BMC Genomics

Article	Citations
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics	181
A review of deep learning applications for genomic selection	147
HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly	97
Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca	91
MutationalPatterns: the one stop shop for the analysis of mutational processes	86
A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2	80
Genomic architecture of phenotypic extremes in a wild cervid	73
A comprehensive evaluation of long read error correction methods	71
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences	67
Cell-specific characterization of the placental methylome	67
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data	66
AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens	65
GWAS revealed effect of genotype × environment interactions for grain yield of Nebraska winter wheat	59
Chloroplast genome variation and phylogenetic relationships of Atractylodes species	59
A positive correlation between GC content and growth temperature in prokaryotes	55
The transcriptomic responses of Atlantic salmon (Salmo salar) to high temperature stress alone, and in combination with moderate hypoxia	54
Deep learning assisted multi-omics integration for survival and drug-response prediction in breast cancer	54
GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians	53
Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets	53
Assessing genomic diversity and signatures of selection in Jiaxian Red cattle using whole-genome sequencing data	52
Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia	52
UniBind: maps of high-confidence direct TF-DNA interactions across nine species	51
RBPsuite: RNA-protein binding sites prediction suite based on deep learning	51
Genome-wide identification of R2R3-MYB family in wheat and functional characteristics of the abiotic stress responsive gene TaMYB344	48
Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling	44

Identification of ferroptosis genes in immune infiltration and prognosis in thyroid papillary carcinoma using network analysis	44
Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations	43
Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs	43
Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces	42
Differential regulation of intramuscular fat and abdominal fat deposition in chickens	41
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis	41
Intellectual disability genomics: current state, pitfalls and future challenges	40
Genome-wide identification of the MADS-box transcription factor family in autotetraploid cultivated alfalfa (Medicago sativa L.) and expression analysis under abiotic stress	40
Multi-trait GWAS using imputed high-density genotypes from whole-genome sequencing identifies genes associated with body traits in Nile tilapia	40
Multi-omics analysis reveals the glycolipid metabolism response mechanism in the liver of genetically improved farmed Tilapia (GIFT, Oreochromis niloticus) under hypoxia stress	40
Genetic mapping for agronomic traits in a MAGIC population of common bean (Phaseolus vulgaris L.) under drought conditions	39
Antimicrobial activity screening of rhizosphere soil bacteria from tomato and genome-based analysis of their antimicrobial biosynthetic potential	39
Comparing low-pass sequencing and genotyping for trait mapping in pharmacogenetics	39
Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery	39
Comprehensive analysis of NAC transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum)	38
Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae)	37
The complete mitochondrial genome of okra (Abelmoschus esculentus): using nanopore long reads to investigate gene transfer from chloroplast genomes and rearrangements of mitochondrial DNA molecules	37
Identification, evolution, expression, and docking studies of fatty acid desaturase genes in wheat (Triticum aestivum L.)	37
Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection	36
Prevalence, antibiotic resistance, virulence and genetic diversity of Staphylococcus aureus isolated from bulk tank milk samples of U.S. dairy herds	36
SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction	35
Genome-wide association analysis unveils novel QTLs for seminal root system architecture traits in Ethiopian durum wheat	35
Genomic analysis of worldwide sheep breeds reveals PDGFD as a major target of fat-tail selection in sheep	34
Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks	34
Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines	34
Complementary transcriptomic and proteomic analyses reveal the cellular and molecular processes that drive growth and development of Fasciola hepatica in the host liver	34
Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation	34
Complete mitochondrial genomes of three Mangifera species, their genomic structure and gene transfer from chloroplast genomes	33
Genome wide association mapping for heat tolerance in sub-tropical maize	33
Gene co-expression network analysis reveals key pathways and hub genes in Chinese cabbage (Brassica rapa L.) during vernalization	33
Transcriptome analysis reveals mechanism of early ripening in Kyoho grape with hydrogen peroxide treatment	33
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool	33
Genome-wide investigation and expression profiling of polyphenol oxidase (PPO) family genes uncover likely functions in organ development and stress responses in Populus trichocarpa	33
Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine	33
Comparative chloroplast genome analysis of Impatiens species (Balsaminaceae) in the karst area of China: insights into genome evolution and phylogenomic implications	32
Sperm miRNAs— potential mediators of bull age and early embryo development	32
Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in human aortic dissection	32
Integrated analysis of the responses of a circRNA-miRNA-mRNA ceRNA network to heat stress in rainbow trout (Oncorhynchus mykiss) liver	32
Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite	32
Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]	31
Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum	31
Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential	31
Phylogenetic analysis of the caspase family in bivalves: implications for programmed cell death, immune response and development	31
LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival	31
Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC	31
A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers	31
The effect of methanol fixation on single-cell RNA sequencing data	31
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity	31
Genome-wide identification and expression profiling analysis of maize AP2/ERF superfamily genes reveal essential roles in abiotic stress tolerance	31
Multiomics study of a heterotardigrade, Echinisicus testudo, suggests the possibility of convergent evolution of abundant heat-soluble proteins in Tardigrada	30

Automatic identification and annotation of MYB gene family members in plants	30
Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)	30
Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution	30
Runs of homozygosity analysis of South African sheep breeds from various production systems investigated using OvineSNP50k data	29
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction	29
Determining extracellular vesicles properties and miRNA cargo variability in bovine milk from healthy cows and cows undergoing subclinical mastitis	29
Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains	29
A meta-analysis of genome-wide association studies for average daily gain and lean meat percentage in two Duroc pig populations	29
Duplex sequencing identifies genomic features that determine susceptibility to benzo(a)pyrene-induced in vivo mutations	29
Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves	29
Combined nanopore adaptive sequencing and enzyme-based host depletion efficiently enriched microbial sequences and identified missing respiratory pathogens	29
Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice	29
A high-continuity and annotated tomato reference genome	28
Mapping the m1A, m5C, m6A and m7G methylation atlas in zebrafish brain under hypoxic conditions by MeRIP-seq	28
The complete chloroplast genome of Stauntonia chinensis and compared analysis revealed adaptive evolution of subfamily Lardizabaloideae species in China	28
Chloroplast genome sequence of Chongming lima bean (Phaseolus lunatus L.) and comparative analyses with other legume chloroplast genomes	28
Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs	28
Genome-wide identification, expression analysis, and functional study of the GRAS transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]	28
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome	28
A multi-breed GWAS for morphometric traits in four Beninese indigenous cattle breeds reveals loci associated with conformation, carcass and adaptive traits	28
De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stress	28
Genome-wide identification and expression analysis of the xyloglucan endotransglucosylase/hydrolase gene family in poplar	28
Characterization of cotton ARF factors and the role of GhARF2b in fiber development	28
The eukaryotic MEP-pathway genes are evolutionarily conserved and originated from Chlaymidia and cyanobacteria	28
Transcriptome analysis reveals the molecular mechanisms of heterosis on thermal resistance in hybrid abalone	28
Genome-wide characterization of 2-oxoglutarate and Fe(II)-dependent dioxygenase family genes in tomato during growth cycle and their roles in metabolism	28
Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple	28
Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae)	28
Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response	28
Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response	27
Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum	27
Impact of homologous recombination on core genome phylogenies	27
Characterization of runs of homozygosity, heterozygosity-enriched regions, and population structure in cattle populations selected for different breeding goals	27
Transcriptome analysis of embryonic muscle development in Chengkou Mountain Chicken	27
Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response	27
Genome mining and UHPLC–QTOF–MS/MS to identify the potential antimicrobial compounds and determine the specificity of biosynthetic gene clusters in Bacillus subtilis NCD-2	27
A comparison of transcriptome analysis methods with reference genome	27
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relati	27
Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq	27
Transcriptome sequencing and metabolome analysis of food habits domestication from live prey fish to artificial diets in mandarin fish (Siniperca chuatsi)	26
Transcriptome-wide study revealed m6A regulation of embryonic muscle development in Dingan goose (Anser cygnoides orientalis)	26
Genome-wide identification and expression analysis of the AT-hook Motif Nuclear Localized gene family in soybean	26
Genome-wide association analysis reveals that EDNRB2 causes a dose-dependent loss of pigmentation in ducks	26
Three metabolic pathways are responsible for the accumulation and maintenance of high AsA content in kiwifruit (Actinidia eriantha)	26
Changes in gene body methylation do not correlate with changes in gene expression in Anthozoa or Hexapoda	26
Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress	26
Genome-wide characterization and analysis of WRKY transcription factors in Panax ginseng	26
Genome-wide detection of CNVs and their association with performance traits in broilers	26
LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing	26
Comparative genomics of the plant-growth promoting bacterium Sphingobium sp. strain AEW4 isolated from the rhizosphere of the beachgrass Ammophila breviligulata	26
Genome sequencing and comparative genomic analysis of highly and weakly aggressive strains of Sclerotium rolfsii, the causal agent of peanut stem rot	26
Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle	26
A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast	25
Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum	25
A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes	25
Effects of growth years on ginsenoside biosynthesis of wild ginseng and cultivated ginseng	25
Re-examination of two diatom reference genomes using long-read sequencing	25
Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum	25
Genome-wide run of homozygosity analysis reveals candidate genomic regions associated with environmental adaptations of Tibetan native chickens	25
Research on lncRNA related to drought resistance of Shanlan upland rice	25
Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications	25
The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome	25
Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses	25
Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons	25
Identification and evolution analysis of the JAZ gene family in maize	25
Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation	25
Genome sequencing of Inonotus obliquus reveals insights into candidate genes involved in secondary metabolite biosynthesis	25
Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum	25
Uncovering the genetic mechanisms regulating panicle architecture in rice with GPWAS and GWAS	24
Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress	24
Long non-coding RNA pairs to assist in diagnosing sepsis	24
Transcriptome comparative analysis of ovarian follicles reveals the key genes and signaling pathways implicated in hen egg production	24
Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton	24
QTL mapping of root traits in wheat under different phosphorus levels using hydroponic culture	24
Uterine transcriptome analysis reveals mRNA expression changes associated with the ultrastructure differences of eggshell in young and aged laying hens	24
SARS-CoV-2 early infection signature identified potential key infection mechanisms and drug targets	23
Genome-wide identification of BAM (β-amylase) gene family in jujube (Ziziphus jujuba Mill.) and expression in response to abiotic stress	23
Identifying pleiotropic variants and candidate genes for fertility and reproduction traits in Holstein cattle via association studies based on imputed whole-genome sequence genotypes	23
Mitogenomic diversity and phylogeny analysis of yak (Bos grunniens)	23
The BBX gene family in Moso bamboo (Phyllostachys edulis): identification, characterization and expression profiles	23

Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus	23
Dynamics of rumen gene expression, microbiome colonization, and their interplay in goats	23
TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs	23
Genome-wide identification and functional characterization of the Camelina sativa WRKY gene family in response to abiotic stress	23
The genomic basis of the Streptococcus thermophilus health-promoting properties	23
Unbiased RNA-Seq-driven identification and validation of reference genes for quantitative RT-PCR analyses of pooled cancer exosomes	23
Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing	23
Genome-wide identification and expression analysis of the R2R3-MYB gene family in tobacco (Nicotiana tabacum L.)	23
Genome-wide in silico identification and expression analysis of beta-galactosidase family members in sweetpotato [Ipomoea batatas (L.) Lam]	23
Moose genomes reveal past glacial demography and the origin of modern lineages	23
Genome-wide identification, characterization, and expression analysis of the NAC transcription factor family in orchardgrass (Dactylis glomerata L.)	23
Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.	23
Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research	23
Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)	23
Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha	23
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae	23
Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls	22
Complete chloroplast genomes provide insights into evolution and phylogeny of Zingiber (Zingiberaceae)	22
Characterization of nucleic acids from extracellular vesicle-enriched human sweat	22
Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis	22
Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions	22
An in-depth bioinformatic analysis of the novel recombinant lumpy skin disease virus strains: from unique patterns to established lineage	22
New insights into the evolution and functional divergence of the CIPK gene family in Saccharum	22
Growth inhibition of Spodoptera frugiperda larvae by camptothecin correlates with alteration of the structures and gene expression profiles of the midgut	22
Research on the drought tolerance mechanism of Pennisetum glaucum (L.) in the root during the seedling stage	22
Gene-coexpression network analysis identifies specific modules and hub genes related to cold stress in rice	22
Transcriptome of different fruiting stages in the cultivated mushroom Cyclocybe aegerita suggests a complex regulation of fruiting and reveals enzymes putatively involved in fungal oxylipin biosynthes	22
Sequence-based drug-target affinity prediction using weighted graph neural networks	22
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments	22
Fusarium head blight resistance in European winter wheat: insights from genome-wide transcriptome analysis	22
Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated	22
Characterization of UDP-glycosyltransferase family members reveals how major flavonoid glycoside accumulates in the roots of Scutellaria baicalensis	22
The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting	21
Amino acid transporter (AAT) gene family in foxtail millet (Setaria italica L.): widespread family expansion, functional differentiation, roles in quality formation and response to abiotic stresses	21
A global analysis of CNVs in Chinese indigenous fine-wool sheep populations using whole-genome resequencing	21
Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing	21
Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity	21
Comparative genomics and physiological investigation supported safety, cold adaptation, efficient hydrolytic and plant growth-promoting potential of psychrotrophic Glutamicibacter arilaitensis LJH19,	21
Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies	21
Transcriptome analysis of five ovarian stages reveals gonad maturation in female Macrobrachium nipponense	21
Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil	21
Chromosome-scale assembly and annotation of the perennial ryegrass genome	21
Analysis of the genetic diversity and population structure of Monochasma savatieri Franch. ex Maxim using novel EST-SSR markers	20
Ferroptosis-associated DNA methylation signature predicts overall survival in patients with head and neck squamous cell carcinoma	20
Analysis of codon usage patterns in citrus based on coding sequence data	20
Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.)	20
Evidence of multiple genome duplication events in Mytilus evolution	20
Transcriptomic analysis reveals pronounced changes in gene expression due to sub-lethal pyrethroid exposure and ageing in insecticide resistance Anopheles coluzzii	20
Identification of drought responsive Elaeis guineensis WRKY transcription factors with sensitivity to other abiotic stresses and hormone treatments	20
The mitochondrial genome and Epigenome of the Golden lion Tamarin from fecal DNA using Nanopore adaptive sequencing	20
Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits	20
Genome-wide identification and characterization of the TIFY gene family in kiwifruit	20
Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study	20
Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels	20
Linkage disequilibrium patterns, population structure and diversity analysis in a worldwide durum wheat collection including Argentinian genotypes	20
Genome-wide identification and expression analysis of the B-box transcription factor gene family in grapevine (Vitis vinifera L.)	20
Systemic paralogy and function of retinal determination network homologs in arachnids	20
De novo transcriptome sequencing and anthocyanin metabolite analysis reveals leaf color of Acer pseudosieboldianum in autumn	20
Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis	20
Elevated ASCL1 activity creates de novo regulatory elements associated with neuronal differentiation	20
Efficient COI barcoding using high throughput single-end 400 bp sequencing	20
Genome-wide association studies detects candidate genes for wool traits by re-sequencing in Chinese fine-wool sheep	20
Identification of a major-effect QTL associated with pre-harvest sprouting in cucumber (Cucumis sativus L.) using the QTL-seq method	20
Comparative analysis of the chloroplast and mitochondrial genomes of Saposhnikovia divaricata revealed the possible transfer of plastome repeat regions into the mitogenome	19
Genome-wide identification and expression analysis of the WRKY transcription factor family in flax (Linum usitatissimum L.)	19
Comparative analysis of the Mercenaria mercenaria genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks	19
Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)	19
Transcriptome analysis of ovary tissues from low- and high-yielding Changshun green-shell laying hens	19
Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)	19
Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions	19
Analysis of global Aeromonas veronii genomes provides novel information on source of infection and virulence in human gastrointestinal diseases	19
Identification of genes associated with the biosynthesis of unsaturated fatty acid and oil accumulation in herbaceous peony ‘Hangshao’ (Paeonia lactiflora ‘Hangshao’) seeds based on transcriptome anal	19
PacBio full-length transcriptome of wild apple (Malus sieversii) provides insights into canker disease dynamic response	19
Comparative transcriptome and metabolome analyses reveal the methanol dissimilation pathway of Pichia pastoris	19
Genome-wide association mapping reveals potential novel loci controlling stripe rust resistance in a Chinese wheat landrace diversity panel from the southern autumn-sown spring wheat zone	19
The chloroplast genomes of four Bupleurum (Apiaceae) species endemic to Southwestern China, a diversity center of the genus, as well as their evolutionary implications and phylogenetic inferences	19
Comparative analysis of complete Ilex (Aquifoliaceae) chloroplast genomes: insights into evolutionary dynamics and phylogenetic relationships	19
Comparative evaluation for the globin gene depletion methods for mRNA sequencing using the whole blood-derived total RNAs	19
Uphyloplot2: visualizing phylogenetic trees from single-cell RNA-seq data	19
Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum	19
High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes	19
Genome-wide identification and analysis of class III peroxidases in Betula pendula	19
Differential microRNA expression, microRNA arm switching, and microRNA:long noncoding RNA interaction in response to salinity stress in soybean	19
Comparative analysis of chloroplast genomes of cultivars and wild species of sweetpotato (Ipomoea batatas [L.] Lam)	19
Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in sweet potato	19
Transcriptome and methylome changes in two contrasting mungbean genotypes in response to drought stress	19
Insights into phylogenetic relationships and genome evolution of subfamily Commelinoideae (Commelinaceae Mirb.) inferred from complete chloroplast genomes	19
Integrated analysis of the methylome and transcriptome of chickens with fatty liver hemorrhagic syndrome	19
Identification and characterization of immune-related lncRNAs and lncRNA-miRNA-mRNA networks of Paralichthys olivaceus involved in Vibrio anguillarum infection	19
Gene network analysis reveals candidate genes related with the hair follicle development in sheep	19
Comparative transcriptome analysis of the newly discovered insect vector of the pine wood nematode in China, revealing putative genes related to host plant adaptation	19
The chloroplast genome of Amygdalus L. (Rosaceae) reveals the phylogenetic relationship and divergence time	19
Wheat transcriptome profiling reveals abscisic and gibberellic acid treatments regulate early-stage phytohormone defense signaling, cell wall fortification, and metabolic switches following Fusarium g	19
Regulation of the antennal transcriptome of the dengue vector, Aedes aegypti, during the first gonotrophic cycle	19
GWAS and bulked segregant analysis reveal the Loci controlling growth habit-related traits in cultivated Peanut (Arachis hypogaea L.)	19