BMC Genomics

Article	Citations
Insights into bs5 resistance mechanisms in pepper against Xanthomonas euvesicatoria through transcriptome profiling	203
Transcriptome and methylome changes in two contrasting mungbean genotypes in response to drought stress	128
Genome wide transcriptome analysis provides bases on hepatic lipid metabolism disorder affected by increased dietary grain ratio in fattening lambs	106
Functions of thyroid hormone signaling in regulating melanophore, iridophore, erythrophore, and pigment pattern formation in spotted scat (Scatophagus argus)	101
Application of copy number variation sequencing combined with whole exome sequencing in prenatal left–right asymmetry disorders	87
The multi-omics signatures of telomere length in childhood	86
Genome-wide investigation of microRNAs and expression profiles during rhizome development in ginger (Zingiber officinale Roscoe)	79
Generalizability of machine learning in predicting antimicrobial resistance in E. coli: a multi-country case study in Africa	77
Transcriptome analysis reveals the high temperature induced damage is a significant factor affecting the osmotic function of gill tissue in Siberian sturgeon (Acipenser baerii)	67
Genome-wide identification and gene expression networks of LBD transcription factors in Populus trichocarpa	61
Characterization of sexual maturity-associated N6-methyladenosine in boar testes	56
Transcriptomic responses of Mediterranean sponges upon encounter with symbiont microbial consortia	55
Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome	54
Evolutionary analysis and functional characterization of BZR1 gene family in celery revealed their conserved roles in brassinosteroid signaling	52
Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture	51
Comparative genomics and phylogenetic relationships of two endemic and endangered species (Handeliodendron bodinieri and Eurycorymbus cavaleriei) of two monotypic genera within Sapindales	48
Small RNA sequencing reveals various microRNAs involved in piperine biosynthesis in black pepper (Piper nigrum L.)	47
Comparative analysis of the chloroplast and mitochondrial genomes of Saposhnikovia divaricata revealed the possible transfer of plastome repeat regions into the mitogenome	46
Inhibition of CUB and sushi multiple domains 1 (CSMD1) expression by miRNA-190a-3p enhances hypertrophic scar-derived fibroblast migration in vitro	46
Comprehensive analysis of key genes and pathways for biological and clinical implications in thyroid-associated ophthalmopathy	45
Genetic variation and demographic history of Sudan desert sheep reveal two diversified lineages	45
Computational dissection of genetic variation modulating the response of multiple photosynthetic phenotypes to the light environment	44
Identification of QTL for kernel weight and size and analysis of the pentatricopeptide repeat (PPR) gene family in cultivated peanut (Arachis hypogaea L.)	43
A comprehensive allele specific expression resource for the equine transcriptome	42
Comparison of Illumina and Oxford Nanopore sequencing data quality for Clostridioides difficile genome analysis and their application for epidemiological surveillance	41

Insights into the nuclear-organelle DNA integration in Cicuta virosa (Apiaceae) provided by complete plastid and mitochondrial genomes	41
UTR-Insight: integrating deep learning for efficient 5′ UTR discovery and design	40
Preliminary exploration of mRNA, lncRNA, and miRNA expressions in the bovine jejunum unveils novel aspects of Mycobacterium avium subspecies paratuberculosis infections	40
sORFdb – a database for sORFs, small proteins, and small protein families in bacteria	37
Integrated analysis of the transcriptome and hormone metabolome elucidates the regulatory mechanisms governing walnut bud germination	37
Systematic ocular phenotyping of 8,707 knockout mouse lines identifies genes associated with abnormal corneal phenotypes	36
Characterization and functional analysis of conserved non-coding sequences among poaceae: insights into gene regulation and phenotypic variation in maize	36
Sherlock-Genome: an R Shiny application for genomic analysis and visualization	36
Genic constraint against nonsynonymous variation across the mouse genome	35
Differential splicing of neuronal genes in a Trem2*R47H mouse model mimics alterations associated with Alzheimer’s disease	35
Autophagy is involved in the toxicity of the biocontrol agent GC16 against Tetranychus pueraricola (Acari: Tetranychidae) based on transcriptomic and proteomic analyses	35
Phenotypic variation and genome-wide association studies of main culm panicle node number, maximum node production rate, and degree-days to heading in rice	35
Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution	34
Dynamic physiological and transcriptomic changes reveal memory effects of salt stress in maize	33
Host-specific co-evolution likely driven by diet in Buchnera aphidicola	33
Genes expressed at low levels raise false discovery rates in RNA samples contaminated with genomic DNA	33
Analysis of autosomal dominant genes impacted by copy number loss in 24,844 fetuses without structural abnormalities	33
Genome-wide characterization and expression profiling of B3 superfamily during ethylene-induced flowering in pineapple (Ananas comosus L.)	33
UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example	33
During evolution from the earliest tetrapoda, newly-recruited genes are increasingly paralogues of existing genes and distribute non-randomly among the chromosomes	32
Ascites-derived hsa-miR-181a-5p serves as a prognostic marker for gastric cancer-associated malignant ascites	32
Polygenic risk score model for renal cell carcinoma in the Korean population and relationship with lifestyle-associated factors	32
Genome-wide analysis of the P450 gene family in tea plant (Camellia sinensis) reveals functional diversity in abiotic stress	32
Comparative genomic analysis of the Growth-Regulating Factors-Interacting Factors (GIFs) in six Salicaceae species and functional analysis of PeGIF3 reveals their regulatory role in Populus heteromorp	32
Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faecium	32
Effective population size in field pea	32
Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000T	31
The effect of lipocalin-2 (LCN2) on apoptosis: a proteomics analysis study in an LCN2 deficient mouse model	31
A comparative plastome approach enhances the assessment of genetic variation in the Melilotus genus	31
Zinc supplementation modifies brain tissue transcriptome of Apis mellifera honeybees	31
Gene expression profiling of trout muscle during flesh quality recovery following spawning	31
Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade	31
Gene expression profiling unveils the temporal dynamics of CIGB-300-regulated transcriptome in AML cell lines	31
Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.	31
Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains	31
The genome of sheep ked (Melophagus ovinus) reveals potential mechanisms underlying reproduction and narrower ecological niches	31
Genome-wide identification, evolution, and role of SPL gene family in beet (Beta vulgaris L.) under cold stress	31
Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species	31
An in-depth bioinformatic analysis of the novel recombinant lumpy skin disease virus strains: from unique patterns to established lineage	31
Signals of positive selection in genomes of palearctic Myotis-bats coexisting with a fungal pathogen	31
Genomic analysis based on chromosome-level genome assembly reveals Myrtaceae evolution and terpene biosynthesis of rose myrtle	30
Genome-wide association study provided insights into the polled phenotype and polled intersex syndrome (PIS) in goats	30
Transcriptome analysis of the Japanese eel (Anguilla japonica) during larval metamorphosis	30
Metagenomics of gut microbiome for migratory seagulls in Kunming city revealed the potential public risk to human health	30
Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery	30
The nuclear and mitochondrial genome assemblies of Tetragonisca angustula (Apidae: Meliponini), a tiny yet remarkable pollinator in the Neotropics	30
Transcriptome of different fruiting stages in the cultivated mushroom Cyclocybe aegerita suggests a complex regulation of fruiting and reveals enzymes putatively involved in fungal oxylipin biosynthes	30
Characterization of a novel root-associated diazotrophic rare PGPR taxa, Aquabacter pokkalii sp. nov., isolated from pokkali rice: new insights into the plant-associated lifestyle and brackish adaptat	29
A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)	29
Severe pantothenic acid deficiency induces alterations in the intestinal mucosal proteome of starter Pekin ducks	29

Systematic analysis and expression profiles of TCP gene family in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic str	29
RNA-binding proteins potentially regulate the alternative splicing of apoptotic genes during knee osteoarthritis progression	28
Identification of crucial circRNAs in skeletal muscle during chicken embryonic development	28
Transcriptomic and genomic analysis provides new insights in molecular and genetic processes involved in zucchini ZYMV tolerance	28
Identification of drought responsive Elaeis guineensis WRKY transcription factors with sensitivity to other abiotic stresses and hormone treatments	28
Genome-wide characterization and expression analysis of α-amylase and β-amylase genes underlying drought tolerance in cassava	28
Genome-wide analyses reveal a strong association between LEPR gene variants and body fat reserves in ewes	28
Integrated transcriptome and endogenous hormone analyses reveal the factors affecting the yield of Camellia oleifera	28
Ectopic and transient expression of VvDIR4 gene in Arabidopsis and grapes enhances resistance to anthracnose via affecting hormone signaling pathways and lignin production	28
Investigating the causal impact of gut microbiota on glioblastoma: a bidirectional Mendelian randomization study	28
Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum	27
Recurrent neural network for predicting absence of heterozygosity from low pass WGS with ultra-low depth	27
Complete chloroplast genome and comparison of herbicides toxicity on Aeschynomene indica (Leguminosae) in upland direct-seeding paddy field	27
How imputation can mitigate SNP ascertainment Bias	27
Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch	27
Assembly and comparative analysis of the complete mitochondrial genome of Brassica rapa var. Purpuraria	27
Genome-wide screening of the RNase T2 gene family and functional analyses in jujube (Ziziphus jujuba Mill.)	26
Suppression of pyrrolidine ring biosynthesis and its effects on gene expression and subsequent accumulation of anatabine in leaves of tobacco (N. tabacum L.)	26
Transcriptome analysis of Populus × canadensis ‘Zhongliao1’ in response to low temperature stress	26
Integrated transcriptomics contrasts fatty acid metabolism with hypoxia response in β-cell subpopulations associated with glycemic control	26
Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum	26
scMEB: a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data	26
RGS4 impacts carbohydrate and siderophore metabolism in Trichoderma reesei	26
Hi-C analysis of genomic contacts revealed karyotype abnormalities in chicken HD3 cell line	26
Modeling exercise using optogenetically contractible Drosophila larvae	26
Comparative analysis of whole blood transcriptomics between European and local Caribbean pigs in response to feed restriction in a tropical climate	26
A targeted antibody-based array reveals a serum protein signature as biomarker for adolescent idiopathic scoliosis patients	25
MIR396-GRF/GIF enhances in planta shoot regeneration of Dendrobium catenatum	25
Characterisation of the Paenarthrobacter nicotinovorans ATCC 49919 genome and identification of several strains harbouring a highly syntenic nic-genes cluster	25
Genome sequences of BCG Pasteur ATCC 35734 and its derivative, the vaccine candidate BCGΔBCG1419c	25
A genome-wide study of the lipoxygenase gene families in Medicago truncatula and Medicago sativa reveals that MtLOX24 participates in the methyl jasmonate response	25
Characteristics of DNA macro-alterations in breast cancer with liver metastasis before treatment	25
Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Pisum sativum L	25
Physiological attributes and transcriptomics analyses reveal the mechanism response of Helictotrichon virescens to low temperature stress	25
ProEnd: a comprehensive database for identifying HbYX motif-containing proteins across the tree of life	24
Genome-wide identification of CAMTA genes and their expression dependence on light and calcium signaling during seedling growth and development in mung bean	24
Sequencing and analysis of the complete mitochondrial genomes of Toona sinensis and Toona ciliata reveal evolutionary features of Toona	24
Identification and validation of qRT-PCR reference genes for analyzing grape infection with gray mold	24
Microsatellite density landscapes illustrate short tandem repeats aggregation in the complete reference human genome	24
Analysis of Gyimes Csango population samples on a high-resolution genome-wide basis	24
Deregulated RNAs involved in sympathetic regulation of sepsis-induced acute lung injury based on whole transcriptome sequencing	24
Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus	24
Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic	24
Illuminating the biosynthesis pathway genes involved in bioactive specific monoterpene glycosides in Paeonia veitchii Lynch by a combination of sequencing platforms	24
Transcriptomics analysis reveals the signal transduction mechanism of brassinolides in tea leaves and its regulation on the growth and development of Camellia sinensis	23
Circular and L50-like leaderless enterocins share a common ABC-transporter immunity gene	23
Comparative analysis of novel and common reference genes in adult tissues of the mussel Mytilus galloprovincialis	23
Comparison of capture-based mtDNA sequencing performance between MGI and illumina sequencing platforms in various sample types	23
Sea of opportunities: marine genomics in an era of global environmental change	23
Transcriptome analysis of the response to low temperature acclimation in Calliptamus italicus eggs	23
Genetic correlation for alcohol consumption between Europeans and East Asians	23
Whole blood transcriptome profiling identifies candidate genes associated with alopecia in male giant pandas (Ailuropoda melanoleuca)	23
Structural and gene composition variation of the complete mitochondrial genome of Mammillaria huitzilopochtli (Cactaceae, Caryophyllales), revealed by de novo assembly	23
Long non-coding RNA pairs to assist in diagnosing sepsis	23
Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration	23
Gene coexpression network during ontogeny in the yellow fever mosquito, Aedes aegypti	23
Genome-wide characterization of regulator of chromosome condensation 1 (RCC1) gene family in Artemisia annua L. revealed a conservation evolutionary pattern	23
Imprinted Dlk1-Gtl2 cluster miRNAs are potential epigenetic regulators of lamb fur quality	23
Frequent tRNA gene translocation towards the boundaries with control regions contributes to the highly dynamic mitochondrial genome organization of the parasitic lice of mammals	23
Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum	23
Immune system modulation & virus transmission during parasitism identified by multi-species transcriptomics of a declining insect biocontrol system	23
Predicting substrates for orphan solute carrier proteins using multi-omics datasets	22
DNA methylome and transcriptome identified Key genes and pathways involved in Speckled Eggshell formation in aged laying hens	22
Changes in ADAR RNA editing patterns in CMV and ZIKV congenital infections	22
Leveraging genomic insights from the neglected malaria parasites P. malariae and P. ovale using selective whole genome amplification (SWGA) approach	22
The interactions between monocarboxylate transporter genes MCT1, MCT2, and MCT4 and the kinetics of blood lactate production and removal after high-intensity efforts in elite males: a cross-sectional	22
Nanopore adaptive sampling to identify the NLR gene family in melon (Cucumis melo L.)	22
Unravelling the transcriptomic symphony of muscle ageing: key pathways and hub genes altered by ageing and caloric restriction in rat muscle revealed by RNA sequencing	22
GBDT_KgluSite: An improved computational prediction model for lysine glutarylation sites based on feature fusion and GBDT classifier	22
The phylogenomic landscape of extended-spectrum β-lactamase producing Citrobacter species isolated from surface water	22
Genomic data integration tutorial, a plant case study	22
De novo genome hybrid assembly and annotation of the endangered and euryhaline fish Aphanius iberus (Valenciennes, 1846) with identification of genes potentially involved in salinity adaptation	22
Elucidating the evolutionary dynamics of parasitism in Cuscuta: in-depth phylogenetic reconstruction and extensive plastomes reduction	22
Comparative analysis of HKTs in six poplar species and functional characterization of PyHKTs in stress-affected tissues	22
Comprehensive analysis of the long noncoding RNA-associated competitive endogenous RNA network in the osteogenic differentiation of periodontal ligament stem cells	22
Combining GWAS and comparative genomics to fine map candidate genes for days to flowering in mung bean	22
Morphological, physiological, and transcriptional responses to low nitrogen stress in Populus deltoides Marsh. clones with contrasting nitrogen use efficiency	22
Effects of a transient lack of dietary mineral phosphorus on renal gene expression and plasma metabolites in two high-yielding laying hen strains	22
Genomic consequences of intensive inbreeding in miniature inbred pigs	22
Frequencies of CYP2C9 polymorphisms in a Syrian cohort	22

Transcriptome-wide dynamics of m6A methylation in ISKNV and Siniperca chuatsi cells infected with ISKNV	21
The lactococcal ICE-ome encodes a repertoire of exchangeable traits with potential industrial relevance	21
Basic leucine zipper (bZIP) transcription factor genes and their responses to drought stress in ginseng, Panax ginseng C.A. Meyer	21
Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines	21
Genome-wide association study identifies candidate genes affecting body conformation traits of Zhongwei goat	21
Comparative pangenomic analysis of predominant human vaginal lactobacilli strains towards population-specific adaptation: understanding the role in sustaining a balanced and healthy vaginal microenvir	21
Comprehensive genome-wide analysis of calmodulin-binding transcription activator (CAMTA) in Durio zibethinus and identification of fruit ripening-associated DzCAMTAs	21
High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome	21
Expression profile and bioinformatics analysis of circRNA and its associated ceRNA networks in longissimus dorsi from Lufeng cattle and Leiqiong cattle	21
Morphological, anatomical, and transcriptomics analysis reveals the regulatory mechanisms of cassava plant height development	21
Identification of proteins associated with bast fiber growth of ramie by differential proteomic analysis	21
Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use	21
Diet-derived transmission of MicroRNAs from host plant into honey bee Midgut	20
The antennal transcriptome analysis and characterizations of odorant-binding proteins in Megachile saussurei (Hymenoptera, Megachilidae)	20
High heteroplasmy is associated with low mitochondrial copy number and selection against non-synonymous mutations in the snail Cepaea nemoralis	20
A comparison of the TempO-Seq and Affymetrix microarray platform using RTqPCR validation	20
Molecular characterization of recombinant LSDV isolates from 2022 outbreak in Indonesia through phylogenetic networks and whole-genome SNP-based analysis	20
Integrated proteomic and transcriptomic profiling identifies aberrant gene and protein expression in the sarcomere, mitochondrial complex I, and the extracellular matrix in Warmblood horses with myofi	20
Characterization of a novel multi-resistant Pseudomonas juntendi strain from China with chromosomal blaVIM−2 and a megaplasmid coharboring blaIMP−1−like and blaOXA−1	20
Genome-wide investigation and expression profiling of polyphenol oxidase (PPO) family genes uncover likely functions in organ development and stress responses in Populus trichocarpa	20
Genome-wide identification of polyamine metabolism and ethylene synthesis genes in Chenopodium quinoa Willd. and their responses to low-temperature stress	20
Correction: Identification of crucial LncRNAs associated with testicular development and LOC108635509 as a potential regulator in black goat spermatogenesis	20
Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes	20
Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome	20
Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis	20
Genome-wide investigation of the nuclear factor Y gene family in Ginger (Zingiber officinale Roscoe): evolution and expression profiling during development and abiotic stresses	20
Structural divergence and phylogenetic relationships of Ajania (Asteraceae) from plastomes and ETS	20
Unexpected genomic, biosynthetic and species diversity of Streptomyces bacteria from bats in Arizona and New Mexico, USA	20
Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)	20
Genome sequence of Ophryocystis elektroscirrha, an apicomplexan parasite of monarch butterflies: cryptic diversity and response to host-sequestered plant chemicals	20
Gut microbiota profiling variated during colorectal cancer development in mouse	20
Whole-genome SNP allele frequency differences between Tibetan and Large white pigs reveal genes associated with skeletal muscle growth	20
RNA-Seq reveals miRNA role in thermogenic regulation in brown adipose tissues of goats	20
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease	20
Genomic analysis of SBP gene family in Saccharum spontaneum reveals their association with vegetative and reproductive development	20
Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics	20
Association mapping reveals a reciprocal virulence/avirulence locus within diverse US Pyrenophora teres f. maculata isolates	20
Long noncoding RNAs and mRNAs profiling in ovary during laying and broodiness in Taihe Black-Bone Silky Fowls (Gallus gallus Domesticus Brisson)	19
A high-density linkage map and sex-determination loci in Pacific white shrimp (Litopenaeus vannamei)	19
Genetic effect of an InDel in the promoter region of the NUDT15 and its effect on myoblast proliferation in chickens	19
Construction of a ceRNA network in glioma and analysis of its clinical significance	19
Drug repurposing based on the DTD-GNN graph neural network: revealing the relationships among drugs, targets and diseases	19
Transcriptomic alterations in the ovine caruncular endometrium due to imbalanced nutrition and FSH-induced ovarian hyperstimulation	19
Predicting lncRNA-protein interactions using a hybrid deep learning model with dinucleotide-codon fusion feature encoding	19
Integrative analysis of the transcriptome, proteomics and metabolomics reveals key genes involved in the regulation of breast muscle metabolites in capons	19
Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host	19
Dynamic changes in the transcriptome and metabolome of pig ovaries across developmental stages and gestation	19
Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues	19
Genome-wide run of homozygosity analysis reveals candidate genomic regions associated with environmental adaptations of Tibetan native chickens	19
Genome-based taxonomic classification of the genus Sulfitobacter along with the proposal of a new genus Parasulfitobacter gen. nov. and exploring the gene clusters associated with sulfur oxidation	19
Multi-omic analysis reveals the effects of interspecific hybridization on the synthesis of seed reserve polymers in a Triticum turgidum ssp. durum × Aegilops sharonensis amphidiploid	19
The mitochondrial genome of Faughnia haani (Stomatopoda): novel organization of the control region and phylogenetic position of the superfamily Parasquilloidea	19
Yield increment and transcriptome response caused by blue light treatment in Hericium coralloides	19
Genomic characterization of a nematode tolerance locus in sugar beet	19
Characterization of a haplotype-reference panel for genotyping by low-pass sequencing in Swiss Large White pigs	19
dbCNV: deleteriousness-based model to predict pathogenicity of copy number variations	19
Effect of metabolically divergent pig breeds and tissues on mesenchymal stem cell expression patterns during adipogenesis	19
De novo and comparative transcriptomic analysis explain morphological differences in Panax notoginseng taproots	19
AutoCNV: a semiautomatic CNV interpretation system based on the 2019 ACMG/ClinGen Technical Standards for CNVs	19
Combined metabolomic and transcriptomic analysis reveals the key genes for triterpenoid biosynthesis in Cyclocarya paliurus	19
LCRAnnotationsDB: a database of low complexity regions functional and structural annotations	19
TAD cliques predict key features of chromatin organization	18
Genome-wide identification of the GRF family in sweet orange (Citrus sinensis) and functional analysis of the CsGRF04 in response to multiple abiotic stresses	18
Insights into the genetic variability and evolutionary dynamics of tomato spotted wilt orthotospovirus in China	18
Development of pre-implantation genetic testing protocol for monogenic disorders (PGT-M) of Hb H disease	18
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data	18
Integrative analyses and validation of ferroptosis-related genes and mechanisms associated with cerebrovascular and cardiovascular ischemic diseases	18
Genome-wide analysis of spatiotemporal expression patterns during rice leaf development	18
Genome-wide identification and expression analysis of the B-box transcription factor gene family in grapevine (Vitis vinifera L.)	18
Genomic analysis of the marine yeast Rhodotorula sphaerocarpa ETNP2018 reveals adaptation to the open ocean	18
Validation of reference genes for whole blood gene expression analysis in cord blood of preterm and full-term neonates and peripheral blood of healthy adults	18
De novo assembly and annotation of the singing mouse genome	18
Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs	18
A high-quality de novo genome assembly based on nanopore sequencing of a wild-caught coconut rhinoceros beetle (Oryctes rhinoceros)	18
Identifying genomic islands with deep neural networks	18
PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data	18
Whole-genome sequencing reveals genomic diversity and selection signatures in Xia’nan cattle	18
Exploring the genetic basis of anthracnose resistance in Ethiopian sorghum through a genome-wide association study	18
Insertion of an endogenous Jaagsiekte sheep retrovirus element into the BCO2 - gene abolishes its function and leads to yellow discoloration of adipose tissue in Norwegian Spælsau (Ovis aries)	18
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis	18
Transcriptomics and gut microbiome analysis of the edible herb Bidens pilosa as a functional feed additive to promote growth and metabolism in tilapia (Oreochromis spp.)	18
Imprints of independent allopolyploid formations on patterns of gene expression in two sibling yarrow species (Achillea, Asteraceae)	18
Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing	18
Genome-wide identification and expression analysis of the NRT genes in Ginkgo biloba under nitrate treatment reveal the potential roles during calluses browning	18
Transcriptome sequencing reveals the differentially expressed lncRNAs and mRNAs in response to cold acclimation and cold stress in Pomacea canaliculata	18
Multi-level integrative analysis of the roles of lncRNAs and differential mRNAs in the progression of chronic pancreatitis to pancreatic ductal adenocarcinoma	18
Prominent transcriptomic changes in Mycobacterium intracellulare under acidic and oxidative stress	17
Genomic dissection of the correlation between milk yield and various health traits using functional and evolutionary information about imputed sequence variants of 34,497 German Holstein cows	17
Unraveling the role of male reproductive tract and haemolymph in cantharidin-exuding Lydus trimaculatus and Mylabris variabilis (Coleoptera: Meloidae): a comparative transcriptomics approach	17
Alteration of chromosome structure impacts gene expressions implicated in pancreatic ductal adenocarcinoma cells	17
Gene regulatory network analysis defines transcriptome landscape with alternative splicing of human umbilical vein endothelial cells during replicative senescence	17
Systematical characterization of Rab7 gene family in Gossypium and potential functions of GhRab7B3-A gene in drought tolerance	17
Genetic diversities and drug resistance in Mycobacterium bovis isolates from zoonotic tuberculosis using whole genome sequencing	17
Identification of defense related gene families and their response against powdery and downy mildew infections in Vitis vinifera	17
Comprehensive evaluation and guidance of structural variation detection tools in chicken whole genome sequence data	17