Environmental Microbiology

Article	Citations
	91
Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea	82
Enhanced ability of freshwater bacteria to secrete extracellular vesicles upon interaction with virus	79
Issue Information	71
Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L . cidri	63
Long‐Term Impact of the Largest Environmental Disaster in Latin America (Fundão Dam Failure) on Microbial Communities in Lakes of the Doce River Basin, Brazil	63
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION	62
How does metal soil pollution change the plant mycobiome?	56
Assembly and comparative analyses of the Geosiphon pyriformis metagenome	55
Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk	52
The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence	50
Single‐amplified genomes reveal most streamlined free‐living marine bacteria	45
Beyond purified dietary fibre supplements: Compositional variation between cell wall fibre from different plants influences human faecal microbiota activity and growth in vitro	41
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch	40
Edible Fungi Are a Hidden Source of Carbon Monoxide and Carbon Dioxide	38
Prescribed fire selects for a pyrophilous soil sub‐community in a northern California mixed conifer forest	37
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutant	36
When the going gets tough, the tough get going—Novel bacterial AAA + disaggregases provide extreme heat resistance	36
Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics	34
Genomic and Transcriptomic Insights Into the Autotrophic Metabolism on H 2	34
The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche‐specific specialisation	34
Hydrologic History Regulates Microbial Biofilm Diversity and Ecosystem Function	34
Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānu	33
Fossilisation of Fish Soft Tissue in Oxidative Microniches of Anoxic Sediments	33
A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance	33

Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars	33
Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Funga	32
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt	31
Composition, Growth, Succession, and Function in the Cladophora Microbiome: Insights From Quantita	31
Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pa	31
Toward an accurate mechanistic understanding of Wolbachia‐ induced cytoplasmic incompatibility	30
New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression	30
Leached Nitrate Reduces the Abundance of Antibiotic Resistance Genes in Deep Soil Layers up to 10 m	30
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Issue Information	28
Volatile Organic Compounds of Diverse Origins and Their Changes Associated With Cultivar Decay in a Fungus‐Farming Termite	27
Prophages carrying Zot toxins on different Vibrio genomes: A comprehensive assessment using multilayer	27
Coral holobiont research needs spatial analyses at the microbial scale	26
The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated b	26
Life strategies and metabolic interactions of core microbes during thiosulphate‐based denitrification	26
Anaerobic methanotrophy is stimulated by graphene oxide in a brackish urban canal sediment	26
High diversity of pathogenic Escherichia coli clones carrying mcr‐1 among gulls underlines the need for st	26
Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient	26
Millimetre‐Scale Stratification of Microbial Communities in Hydrothermal Sediments	26
The Bacterial Genus Ramlibacter : Betaproteobacteria Capable of Surviving in Oligotrophic Environments Thanks to Several Shared Genetic Adaptation Traits	26
Effects of Fire Intensity on Soil Microbial Ecology in a Grassland Ecosystem	25
Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populations	25
Issue Information	25
Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground‐level green space	25
Resilient Communities: The Role of Biofilms in Salmonella enterica Ecology, Persistence and Pathog	25
Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA	25
Fine‐scale mapping of physicochemical and microbial landscapes of the coral skeleton	25
Unveiling the Hidden Resistome: A Comprehensive Risk Assessment of Latent Antibiotic Resistance Genes in China's Wastewater	25
Horizontal gene transfer (HGT) and microbial evolution	24
Correction to “Preventing multiresistance: New insights for managing fungal adaptation”	23
Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia	23
Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean	23
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont	23
Substrate Effect on the Contribution of Ammonium and Urea to Marine Nitrification and Nitrous Oxide Production	23
Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis	23
Unravelling Biodiversity, Assembly Mechanisms and Coexistence Patterns of Abundant and Rare Microeukaryotes in Water and Sediment: New Insights From Volcanic Lakes in Arxan Geopark	22
The filamentous γ ‐prefoldin chaperone is not essential for growth and thermal adaptation in Methanocaldococcus jannaschii	22
Issue Information	22
Revealing human impact on natural ecosystems through soil bacterial DNA sampled from an archaeological site	22
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The fitness benefit of pyoverdine cross‐feeding by Pseudomonas protegens Pf‐5	21
Distribution, causal agents, and infection dynamic of emerging ink disease of sweet chestnut in Southern Switzerland	21
Long‐range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa	21
Seasonal variation significantly influenced the stochasticity of community assembly of amphibian symbiotic bacteria	21
Environmental exposure more than plastic composition shapes marine microplastic‐associated bacterial communities in Pacific versus	21
Enteroviruses in Water: Epidemiology, Detection and Inactivation	21
Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs	21
Novel oil‐associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes	21
How good are global DNA ‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation	21
Optimal Cell Length for Exploration and Exploitation in Chemotactic Planktonic Bacteria	21

Seasonal shifts in Fe‐acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling	21
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae	20
How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?	20
Biodegradation in wastewater treatment plants: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	20
Long‐term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species	20
A novel soluble di‐iron monooxygenase from the soil bacterium Solimonas soli	20
Influence of Seasonal Succession on Microbiological and Physiochemical Composition in Shallow Estuarine Sediments	20
Linear scaling between microbial predator and prey densities in the global ocean	20
Environmental Microbiology and Environmental Microbiology Reports	20
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics	20
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi	20
Core rhizosphere microbiome of Panax notoginseng and its associations with belowground biomass and saponin contents	20
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Elevated O 3 concentrations alter the compartment‐specific microbial com	19
Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats	19
Integrated Analysis of Midgut Transcriptome and Microbiome Reveals That Manganese‐Induced Dysbiosis Drives Metabolic Disruption and Developmental Toxicity in	19
Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils	19
Exploring the Exclusive Isolation of Pseudomonas syringae in Peltigera	19
Microscale imaging sheds light on species‐specific strategies for photo‐regulation and photo‐acclimation of microphytobenthic diatoms	19
Inhibition of nitrous oxide reduction in forest soil microcosms by different forms of methanobactin	19
Correction to “Five structural genes required for ceramide synthesis in Caulobacter and for bacter	19
Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov)	19
Membrane lipid renovation in Pseudomonas aeruginosa ‐ implications for phage therapy?	19
An Explicit Test of Kill the Winner: Protistan Grazing and Phage Lysis Differentially Impact Fast‐Growing Bacterial Taxa in the Coastal Antarctic	19
Initially Coexisting Endosymbionts Migrate Into Different Tissues During Ontogeny of Host Cicadas	18
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems	18
High‐Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant‐Diseased Blueberry Farm Soils From New Jersey, USA	18
Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions	18
Iron Sulfides Produced by Thermococcales: An Iron Detoxification Mechanism	18
Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia	18
Genome‐Scale Model of Rhizopus microsporus : Metabolic integration of a fungal holobiont with its bacterial and viral endosymbionts	18
Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes	18
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Countrywide inter‐epidemic region migration pattern suggests the role of southwestern population in wheat stripe rust epidemics in China	18
Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)	18
Microbiome Stability Is Linked to Acropora Coral Thermotolerance in Northwestern Philippines	18
Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors	18
Experimental evidence that lignin‐modifying enzymes are essential for degrading plant cell wall lignin by Pleurotus ostreatus using <	17
Respiratory protein interactions in Dehalobacter sp. strain 8M	17
Novel broad‐spectrum bacteriophages against Xanthomonas oryzae and their biocontrol potential in rice bacterial diseases	17
Microbial biofilms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	17
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Bacterial Dynamics in Newly Settled Acropora kenti : Insights From Inoculations With Individual Probiotic Candidates	17
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Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication	17
Rehabilitation of the ‘bad guys’ for biocontrol applications	17
Issue Information	17
Hierarchical phylogenetic community assembly of soil protists in a temperate agricultural field	17
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Uniform selective pressures within redox zones drive gradual changes in microbial community composition in hadal sediments	17
Biodiversity, Distribution and Ecological Interactions of Algal‐Bacterial Biofilms in Wastewater Treatment Systems	17
Selective Antimicrobial Activity of Slightly Acidic Electrolyzed Water: Differential Effects on Harmful and Beneficial Bacteria in Microbial Fermentation Systems	17
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Production and utilization of pseudocobalamin in marine Synechococcus cultures and communities	17
Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions	16
The cAMP‐PKA signalling pathway regulates hyphal growth, conidiation, trap morphogenesis, stress tolerance, and autophagy in A	16
Selective Pressure Influences Inter‐Biome Dispersal in the Assembly of Saline Microbial Communities	16
Toward a molecular understanding of fluoride stress in a model Pseudomonas strain	16
Adaptation of Listeria monocytogenes to perturbation of c‐di‐AMP metabolism underpins its role in osmo	16
Antibiotic Persister Cells in Acinetobacter baumannii : Overview of Molecular Mechanisms and Remov	16
Bacteriophages vehiculate a high amount of antibiotic resistance determinants of bacterial origin in the Orne River ecosystem	16
Denitrification fractionates N and O isotopes of nitrate following a ratio independent of carbon sources in freshwaters	16
Diverse viruses of marine archaea discovered using metagenomics	15
Genetic Diversity and Anatoxin Profiles of Freshwater Benthic Cyanobacteria From Nova Scotia (Canada)	15
Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments	15
Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air	15
The Dairy Ruminant Gut Microbiome: Profile, Responsiveness to Seasonality and Impact on Milk Quality	15
Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types	15
Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in spider hosts	15
Correction to “How to Identify and Quantify the Members of the Bacillus Genus?”	15
Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters	15
Golgi‐localized calcium/manganese transporters FgGdt1 and FgPmr1 regulate fungal development and v	15
Multi‐omics analysis of antagonistic interactions among free‐living Pseudonocardia from diverse ecosystems	15
Isolation and characterization of a phage collection against Pseudomonas putida	15
Marine microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	14
Coexistence Theory for Microbial Ecology, and Vice Versa	14
Tolerance to Herbicides and Resistance to Antibacterial Drugs of Bacterial Isolates From the Guarani Aquifer System (Brazil)	14

Following the flow—Microbial ecology in surface‐ and groundwaters in the glacial forefield of a rapidly retreating glacier in Iceland	14
Microbial Community of a Sandy Beach Subterranean Estuary is Spatially Heterogeneous and Impacted by Winter Waves	14
Identification of dominant taxa of sooty moulds and their impact on the leaf microbiome	14
Continuous Rice Cultivation Increases Celery Yield by Enhancing Plant Beneficial Bacteria in Rice‐Celery Rotations	14
Web Alert: Microbes and plastics: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	14
Stability of a dominant sponge‐symbiont in spite of antibiotic‐induced microbiome disturbance	14
Differential apicomplexan presence predicts thermal stress mortality in the Mediterranean coral Paramuricea clavata	14
Microecosystem of yak rumen on the Qinghai‐Tibetan Plateau is stable and is unaffected by soil or grass microbiota	14
Percent‐Level Copper Mineralisation Promoted by Copper‐Tolerant Iron‐Oxidising Bacteria in Circumneutral Mine Drainage	13
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra	13
Pandemic Vibrio cholerae and the Environmental Reservoir Hypothesis—Outstanding Questions Central	13
The 2‐methylpropene degradation pathway in Mycobacteriaceae family strains	13
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples	13
The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress	13
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water	13
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber	13
Application of Nano Silica Is Associated With Enhanced Wheat Resistance to Fusarium Crown Rot via Regulation of Metabolic Pathways and Soil Microbial Community	13
The bianchetto truffle ( Tuber borchii ) a lead‐resistant ectomycorrhizal fungus increases	13
Distribution and Feeding of Hexatilemonas jangsaensis , a Novel Cosmopolitan Member of the Uncultured Marine Apusomonad Clade	13
New Strains of the Deep Branching Streptophyte Streptofilum : Phylogenetic Position, Cell Biological and Ecophysiological Traits, and Description of	13
Warming Seawater Temperature and Nutrient Depletion Alters Microbial Community Composition on a Foundational Canopy Kelp Species	13
Cold Surface Waters of the Sub‐Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels	13
Hydrazine Synthase From Anammox Is Inhibited by Linear and Aromatic Alkynes	12
Microbial Metabolism and Disease Virulence Changes Across Day and Night in Coral Black Band Disease Lesions	12
Drivers of Marine Phytoplankton Diversity and Connectivity in the Galápagos Archipelago Spanning an ENSO Cycle	12
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Gene expression in the microbial consortia of colonial Microcystis aeruginosa ‐a potential buoyant particulate biofilm	12
Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning	12
Adaptive Responses of Cyanobacteria to Phosphate Limitation: A Focus on Marine Diazotrophs	12
Can we manage microbial systems to enhance carbon storage?	12
Complex and flexible catabolism in Aromatoleum aromaticum   pCyN1	12
Short‐term plastisphere colonization dynamics across six plastic types	12
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Issue Information	12
Structural and functional microbial diversity in deadwood respond to decomposition dynamics	12
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms	12
Wolbachia Feminises a Spider Host With Assistance From Co‐Infecting Symbionts	12
Soil Functionality Undermined by Symbiotic Fungal Decline Following Forest Conversion	12
Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variat	12
Antidepressants: A new front in the war against antibiotics resistance	12
Continental‐scale niche differentiation of dominant topsoil archaea in drylands	12
Growth of nitrite‐oxidizing Nitrospira and ammonia‐oxidizing Nitrosomonas in marine recirculating tricklin	12
Correction to “Unveiling Unusual Ecofunctional Traits of Endozoicomonas Species Through Comprehensive Comparative Genomics”	12
High‐Temporal Resolution of Microbial Food Web Dynamics and Structure During Phytoplankton Blooms in the Baltic Sea	11
Microdiversity in marine pelagic ammonia‐oxidizing archaeal populations in a Mediterranean long‐read metagenome	11
Use of Microbial Biofilms to Assess Groundwater Quality in Karstic Ecosystems	11
Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities—Secretion of primary and secondary metabolites	11
Issue Information	11
Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria	11
Regulation of environmental stress responses: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	11
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A Single Amino Acid Substitution in CspA Increases Germination Sensitivity and Broadens Bile Salt Germinant Specificity in Clo	11
Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter	11
Polar flagellar wrapping and lateral flagella jointly contribute to Shewanella putrefaciens environmental spreading	11
Marine Bacterioplankton Composition Predicts Oxygen Consumption During Dissolved Organic Matter Degradation Experiments	11
Correction to “Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta ”	11
Towards Functional Fertilisers: Feed Composition Shapes Microbial Community Structure and Viability in Black Soldier Fly ( Hermetia illucens	11
Identification and Global Distribution of a Core Microbiome From High‐Arctic Lakes	11
Histone deacetylase SirE regulates development, DNA damage response and aflatoxin production in Aspergillus flavus	11
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Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils	11
Gene Expression by a Model Fungus in the Ascomycota Provides Insight Into the Decay of Fungal Necromass	11
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra	11
Photoelectron‐promoted metabolism of sulphate‐reducing microorganisms in substrate‐depleted environments	11
Illuminating the dark metabolome of Pseudo‐nitzschia –microbiome associations	11
Correction to “ Azospirillum baldaniorum Sp245 exploits Pseudomonas fluorescens A506	11
Data‐driven identification of major axes of functional variation in bacteria	11
Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field‐caught or laboratory‐reared mosquitoes	11
Dynamics and Eco‐Genomics of Baltic Sea Nitrifiers: Seasonality, Niches, Interactions and Genomic Uniqueness	11
Issue Information	11
Uptake of inorganic and organic phosphorus compounds by two marine sponges and their associated bacterial communities in aquaria	11
Vertical Distribution of Phyllosphere Microbial Diversity in a Subtropical Forest: Increase From Canopy to Forest Floor	11
ActJK Signal Transduction System Contributes to Copper and Zinc Resistance in Sinorhizobium meliloti	11
The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet	11
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Core Microbial Taxa Strengthen Root Microbial Network Stability Under Drought Stress	10
Dissecting host‐microbiome interaction effects on phytoplankton microbiome composition and diversity	10
Exopolysaccharides amylovoran and levan contribute to sliding motility in the fire blight pathogen Erwinia amylovora	10
Genome‐resolved metagenomics reveals diverse taxa and metabolic complexity in Antarctic lake microbial structures	10
Deciphering interactions between the marine dinoflagellate Prorocentrum lima and the fungus	10
ZfpA ‐Dependent Quorum Sensing Shifts in Morphology and Secondary Metabolism in Aspergillus flavus	10
Genomic and Ecological Flexibility Shape the Global Distribution of a Black Fungus	10
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Biocrust diazotrophs and bacteria rather than fungi are sensitive to chronic low N deposition	10
Rapid Icm/Dot T4SS Inactivation Prevents Resuscitation of Heat‐Induced VBNC Legionella pneumoph	10
Distribution of Surface‐Layer Prokaryotes in the Western Arctic Ocean: Responses to Pacific Water Inflow and Sea Ice Melting	10
Seasonal dynamics in microbial trace metals transporters during phytoplankton blooms in the Southern Ocean	10
Bacterioplankton dispersal and biogeochemical function across Alaskan Arctic catchments	10
Is Everything Everywhere? Dispersal Limitation Impacts Methanotroph Community Functioning	10
Anaerobic Limonene Metabolism in a Methanogenic Enrichment Involves a Glycine Radical Enzyme	10
How to reconnect mycorrhizal research with natural environments	10
Distribution of Iron Importers and Ecological Traits in Pseudomonas Species Highlights the Potenti	10
Congo River Bacterioplankton Genomic Diversity Reflects Water Travel Time, Wetland Habitats, and Greenhouse Gases	10