BMC Genomics

Article	Citations
SPLHRNMTF: robust orthogonal non-negative matrix tri-factorization with self-paced learning and dual hypergraph regularization for predicting miRNA-disease associations	149
Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)	118
Genome-wide identification, expression analysis of the R2R3-MYB gene family and their potential roles under cold stress in Prunus sibirica	104
Salinity-responsive histone PTMs identified in the gills and gonads of Mozambique tilapia (Oreochromis mossambicus)	98
A catalog of gene editing sites and genetic variations in editing sites in model organisms	93
Genomic prediction with non-additive effects in beef cattle: stability of variance component and genetic effect estimates against population size	90
Unraveling the role of male reproductive tract and haemolymph in cantharidin-exuding Lydus trimaculatus and Mylabris variabilis (Coleoptera: Meloidae): a comparative transcriptomics approach	77
Effects of hibernation on two important contractile tissues in tibetan frogs, Nanorana parkeri: a perspective from transcriptomics and metabolomics approaches	75
Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data	67
The expression of RBPJ and its potential role in rheumatoid arthritis	57
HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes	57
Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers	57
De novo assembly and annotation of the singing mouse genome	57
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis	56
Genome-wide identification and expression analysis of the NRT genes in Ginkgo biloba under nitrate treatment reveal the potential roles during calluses browning	53
Alteration of chromosome structure impacts gene expressions implicated in pancreatic ductal adenocarcinoma cells	51
Population genetic study of 17 Y-STR Loci of the Sorani Kurds in the Province of Sulaymaniyah, Iraq	51
Genome-wide identification and expression analysis reveals spinach brassinosteroid-signaling kinase (BSK) gene family functions in temperature stress response	48
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage	47
Genome-wide identification and stress response analysis of cyclophilin gene family in apple (Malus × domestica)	47
peaksat: an R package for ChIP-seq peak saturation analysis	46
Biological factors in the synthetic construction of overlapping genes	46
Genomic insights into the antimicrobial resistance and virulence of Helicobacter pylori isolates from gastritis patients in Pereira, Colombia	45
Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration	42
A targeted antibody-based array reveals a serum protein signature as biomarker for adolescent idiopathic scoliosis patients	42

Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues	41
The effect of induced molting on the testicular physiological remodeling in no-semen roosters	40
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease	40
Genome-wide association study identifies key quantitative trait loci (QTL) for fruit morphometric traits in avocado (Persea spp.)	40
ProEnd: a comprehensive database for identifying HbYX motif-containing proteins across the tree of life	40
Genome-wide identification of polyamine metabolism and ethylene synthesis genes in Chenopodium quinoa Willd. and their responses to low-temperature stress	39
Correction: Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines	39
Autophagy is involved in the toxicity of the biocontrol agent GC16 against Tetranychus pueraricola (Acari: Tetranychidae) based on transcriptomic and proteomic analyses	39
Large-scale integration of meta-QTL and genome-wide association study identifies genomic regions and candidate genes for photosynthetic efficiency traits in bread wheat	39
Assembly and comparative analysis of the complete mitochondrial genome of Brassica rapa var. Purpuraria	39
Correction to: Spatiotemporal expression profle of novel and known small RNAs throughout rice plant development focussing on seed tissues	39
Genomic consequences of intensive inbreeding in miniature inbred pigs	38
Metabolomics, phytohormone and transcriptomics strategies to reveal the mechanism of barley heading date regulation to responds different photoperiod	38
Genome-wide scan for selection signatures reveals novel insights into the adaptive capacity characteristics in three Chinese cattle breeds	37
UTR-Insight: integrating deep learning for efficient 5′ UTR discovery and design	37
Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle	37
Genome-wide association study provided insights into the polled phenotype and polled intersex syndrome (PIS) in goats	37
Genetic effect of an InDel in the promoter region of the NUDT15 and its effect on myoblast proliferation in chickens	37
The multi-omics signatures of telomere length in childhood	37
Caregiver-child interaction and early childhood development among preschool children in rural China: the possible role of blood epigenome-wide DNA methylation	37
Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use	37
Correction: Comparative transcriptome analysis of skin color-associated genes in leopard coral grouper (Plectropomus leopardus)	36
Diversity and evolution analysis of RNA viruses in three wheat aphid species	36
Expression of ABC transporters negatively correlates with ectoine biosynthesis in Halomonas campaniensis under NaCl and ultraviolet mutagenesis treatments revealed by transcriptomic and proteomics com	36
Dexamethasone-induced whitening of rabbit brown adipose tissue: leptin resistance and mitochondrial dysfunction	36
Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes	35
Cold exposure induces lipid dynamics and thermogenesis in brown adipose tissue of goats	35
Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Pisum sativum L	34
The effects of runs-of-homozygosity on pig domestication and breeding	34
Genetic architecture of end-use quality traits in soft white winter wheat	34
Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum	34
Genomic analysis of SBP gene family in Saccharum spontaneum reveals their association with vegetative and reproductive development	34
Integrative multi-omics approach for identifying molecular signatures and pathways and deriving and validating molecular scores for COVID-19 severity and status	34
Genome-wide analysis of polyamine biosynthesis genes in wheat reveals gene expression specificity and involvement of STRE and MYB-elements in regulating polyamines under drought	34
Gut microbiota profiling variated during colorectal cancer development in mouse	34
Ascites-derived hsa-miR-181a-5p serves as a prognostic marker for gastric cancer-associated malignant ascites	34
Examining parent-of-origin effects on transcription and RNA methylation in mediating aggressive behavior in honey bees (Apis mellifera)	34
RNA-Seq analysis of the pyloric caecum, liver, and muscle reveals molecular mechanisms regulating fillet color in rainbow trout	33
Validation of reference genes for whole blood gene expression analysis in cord blood of preterm and full-term neonates and peripheral blood of healthy adults	33
Taxonomy, comparative genomics of Mullein (Verbascum, Scrophulariaceae), with implications for the evolution of Verbascum and Lamiales	33
Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution	33
Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth	33
Genome-wide association analysis reveals a novel QTL CsPC1 for pericarp color in cucumber	33
XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples	32
Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing	32
An in-depth bioinformatic analysis of the novel recombinant lumpy skin disease virus strains: from unique patterns to established lineage	32
Transcriptome analysis reveals fluid shear stress (FSS) and atherosclerosis pathway as a candidate molecular mechanism of short-term low salinity stress tolerance in abalone	32
Quantitative trait loci and candidate genes for yield-related traits of upland cotton revealed by genome-wide association analysis under drought conditions	32
Molecular characterization of recombinant LSDV isolates from 2022 outbreak in Indonesia through phylogenetic networks and whole-genome SNP-based analysis	32
Temperature-induced variation in the transcriptome of maritime pine (Pinus pinaster Ait.) embryogenic masses modulates the phenotype of the derived plants	31

Small open reading frames: a comparative genetics approach to validation	31
Genome-wide identification and expression analysis of the xyloglucan endotransglucosylase/hydrolase gene family in poplar	31
Relationship and distribution of Salmonella enterica serovar I 4,[5],12:i:- strain sequences in the NCBI Pathogen Detection database	31
SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels	31
Negative effect of seasonal heat stress on testis morphology and transcriptomes in Angora rabbit	31
Genome-wide analysis of the P450 gene family in tea plant (Camellia sinensis) reveals functional diversity in abiotic stress	30
Transcriptional response of murine microglia in Alzheimer’s disease and inflammation	30
Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome	30
Identification of regulatory loci and candidate genes related to body weight traits in broilers based on different models	30
Transcriptomic and genomic analysis provides new insights in molecular and genetic processes involved in zucchini ZYMV tolerance	30
Evolutionary genetics of flipper forelimb and hindlimb loss from limb development-related genes in cetaceans	30
plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style	29
Integrated analysis of the transcriptome and hormone metabolome elucidates the regulatory mechanisms governing walnut bud germination	29
Genome-wide and comparative phylogenetic analysis of senescence-associated NAC transcription factors in sunflower (Helianthus annuus)	29
Comprehensive analysis of RNA m6A methylation in pressure overload-induced cardiac hypertrophy	29
Insertion of an endogenous Jaagsiekte sheep retrovirus element into the BCO2 - gene abolishes its function and leads to yellow discoloration of adipose tissue in Norwegian Spælsau (Ovis aries)	29
Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs	29
Genome-wide identification of AP2/ERF gene family in Coptis Chinensis Franch reveals its role in tissue-specific accumulation of benzylisoquinoline alkaloids	29
Revised time estimation of the ancestral human chromosome 2 fusion	28
Dynamic physiological and transcriptomic changes reveal memory effects of salt stress in maize	28
Clonostachys rosea ‘omics profiling: identification of putative metabolite-gene associations mediating its in vitro antagonism against Fusarium graminearum	28
Comprehensive genome-wide analysis of calmodulin-binding transcription activator (CAMTA) in Durio zibethinus and identification of fruit ripening-associated DzCAMTAs	28
Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin	28
Beta-galactosidase gene family genome-wide identification and expression analysis of members related to fruit softening in melon (Cucumis melo L.)	28
Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in foxtail millet (Setaria italica L.)	27
Genome-wide landscape of runs of homozygosity and differentiation across Egyptian goat breeds	27
A novel isatin Schiff based cerium complex: synthesis, characterization, antimicrobial activity and molecular docking studies	27
Inhibition of CUB and sushi multiple domains 1 (CSMD1) expression by miRNA-190a-3p enhances hypertrophic scar-derived fibroblast migration in vitro	27
Genetic and genomic analysis of reproduction traits in holstein cattle using SNP chip data and imputed sequence level genotypes	27
Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)	27
Identifying genomic islands with deep neural networks	27
Analysis of miRNAs in milk of four livestock species	26
Differential miRNA expression profiles in the bone marrow of Beagle dogs at different stages of Toxocara canis infection	26
Whole exome sequence reveals genetic profiles of primary cardiomyopathy and genotype-phenotype association in Chinese population	26
Characterization of Danube Swabian population samples on a high-resolution genome-wide basis	26
Genome-wide association study considering genotype-by-environment interaction for productive and reproductive traits using whole-genome sequencing in Nellore cattle	26
Survival of the fittest: genomic investigations of the bay scallop reveal a shift in population structure through a summer mortality event	26
Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear	26
A population genomics approach to unlock the genetic potential of lablab (Lablab purpureus (L.) Sweet), an underutilized tropical forage crop	26
Genomic analysis of severe COVID-19 considering or not asthma comorbidity: GWAS insights from the BQC19 cohort	26
Cruxome: a powerful tool for annotating, interpreting and reporting genetic variants	26
The landscape of the long non-coding RNAs in developing mouse retinas	25
Alternative splicing level related to intron size and organism complexity	25
Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis	25
Small RNA sequencing and bioinformatics analysis of RAW264.7-derived exosomes after Mycobacterium Bovis Bacillus Calmette-Guérin infection	25
SWATH-MS based proteomics reveals the role of photosynthesis related proteins and secondary metabolic pathways in the colored leaves of sweet olive (Osmanthus fragrans)	25
Comparative genotypic characterization related to antibiotic resistance phenotypes of clinical carbapenem-resistant Acinetobacter baumannii MTC1106 (ST2) and MTC0619 (ST25)	25
Identification of lncRNA, miRNA and mRNA expression profiles and ceRNA Networks in small cell lung cancer	25
Transcriptome analysis of five ovarian stages reveals gonad maturation in female Macrobrachium nipponense	25
Genome sequencing reveals novel causative structural and single nucleotide variants in Pakistani families with congenital hypogonadotropic hypogonadism	25
Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)	25
Integrated multi-omics analysis of metabolome and transcriptome profiles during bovine adipocyte differentiation reveals functional divergence of FADS2 isoforms in lipid metabolism regulation	24
Multi-tissue metabolomic profiling reveals the crucial metabolites and pathways associated with scallop growth	24
A cross-tissue transcriptomic approach decodes glucocorticoid receptor-dependent links to human metabolic phenotypes	24
Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA	24
Single-cell profiling reveals transcriptome dynamics during bovine oocyte growth	24
The evolutionary dynamics of genome sizes and repetitive elements in Ensifera (Insecta: Orthoptera)	24
Molecular genetic diversity and population structure analyses of rutabaga accessions from Nordic countries as revealed by single nucleotide polymorphism markers	24
Genome-wide identification and evolution of the tubulin gene family in Camelina sativa	24
Genome-wide identification of heterotrimeric G protein genes in castor (Ricinus communis L.) and expression patterns under salt stress	24
Identification of key genes for triacylglycerol biosynthesis and storage in herbaceous peony (Paeonia lactifolra Pall.) seeds based on full-length transcriptome	24
Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment	24
Extensive differential DNA methylation between tuberculosis skin test positive and skin test negative cattle	24
Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis	24
Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae	24
Genome-wide identification of R2R3-MYB gene family and association with anthocyanin biosynthesis in Brassica species	24
Physiological and molecular mechanisms of leaf response to high-temperature stress in high-temperature-resistant soybean varieties	24
Alternative splicing perspective to prey preference of environmentally friendly biological agent Cryptolaemus montrouzieri	24
microRNA regulation of skin pigmentation in golden-back mutant of crucian carp from a rice-fish integrated farming system	24
Alternative splicing induces sample-level variation in gene–gene correlations	24
Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data	23
Transcriptome and WGCNA reveals the potential genetic basis of photoperiod-sensitive male sterility in soybean	23
The fiber diameter traits of Tibetan cashmere goats are governed by the inherent differences in stress, hypoxic, and metabolic adaptations: an integrative study of proteome and transcriptome	23
Longitudinal multi-omic changes in the transcriptome and proteome of peripheral blood cells after a 4 Gy total body radiation dose to Rhesus macaques	23
Long-read sequencing of extrachromosomal circular DNA and genome assembly of a Solanum lycopersicum breeding line revealed active LTR retrotransposons originating from S. Peruvianum L. introgressions	23
Correction to: Genome-wide development of insertiondeletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification	23
Bioinformatics analysis of the Microsporidia sp. MB genome: a malaria transmission-blocking symbiont of the Anopheles arabiensis mosquito	23
Genomic formation of Tibeto-Burman speaking populations in Guizhou, Southwest China	23
Intron size minimisation in teleosts	23
The different subtelomeric structure among 1RS arms in wheat-rye 1BL.1RS translocations affecting their meiotic recombination and inducing their structural variation	23

Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma	23
Genome-wide identification of MBD gene family members in Eleutherococcus senticosus with their expression motifs under drought stress and DNA demethylation	23
Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation	23
Correction: Genetic diversity and signatures of selection for heat tolerance and immune response in Iranian native chickens	23
Integrated analysis of single-cell and bulk RNA sequencing data reveals prognostic characteristics of lysosome-dependent cell death-related genes in osteosarcoma	23
Multi-locus genome-wide association mapping for spike-related traits in bread wheat (Triticum aestivum L.)	22
Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans	22
Chemical composition determination and transcriptomic analyses provide insight into the differences between wild and grafted Semen Ziziphi Spinosae	22
QTL mapping for starch paste viscosity of rice (Oryza sativa L.) using chromosome segment substitution lines derived from two sequenced cultivars with the same Wx allele	22
High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata	22
Cyclin-dependent kinases (CDKs) are key genes regulating early development of Neptunea arthritica cumingii: evidence from comparative transcriptome and proteome analyses	22
Potential mutagenicity of aflatoxin B1 in Egyptian spices	22
Chlamydia suis undergoes interclade recombination promoting Tet-island exchange	22
Transcriptome analysis of the endangered dung beetle Copris tripartitus (Coleoptera: Scarabaeidae) and characterization of genes associated to immunity, growth, and reproduction	22
Comparative analysis of the whole transcriptome landscapes of muscle and adipose tissue in Qinchuan beef cattle	22
Characterization of a strain-specific CD-1 reference genome reveals potential inter- and intra-strain functional variability	22
HTS and scRNA-seq revealed that the location and RSS quality of the mammalian TRBV and TRBJ genes impact biased rearrangement	22
Integrated microRNA and whole-transcriptome sequencing reveals the involvement of small and long non-coding RNAs in the fiber growth of ramie plant	22
Comparative transcriptomic analysis of the different developmental stages of ovary in the cuttlefish Sepia pharaonis	22
Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli	22
Seminal fluid proteins induce transcriptome changes in the Aedes aegypti female lower reproductive tract	22
Genome-wide identification of the NLR gene family in Haynaldia villosa by SMRT-RenSeq	22
Integrative analysis of the steroidal alkaloids distribution and biosynthesis of bulbs Fritillariae Cirrhosae through metabolome and transcriptome analyses	21
Genome-wide identification and molecular expression profile analysis of FHY3/FAR1 gene family in walnut (Juglans sigillata L.) development	21
RNA-Seq uncovers endogenous NO-induced hormone signal transduction and carbon metabolism in response to PEG stress in alfalfa	21
Canine hyper-sociability structural variants associated with altered three-dimensional chromatin state	21
Evaluation of methods to detect circular RNAs from single-end RNA-sequencing data	21
Identification and response analysis of xyloglucan endotransglycosylase/hydrolases (XTH) family to fluoride and aluminum treatment in Camellia sinensis	21
Genome-wide detection of RNA editing events during the hair follicles cycle of Tianzhu white yak	21
Whole-transcriptome sequencing reveals a vernalization-related ceRNA regulatory network in chinese cabbage (Brassica campestris L. ssp. pekinensis)	21
A transcriptome-wide analysis provides novel insights into how Metabacillus indicus promotes coral larvae metamorphosis and settlement	21
Genomes of the Orestias pupfish from the Andean Altiplano shed light on their evolutionary history and phylogenetic relationships within Cyprinodontiformes	21
Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits	21
Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance	21
Genome-wide identification, characterization, and expression analysis of the MADS-box gene family in grass pea (Lathyrus sativus) under salt stress conditions	21
Genome-wide association screening and verification of potential genes associated with root architectural traits in maize (Zea mays L.) at multiple seedling stages	21
Star allele search: a pharmacogenetic annotation database and user-friendly search tool of publicly available 1000 Genomes Project biospecimens	21
Transcriptome analysis reveals Vernalization is independent of cold acclimation in Arabidopsis	21
Prediction of lipase-specific foldase-dependence in bacterial lipase subfamilies I.1 and I.2	21
Gene silencing, knockout and over-expression of a transcription factor ABORTED MICROSPORES (SlAMS) strongly affects pollen viability in tomato (Solanum lycopersicum)	21
Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana	21
A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers	21
Genome-wide identification, expression analysis, and functional study of the bZIP transcription factor family and its response to hormone treatments in pea (Pisum sativum L.)	21
Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties	21
Genome sequencing and comparative genomics reveal insights into pathogenicity and evolution of Fusarium zanthoxyli, the causal agent of stem canker in prickly ash	21
IL-33 priming and antigenic stimulation synergistically promote the transcription of proinflammatory cytokine and chemokine genes in human skin mast cells	20
Correction to: Deploying new generation sequencing for the study of flesh color depletion in Atlantic Salmon (Salmo salar)	20
ZF-HD gene family in rapeseed (Brassica napus L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses	20
Correction: Comparative genome-wide identification and characterization of SET domain-containing and JmjC domain-containing proteins in piroplasms	20
Microscale total genomic DNA was used to explore the complete mitochondrial genomes of two biting midge species of the family Ceratopogonidae (Insecta: Diptera)	20
Splenic comparative transcriptome analysis reveals the immunological mode of undomesticated Gayal (Bos frontalis) for adapting to harsh environments	20
Effects of glutamate and aspartate on prostate cancer and breast cancer: a Mendelian randomization study	20
Gene co-expression network analysis in zebrafish reveals chemical class specific modules	20
Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response	20
Benchmarking full-length transcript single cell mRNA sequencing protocols	20
Correction: Genome-wide association study for stayability at diferent calvings in Nellore beef cattle	20
In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera)	20
Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh + /trh + genotypes	20
Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships	20
Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison	20
TB-DROP: deep learning-based drug resistance prediction of Mycobacterium tuberculosis utilizing whole genome mutations	20
The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis	20
Single-nucleus RNA sequencing and lipidomics reveal characteristics of transcriptional and lipid composition in porcine longissimus dorsi muscle	20
Complete chloroplast genomes of 13 species of sect. Tuberculata Chang (Camellia L.): genomic features, comparative analysis, and phylogenetic relationships	20
Genome-wide association study identifies genomic regions associated with key reproductive traits in Korean Hanwoo cows	20
Correction to: Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition	20
The compact genome of Caenorhabditis niphades n. sp., isolated from a wood-boring weevil, Niphades variegatus	20
Chromosomal localization of cohesin is differentially regulated by WIZ, WAPL, and G9a	20
Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp.	20
A probabilistic approach to visualize the effect of missing data on PCA in ancient human genomics	20
scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data	20
Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data	20
Genome-wide expression of the residual lung reacting to experimental Pneumonectomy	20
Genome-wide allele frequency studies in Pacific oyster families identify candidate genes for tolerance to ostreid herpesvirus 1 (OsHV-1)	19
Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)	19
Untangling an insect’s virome from its endogenous viral elements	19
Investigation of SNP markers for the melatonin production trait in the Hu sheep with bulked segregant analysis	19
Comprehensive analysis of long non-coding RNA and mRNA expression patterns during seminiferous tubules maturation in Guanzhong dairy goats	19
Complement 3 (C3) within the hypothalamic arcuate nucleus is a potential key mediator of the effect of enhanced nutrition on reproductive development in young bull calves	19
Integrative analysis of transcriptome and metabolism reveals potential roles of carbon fixation and photorespiratory metabolism in response to drought in Shanlan upland rice	19
Genome-wide identification of SNPs associated with body weight in yak	19
An algorithm for annotation and classification of T. cruzi MASP sequences: towards a better understanding of the parasite genetic variability	19
Comparative genomics analysis and virulence-related factors in novel Aliarcobacter faecis and Aliarcobacter lanthieri species identified as potential opportunistic pathogens	19
Global transcriptome analysis reveals resistance genes in the early response of common bean (Phaseolus vulgaris L.) to Colletotrichum lindemuthianum	19
Geometric morphology and population genomics provide insights into the adaptive evolution of Apis cerana in Changbai Mountain	19
Abundant small RNAs in the reproductive tissues and eggs of the honey bee, Apis mellifera	19
From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes	19
Genome-wide identification, characterization, and expression analysis of the transient receptor potential gene family in mandarin fish Siniperca chuatsi	19
Identification of novel alternative splicing associated with mastitis disease in Holstein dairy cows using large gap read mapping	19
Integration of transcriptomics and network analysis reveals co-expressed genes in Frankliniella occidentalis larval guts that respond to tomato spotted wilt virus infection	19
Establishment and validation of the autophagy-related ceRNA network in irreversible pulpitis	19
The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S	19
First core microsatellite panel identification in Apennine brown bears (Ursus arctos marsicanus): a collaborative approach	19
Repeatome diversity in sea anemone genomics (Cnidaria: Actiniaria) based on the Actiniaria-REPlib library	19
Genomic and transcriptomic survey of bryozoan Hox and ParaHox genes with emphasis on phylactolaemate bryozoans	19