis43
Joint modeling of mixed outcomes using a rank-based sparse neural network43
Deep neural networks for neuro-oncology: Towards patient individualized design of chemo-radiation therapy for Glioblastoma patients42
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?42
Improving broad-coverage medical entity linking with semantic type prediction and large-scale datasets42
A self-supervised language model selection strategy for biomedical question answering41
A fuzzy-based framework for diagnosing esophageal mobility disorder using high-resolution manometry41
Providing clinical context to the spatio-temporal analysis of 4D CT perfusion to predict acute ischemic stroke lesion outcomes41
Using a clinical narrative-aware pre-trained language model for predicting emergency department patient disposition and unscheduled return visits40
Natural language processing for clinical notes in dentistry: A systematic review40
Long-term prediction for temporal propagation of seasonal influenza using Transformer-based model40
GERNERMED++: Semantic annotation in German medical NLP through transfer-learning, translation and word alignment39
Unified concept and assertion detection using contextual multi-task learning in a clinical decision support system39
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