BMC Genomics

Article	Citations
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage	150
Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration	103
Autophagy is involved in the toxicity of the biocontrol agent GC16 against Tetranychus pueraricola (Acari: Tetranychidae) based on transcriptomic and proteomic analyses	71
The multi-omics signatures of telomere length in childhood	69
The expression of RBPJ and its potential role in rheumatoid arthritis	68
Identification of candidate proteins influencing spermatogenesis in Shandong black cattle via integrated multiomics analysis	68
Ascites-derived hsa-miR-181a-5p serves as a prognostic marker for gastric cancer-associated malignant ascites	64
RNA sequencing analysis in chicken spleen infected with Newcastle disease virus reveals genotype-specific immune response	63
Predicting allergy and postpartum depression from an incomplete compositional microbiome	60
Genome-wide identification of polyamine metabolism and ethylene synthesis genes in Chenopodium quinoa Willd. and their responses to low-temperature stress	59
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease	59
SPLHRNMTF: robust orthogonal non-negative matrix tri-factorization with self-paced learning and dual hypergraph regularization for predicting miRNA-disease associations	58
CGG, CAG, and GAA: Genome-wide comparison of the disease linked trinucleotide short tandem repeats	58
A novel isatin Schiff based cerium complex: synthesis, characterization, antimicrobial activity and molecular docking studies	57
Genome-wide analysis of the BES1 gene family reveals their involvement in grain development of Triticum aestivum L	57
Genome-wide association study provided insights into the polled phenotype and polled intersex syndrome (PIS) in goats	57
Genome-wide identification and stress response analysis of cyclophilin gene family in apple (Malus × domestica)	55
Small open reading frames: a comparative genetics approach to validation	52
Expression of ABC transporters negatively correlates with ectoine biosynthesis in Halomonas campaniensis under NaCl and ultraviolet mutagenesis treatments revealed by transcriptomic and proteomics com	51
Correction: Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines	51
Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle	49
Clonostachys rosea ‘omics profiling: identification of putative metabolite-gene associations mediating its in vitro antagonism against Fusarium graminearum	49
Regulation of the amh gene promoter activity by SF-1 in sex-reversing Cheilinus undulatus and its adaptive evolution	48
Diversity and evolution analysis of RNA viruses in three wheat aphid species	46
Genome-wide analysis of the P450 gene family in tea plant (Camellia sinensis) reveals functional diversity in abiotic stress	46

Genome-wide identification and expression analysis of the NRT genes in Ginkgo biloba under nitrate treatment reveal the potential roles during calluses browning	46
The genomic diversity of SARS-CoV-2 Omicron lineages collected during routine sentinel surveillance in Tanzania between November 2022 and July 2023	45
Genomic consequences of intensive inbreeding in miniature inbred pigs	45
Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Pisum sativum L	45
Insights into the taxonomy and virulence-related genetic profiles in 97 Cupriavidus strains through comparative genomic analysis	44
Codon usage bias and selective constraints in Gentianales mitogenomes	44
The effects of runs-of-homozygosity on pig domestication and breeding	44
Genome assembly and annotation of Babesia rossi, a protozoan parasite for canine babesiosis	44
Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers	43
Dynamic physiological and transcriptomic changes reveal memory effects of salt stress in maize	42
Salinity-responsive histone PTMs identified in the gills and gonads of Mozambique tilapia (Oreochromis mossambicus)	42
Genome-wide association study identifies key quantitative trait loci (QTL) for fruit morphometric traits in avocado (Persea spp.)	42
A haplotype-resolved chromatin landscape connects cis-regulatory variants to trait variation in Citrus	41
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples	40
Age-associated changes in the shell gland transcriptomics and eggshell quality of broiler breeder hens	40
Alteration of chromosome structure impacts gene expressions implicated in pancreatic ductal adenocarcinoma cells	39
Metabolomics, phytohormone and transcriptomics strategies to reveal the mechanism of barley heading date regulation to responds different photoperiod	38
Evolutionary genetics of flipper forelimb and hindlimb loss from limb development-related genes in cetaceans	37
Transcriptome and metabolome analyses reveal the roles of APX2 in regulating tiller growth and metabolism in rice (Oryza sativa L.)	37
Genomic survey and expression analysis of the CDPK genes in Liriodendron Chinense to explore their potential functions under multiple abiotic stresses	36
peaksat: an R package for ChIP-seq peak saturation analysis	36
Population genetic study of 17 Y-STR Loci of the Sorani Kurds in the Province of Sulaymaniyah, Iraq	36
ProEnd: a comprehensive database for identifying HbYX motif-containing proteins across the tree of life	35
De novo assembly and annotation of the singing mouse genome	35
Genomic insights into the antimicrobial resistance and virulence of Helicobacter pylori isolates from gastritis patients in Pereira, Colombia	34
Assembly and comparative analysis of the complete mitochondrial genome of Brassica rapa var. Purpuraria	34
Genome-wide scan for selection signatures reveals novel insights into the adaptive capacity characteristics in three Chinese cattle breeds	34
Comparative analysis of PRR receptors and R genes reveals structural and functional divergence between wild, ancestral, and commercial citrus species	34
Dexamethasone-induced whitening of rabbit brown adipose tissue: leptin resistance and mitochondrial dysfunction	34
Quantitative trait loci and candidate genes for yield-related traits of upland cotton revealed by genome-wide association analysis under drought conditions	34
Beta-galactosidase gene family genome-wide identification and expression analysis of members related to fruit softening in melon (Cucumis melo L.)	33
Molecular characterization of two conjugative resistance plasmids from a clinical multidrug-resistant ST15 Klebsiella pneumoniae	33
Cold exposure induces lipid dynamics and thermogenesis in brown adipose tissue of goats	33
Multi-omics insights into functional alterations of the liver in growth-retarded offspring: transcriptomic, epigenetic and metabolomic profiles	33
The effect of induced molting on the testicular physiological remodeling in no-semen roosters	33
A targeted antibody-based array reveals a serum protein signature as biomarker for adolescent idiopathic scoliosis patients	32
Revised time estimation of the ancestral human chromosome 2 fusion	32
Genome-wide landscape of runs of homozygosity and differentiation across Egyptian goat breeds	32
Protein-coding genes in humans and model mammals (mouse, rat and pig): gene identifiers and disambiguation of gene nomenclature retrieved from the Ensembl genome browser	32
Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)	32
Genome-wide identification and temperature-responsive expression profiling of TRP gene family in red swamp crayfish (Procambarus clarkii)	32
Selective hippocampal transcriptional adaptation to long-term cannabidiol exposure in mice	32
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis	32
Correction: Comparative transcriptome analysis of skin color-associated genes in leopard coral grouper (Plectropomus leopardus)	32
Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs	31
Integrated genome and transcriptome analysis reveals pathogenic mechanisms of Calonectria eucalypti in Eucalyptus leaf blight	31
Examining parent-of-origin effects on transcription and RNA methylation in mediating aggressive behavior in honey bees (Apis mellifera)	31
Temperature-induced variation in the transcriptome of maritime pine (Pinus pinaster Ait.) embryogenic masses modulates the phenotype of the derived plants	31
Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing	31
RNA-Seq analysis of the pyloric caecum, liver, and muscle reveals molecular mechanisms regulating fillet color in rainbow trout	31

Unleashing the immune arsenal: development of broad spectrum multiepitope bluetongue vaccine targeting conserved T cell epitopes of structural proteins	30
Genome-wide analysis of polyamine biosynthesis genes in wheat reveals gene expression specificity and involvement of STRE and MYB-elements in regulating polyamines under drought	30
Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome	30
Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data	30
Comprehensive analysis of RNA m6A methylation in pressure overload-induced cardiac hypertrophy	30
Whole-genome resequencing revealed genetic diversity and the haplotype containing MC1R associated with black coat color in Liangshan sheep	30
HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes	30
Chromatin state dynamics during the Plasmodium falciparum intraerythrocytic development cycle	30
Fluorescent Pseudomonas spp. from suppressive and conducive soils share genomic and functional traits relevant to Fusarium graminearum disease suppression	30
EMGMDA: a multi-modal graph neural framework for robust prediction of miRNA–disease associations	30
Large-scale integration of meta-QTL and genome-wide association study identifies genomic regions and candidate genes for photosynthetic efficiency traits in bread wheat	29
Quantitative trait loci mapping of gene expression and chromatin accessibility in primary fibroblasts reveals shared allelic effects between Latin American and European ancestries	29
A catalog of gene editing sites and genetic variations in editing sites in model organisms	29
Identification and characterization of catalase genes involved in the response to heat stress in Tetranychus urticae (Acari: Tetranychidae)	29
UTR-Insight: integrating deep learning for efficient 5′ UTR discovery and design	29
Integrative multi-omics approach for identifying molecular signatures and pathways and deriving and validating molecular scores for COVID-19 severity and status	29
Whole-genome resequencing reveals genetic divergence, local adaptation, and conservation priorities in three helmet catfishes (complex Cranoglanis bouderius)	29
Assembly and comparative analysis of the complete mitochondrial genome of two species of Argentina (Rosaceae)	29
Caregiver-child interaction and early childhood development among preschool children in rural China: the possible role of blood epigenome-wide DNA methylation	29
Integrated analysis of the transcriptome and hormone metabolome elucidates the regulatory mechanisms governing walnut bud germination	29
Naturally-occurring DNA fragment termini correlate with methylation at CpG sites in hair and blood plasma cell-free DNA	29
Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin	28
Molecular characterization of recombinant LSDV isolates from 2022 outbreak in Indonesia through phylogenetic networks and whole-genome SNP-based analysis	28
Genome-wide identification, expression analysis of the R2R3-MYB gene family and their potential roles under cold stress in Prunus sibirica	28
Circle-seq analysis reveals the involvement of eccDNAs in salt stress response of bermudagrass (Cynodon dactylon)	28
Genome-wide identification of AP2/ERF gene family in Coptis Chinensis Franch reveals its role in tissue-specific accumulation of benzylisoquinoline alkaloids	28
Response of DNA methylation and gene expression to light treatments in Norway spruce [Picea abies (L.) Karst.]	28
Genome-wide identification and evolutionary analysis of NRAMP family genes in tomato (Solanum lycopersicum L.) under cadmium and salt stress	28
Negative effect of seasonal heat stress on testis morphology and transcriptomes in Angora rabbit	28
Genetic and genomic analysis of reproduction traits in holstein cattle using SNP chip data and imputed sequence level genotypes	28
plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style	27
Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes	27
Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment	27
Taxonomy, comparative genomics of Mullein (Verbascum, Scrophulariaceae), with implications for the evolution of Verbascum and Lamiales	27
Gut microbiota profiling variated during colorectal cancer development in mouse	27
Fusion_f5C-Pred: a dual-branch feature fusion framework for 5-formylcytosine modification sites prediction	27
Effects of hibernation on two important contractile tissues in tibetan frogs, Nanorana parkeri: a perspective from transcriptomics and metabolomics approaches	27
Identification of regulatory loci and candidate genes related to body weight traits in broilers based on different models	27
Alternative splicing perspective to prey preference of environmentally friendly biological agent Cryptolaemus montrouzieri	27
Differential miRNA expression profiles in the bone marrow of Beagle dogs at different stages of Toxocara canis infection	27
Characterization of a strain-specific CD-1 reference genome reveals potential inter- and intra-strain functional variability	26
Transcriptome analysis of the endangered dung beetle Copris tripartitus (Coleoptera: Scarabaeidae) and characterization of genes associated to immunity, growth, and reproduction	26
SWATH-MS based proteomics reveals the role of photosynthesis related proteins and secondary metabolic pathways in the colored leaves of sweet olive (Osmanthus fragrans)	26
Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis	26
Benchmarking full-length transcript single cell mRNA sequencing protocols	26
Alternative splicing induces sample-level variation in gene–gene correlations	26
Novel insights into the Leishmania infantum transcriptome diversity of protein-coding and non-coding sequences in both stages of parasite development using nanopore direct RNA sequencing	26
Characterization of Danube Swabian population samples on a high-resolution genome-wide basis	26
IL-33 priming and antigenic stimulation synergistically promote the transcription of proinflammatory cytokine and chemokine genes in human skin mast cells	26
Survival of the fittest: genomic investigations of the bay scallop reveal a shift in population structure through a summer mortality event	26
Integrated analysis of single-cell and bulk RNA sequencing data reveals prognostic characteristics of lysosome-dependent cell death-related genes in osteosarcoma	25
Transcriptome analysis reveals key defense genes associated with resistance to banana blood disease	25
MitoDelta: identifying mitochondrial DNA deletions at cell-type resolution from single-cell RNA sequencing data	25
Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)	25
Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits	25
Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans	25
The bHLH transcription factor OsbHLH148 negatively regulates rice tiller number and grain yield through an integrated transcriptional network	25
Genome-wide detection of RNA editing events during the hair follicles cycle of Tianzhu white yak	25
Genome-wide identification and evolution of the tubulin gene family in Camelina sativa	25
Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR	25
Genomic and phenotypic characterization of Vibrio cholerae strain SU109: a genomic investigation of a shrimp-associated strain from Bangladesh	25
The molecular basis underlying the differential development of immune organs between Huaifu and Cherry Valley ducks during early growth	25
Genome-wide identification, expression analysis, and functional study of the bZIP transcription factor family and its response to hormone treatments in pea (Pisum sativum L.)	25
Bioinformatics analysis of the Microsporidia sp. MB genome: a malaria transmission-blocking symbiont of the Anopheles arabiensis mosquito	25
scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data	25
Genome-wide association study considering genotype-by-environment interaction for productive and reproductive traits using whole-genome sequencing in Nellore cattle	25
HTS and scRNA-seq revealed that the location and RSS quality of the mammalian TRBV and TRBJ genes impact biased rearrangement	25
Intron size minimisation in teleosts	24
Chlamydia suis undergoes interclade recombination promoting Tet-island exchange	24
Integrative analysis of the steroidal alkaloids distribution and biosynthesis of bulbs Fritillariae Cirrhosae through metabolome and transcriptome analyses	24
A transcriptome-wide analysis provides novel insights into how Metabacillus indicus promotes coral larvae metamorphosis and settlement	24
A probabilistic approach to visualize the effect of missing data on PCA in ancient human genomics	24
Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation	24
Emanating candidate genes responsible for fruit quality traits in citrus through GBS-based genome wide association studies	24
Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data	24
Genome-wide identification of heterotrimeric G protein genes in castor (Ricinus communis L.) and expression patterns under salt stress	24
Prior exposure to hypoxia alters DNA methylation patterns in the eastern oyster	24
The landscape of the long non-coding RNAs in developing mouse retinas	24
Multi-tissue metabolomic profiling reveals the crucial metabolites and pathways associated with scallop growth	24
Analysis of miRNAs in milk of four livestock species	24

Identification of sugar transporter MrSTP20 responding to high-salt stress and hexoses induction in apple rootstock (Malus robusta Rehd)	24
Whole transcriptome sequencing of different hair types in inner Mongolian cashmere goats	24
The evolutionary dynamics of genome sizes and repetitive elements in Ensifera (Insecta: Orthoptera)	24
Transcriptome and co-expression network analysis reveal the genetic basis of cell wall components in maize stalks	24
RNA sequencing and histology analysis provide insights into the formation of hollow fruits in cucumber	24
Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance	23
Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear	23
Genomic formation of Tibeto-Burman speaking populations in Guizhou, Southwest China	23
Genome sequencing reveals novel causative structural and single nucleotide variants in Pakistani families with congenital hypogonadotropic hypogonadism	23
Genomes of the Orestias pupfish from the Andean Altiplano shed light on their evolutionary history and phylogenetic relationships within Cyprinodontiformes	23
Integrated microRNA and whole-transcriptome sequencing reveals the involvement of small and long non-coding RNAs in the fiber growth of ramie plant	23
Comparative genomics of microalgae: molecular mechanisms underlying efficient CO₂ assimilation	23
Identification of key genes for triacylglycerol biosynthesis and storage in herbaceous peony (Paeonia lactifolra Pall.) seeds based on full-length transcriptome	23
Genome-wide association study identifies genomic regions associated with key reproductive traits in Korean Hanwoo cows	23
Whole genome sequencing analyses of Chinese Glaesserella parasuis isolates reveal insights into their genomic characterization, virulence genes and antibiotic resistance genes	23
Comparative genotypic characterization related to antibiotic resistance phenotypes of clinical carbapenem-resistant Acinetobacter baumannii MTC1106 (ST2) and MTC0619 (ST25)	23
High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata	23
Long-read sequencing of extrachromosomal circular DNA and genome assembly of a Solanum lycopersicum breeding line revealed active LTR retrotransposons originating from S. Peruvianum L. introgressions	23
Cyclin-dependent kinases (CDKs) are key genes regulating early development of Neptunea arthritica cumingii: evidence from comparative transcriptome and proteome analyses	23
Chemical composition determination and transcriptomic analyses provide insight into the differences between wild and grafted Semen Ziziphi Spinosae	23
Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis	23
A meta-analysis of public RNA-Seq data identifies conserved stress responses in rainbow trout	22
Performance comparison of four exome capture platforms on DNBSEQ-Series high throughput sequencer	22
Transcriptome and WGCNA reveals the potential genetic basis of photoperiod-sensitive male sterility in soybean	22
Microscale total genomic DNA was used to explore the complete mitochondrial genomes of two biting midge species of the family Ceratopogonidae (Insecta: Diptera)	22
Genome-wide identification of MBD gene family members in Eleutherococcus senticosus with their expression motifs under drought stress and DNA demethylation	22
OsDof1 enhances rice (Oryza sativa L.) lodging resistance through suppression of tryptophan-dependent auxin biosynthesis	22
Genome-wide identification, characterization, and expression analysis of the MADS-box gene family in grass pea (Lathyrus sativus) under salt stress conditions	22
Complete chloroplast genomes of 13 species of sect. Tuberculata Chang (Camellia L.): genomic features, comparative analysis, and phylogenetic relationships	22
Genomic and functional insights into commensal streptococci with anti-pneumococcal activity	22
Star allele search: a pharmacogenetic annotation database and user-friendly search tool of publicly available 1000 Genomes Project biospecimens	22
Retraction Note: Identification of candidate genes associated with double flowers via integrating BSA-seq and RNA-seq in Brassica napus	22
Potential mutagenicity of aflatoxin B1 in Egyptian spices	22
Splenic comparative transcriptome analysis reveals the immunological mode of undomesticated Gayal (Bos frontalis) for adapting to harsh environments	22
nTChap: an accurate method for polyploid haplotype reconstruction	22
A population genomics approach to unlock the genetic potential of lablab (Lablab purpureus (L.) Sweet), an underutilized tropical forage crop	22
Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp.	22
Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties	22
Comparative analysis of the whole transcriptome landscapes of muscle and adipose tissue in Qinchuan beef cattle	22
Whole exome sequence reveals genetic profiles of primary cardiomyopathy and genotype-phenotype association in Chinese population	22
The different subtelomeric structure among 1RS arms in wheat-rye 1BL.1RS translocations affecting their meiotic recombination and inducing their structural variation	22
RNA-Seq uncovers endogenous NO-induced hormone signal transduction and carbon metabolism in response to PEG stress in alfalfa	22
microRNA regulation of skin pigmentation in golden-back mutant of crucian carp from a rice-fish integrated farming system	22
Whole-genome sequencing of Apis mellifera lamarckii: first comprehensive genomic atlas of Egyptian honeybees reveals pathogen resistance mechanisms and local adaptation signatures	21
Transcriptomic differences in immune- and stress-related pathways associated with artificial rearing in the endangered hog deer (Axis porcinus)	21
Longitudinal multi-omic changes in the transcriptome and proteome of peripheral blood cells after a 4 Gy total body radiation dose to Rhesus macaques	21
Integrated multi-omics analysis of metabolome and transcriptome profiles during bovine adipocyte differentiation reveals functional divergence of FADS2 isoforms in lipid metabolism regulation	21
Genome-wide identification and molecular expression profile analysis of FHY3/FAR1 gene family in walnut (Juglans sigillata L.) development	21
Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana	21
Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh + /trh + genotypes	21
An insight into the draft genome of the Oriental rat flea, Xenopsylla cheopis, together with its Wolbachia endosymbiont	21
A cross-tissue transcriptomic approach decodes glucocorticoid receptor-dependent links to human metabolic phenotypes	21
Comparative transcriptomic analysis of the different developmental stages of ovary in the cuttlefish Sepia pharaonis	21
Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison	21
Investigating the potential role of propionylcarnitine in milk pentadecanoic acid synthesis in Chinese holstein dairy cows using multi-omics analysis	21
Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships	21
Comparative and phylogenetic study on the chloroplast genomes of CMS with the cytoplasm of Aegilops ovata and its maintainer line in wheat	21
Single-nucleus RNA sequencing and lipidomics reveal characteristics of transcriptional and lipid composition in porcine longissimus dorsi muscle	21
Prediction of lipase-specific foldase-dependence in bacterial lipase subfamilies I.1 and I.2	21
Genomic analysis of severe COVID-19 considering or not asthma comorbidity: GWAS insights from the BQC19 cohort	21
Evolutionary signals in metabolic networks of insect endosymbionts revealed through comparative topological modeling	21
Genomic evidence reveals taxonomic oversplitting in a wing dimorphic grasshopper complex Tetrix japonica	21
Short-term impacts of embryonic thermal manipulation in mule duck, a kinetic study: new tools for metabolic programming	21
Genome sequencing and comparative genomics reveal insights into pathogenicity and evolution of Fusarium zanthoxyli, the causal agent of stem canker in prickly ash	21
Physiological and molecular mechanisms of leaf response to high-temperature stress in high-temperature-resistant soybean varieties	21
Trehalose accumulation contributes to enhanced cold stress tolerance in Telenomus remus, a dominant egg parasitoid of Spodoptera frugiperda	21
MitoCOMON: whole mitochondrial DNA sequencing by primer design and long overlapping amplicon assembly	21
Extensive differential DNA methylation between tuberculosis skin test positive and skin test negative cattle	21
Population genome-wide analysis reveals historical divergence and adaptive signals in Rubroshorea leprosula (Dipterocarpaceae), a near-threatened tropical forest tree	21
Building consensus: construction of a juvenile and adult scRNA-seq meta-atlas for dataset comparisons and harmonizing transcriptomic definitions of enteric neuron subtypes	21
Integrative transcriptomics and metabolomics reveal neuroendocrine-lipid crosstalk and adenosine signaling in broiler under heat stress	20
Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae	20
TB-DROP: deep learning-based drug resistance prediction of Mycobacterium tuberculosis utilizing whole genome mutations	20
Identification and expression analysis of the Xyloglucan Transglycosylase/Hydrolase (XTH) gene family under salt stress in cowpea (Vigna unguiculata L.)	20
scFSNN: a feature selection method based on neural network for single-cell RNA-seq data	20
HKDE-LACM: a hybrid model for lactic acid bacteria classification via k-mer and DNABERT-2 embedding fusion with cyclic DE-BO optimization	20
The phylogeny and evolution of blow flies (Diptera: Calliphoridae) from the perspective of mitogenomics	20
Organic acid accumulation pattern and its key genes in Chinese cherry fruits	20
Identification of lncRNA, miRNA and mRNA expression profiles and ceRNA Networks in small cell lung cancer	20
Canine hyper-sociability structural variants associated with altered three-dimensional chromatin state	20
Chloroplast genome comparison and taxonomic reassessment of Polygonatum sensu Lato (Asparagaceae): implications for molecular marker development in traditional medicinal plants	20
Untangling an insect’s virome from its endogenous viral elements	20
Genomic insights into genes expressed specifically during infancy highlight their dominant influence on the neuronal system	20
Transcriptomic basis of sex loss in the pea aphid	20
Investigation of SNP markers for the melatonin production trait in the Hu sheep with bulked segregant analysis	20
The genomic pattern of insertion/deletion variations during rice improvement	20
Single-cell profiling reveals transcriptome dynamics during bovine oocyte growth	20
Silencing of SlERF.F5 affects tolerance to drought, salt and low-temperature stresses in tomato	20
In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera)	20
Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance	20
Chromatin accessibility landscape of a parasitic nematode during embryogenesis	20
Comparison between SNP array and imputed data to estimate population structure and ROH hotspots in horse breeds	20
Genome-wide identification of SNPs associated with body weight in yak	20
GM-lncLoc: LncRNAs subcellular localization prediction based on graph neural network with meta-learning	20
Identification of key genes and metabolites involved in intramuscular fat deposition in Laiwu pigs through combined transcriptomic and lipidomic analyses	20