Functional & Integrative Genomics

Article	Citations
The complete plastid genome and characteristics analysis of Achillea millefolium	440
Interplay of calcium signaling and ERF-VII stability in plant hypoxia tolerance	171
RNA sequencing in Artemisia annua L explored the genetic and metabolic responses to hardly soluble aluminum phosphate treatment	101
Major regulators of the multi-step metastatic process are potential therapeutic targets for breast cancer management	73
Exploring circular RNAs as biomarkers for Parkinson’s disease and their expression changes after aerobic exercise rehabilitation	72
mmu-microRNA-92a-3p attenuates pulmonary fibrosis by modulating Cpeb4-mediated Smad2/3 signaling pathway	66
Circ-IP6K2 suppresses tumor progression by modulating the miR-1292-5p/CAMK2N1 signal in clear cell renal cell carcinoma	61
TFAP2A-regulated CRNDE enhances colon cancer progression and chemoresistance via RIPK3 interaction	60
Identification of the STY13 gene family across the entire genome and an analysis of the essential function of GhSTY13-12 in cotton’s response to abiotic stress	54
Nuclear integration of MYB36 and APX-1 genes impart heat tolerance in wheat	49
CRISPR/Cas9 editing of wheat Ppd-1 gene homoeologs alters spike architecture and grain morphometric traits	45
CmirC update 2024: a multi-omics database for clustered miRNAs	42
Retraction Note: Molecular subtypes based on PANoptosis-related genes and tumor microenvironment infiltration characteristics in lower-grade glioma	41
GABPB1 activates transcription of ITPR3 and EMT in OSCC progression	40
Construction of a pancreatic cancer prediction model for oxidative stress-related lncRNA	39
Integrative genomics and genetics from evolutionary insights to precision breeding in peanuts (Arachis Hypogaea L.)	37
The impact of the Hedgehog signal pathway on the tumor immune microenvironment of gastric adenocarcinoma by integrated analysis of scRNA-seq and RNA-seq datasets	37
Genomic insights into Rhizobium anhuiense IY2 isolated from Trifolium caudatum root nodules	37
LncRNA-encoded peptides: the case of the lncRNA gene located downstream of EIN2	36
Epigenetic silencing of MSTN via m6A modification underlies the renoprotective effects of engineered MSC exosomes with RBM15 depletion in diabetic nephropathy	35
Integrative genetic analysis reveals shared genetic architecture underlying coronary artery disease, CT-Defined coronary atherosclerosis, and cardiometabolic risk factors	35
Erythrocyte miRNA-92a-3p interactions with PfEMP1 as determinants of clinical malaria	34
Linking genomic and proteomic signatures to brain amyloid burden: insights from GR@ACE/DEGESCO	34
Rice WRKY13 TF protein binds to motifs in the promoter region to regulate downstream disease resistance-related genes	34
DUBR non-coding RNA regulates gene expression by affecting AP-1 enhancer accessibility	33

Integrated multi-omics analysis reveals key molecular mechanisms underlying fibroproliferation and immune dysregulation in keloids	33
Purifying selection drove the adaptation of mitochondrial genes along with correlation of gene rearrangements and evolutionary rates in two subfamilies of Whitefly (Insecta: Hemiptera)	33
CircNOX4 promotes proliferation and resistance by regulating the hsa-miR-6884-5p/YWHAG Axis and ERK signaling pathway in cholangiocarcinoma	33
Harnessing breeding and biotechnological innovations for global food security under climate change	32
The resilient cotton plant: uncovering the effects of stresses on secondary metabolomics and its underlying molecular mechanisms	32
A multi-scale graph frequency network for structural and functional region analysis in spatial transcriptomics	32
Exploring the glycolytic cross-talk genes between inflammatory bowel disease and colorectal cancer	31
Multi-omics approaches: transforming the landscape of natural product isolation	31
CRISPR detection in metagenome-assembled genomes (MAGs) of coal mine	31
RETRACTED ARTICLE: ITGA3 acts as a purity-independent biomarker of both immunotherapy and chemotherapy resistance in pancreatic cancer: bioinformatics and experimental analysis	31
Dynamic cellular composition and immune landscape revealed by single-cell transcriptome profiling in a brain arteriovenous malformation	30
Prediction of chemoresistance in ovarian cancer based on deep learning with pathological images	28
MYC-driven TRIM27 upregulation promotes prostate cancer progression by enhancing CANX ubiquitination and activating PI3K/AKT signaling	26
Regulatory dynamics of Nanog in chondrocyte dedifferentiation: role of KLF4/p53 and p38/AKT signaling	26
IL-1R8 expression in DLBCL regulates NK cell recruitment and influences patient prognosis	26
Identification and mechanistic analysis of shared biomarkers and pathogenesis in acute pancreatitis and sepsis based on differential gene expression and protein interaction networks	25
Transcription factor Dp-1 knockdown downregulates thymidine kinase 1 expression to protect against proliferation and epithelial-mesenchymal transition in cervical cancer	25
RETRACTED ARTICLE: Identification of biomarkers of hepatocellular carcinoma gene prognosis based on the immune-related lncRNA signature of transcriptome data	24
CircDCAF6 promotes myoblast differentiation by inhibiting the ubiquitination of ACTC1	24
RETRACTED ARTICLE: Comparison of preoperative ultrasound and MRI in the diagnosis of microvascular invasion in hepatocellular carcinoma	24
Cloning and functional analysis of the DXR gene and promoter region in Osmanthus fragrans var. semperflorens	24
Iodine-125 seed inhibits proliferation and promotes apoptosis of cholangiocarcinoma cells by inducing the ROS/p53 axis	23
Evolution of phenylalanine ammonia-lyase protein family from algae to angiosperm	23
Lipid-lowering activity of mulberry seed unsaturated fatty acids: integrating network pharmacology and experimental validation	22
A novel tRNA-derived fragment tRF-3023b suppresses inflammation in RAW264.7 cells by targeting Cul4a through NF-κB signaling	22
Regulation of plant epigenetic memory in response to cold and heat stress: towards climate resilient agriculture	22
Mulberry fruit repairs alcoholic liver injury by modulating lipid metabolism and the expression of miR-155 and PPARα in rats	22
Integrated Nanopore and short-read RNA sequencing identifies dysregulation of METTL3- m6A modifications in endocrine therapy- sensitive and resistant breast cancer cells	22
Mechanism of histone deacetylase HDAC2 in FOXO3-mediated trophoblast pyroptosis in preeclampsia	22
Molecular and genetic insights into secondary metabolic regulation underlying insect-pest resistance in legumes	22
Predicting skin melanoma progression via LAG-3, TIGIT and HAVCR2	22
RETRACTED ARTICLE: Xihuang pill facilitates glioma cell pyroptosis via the POU4F1/STAT3 axis	21
Integrative analysis of circ_DLGAP4, lncRNA KCNQ1OT1, and the miR-9/SOX7 interaction network in chronic kidney disease progression: a case-control study	21
Selenium deficiency is functionally linked with the molecular etiopathogenesis of necrotizing enterocolitis (NEC)	21
Genomic dissection of terminal heat tolerance in synthetic hexaploid derived nested introgression libraries of wheat (Triticum aestivum L.)	21
High-throughput sequencing: a breakthrough in molecular diagnosis for precision medicine	21
Genome-wide analysis of zinc finger-homeodomain (ZF-HD) transcription factors in diploid and tetraploid cotton	21
Double-stranded RNA mediated knockdown of sucrase gene induced mortality and reduced offspring production in Aphis gossypii	21
Analysis of chloroplast genome characteristics and codon usage bias in 14 species of Annonaceae	21
Multihost compatibility of Fusarium oxysporum: early root colonization effectors into the action!	20
A curated tissue-specific proteome, phosphoproteome, and kinome map of Drosophila melanogaster with an integrated outlook in circadian physiology	20
Integrative single-cell and bulk RNA-seq analysis identifies glycosyltransferases-related signature in triple negative breast cancer	20
Using system biology and bioinformatics to identify the influences of COVID-19 co-infection with influenza virus on COPD	20
A novel artificial intelligence approach to detect the breast cancer using KNNet technique with EPM gene profiling	20
The identification and validation of hub genes associated with advanced IPF by weighted gene co-expression network analysis	20
Time-course RNA sequencing reveals high similarity in mRNAome between hepatic stellate cells activated by agalactosyl IgG and TGF-β1	20
Integrating ex vivo drug sensitivity and genetic mutation analysis improves prediction of chemotherapy response in acute myeloid leukemia	19
ASAPA: a bioinformatic pipeline based on Iso-Seq that identifies the links among alternative splicing, alternative transcription initiation and alternative polyadenylation	19
Comparative Chloroplast Genomics of Sugar Beet and Wild Relatives: Insights into Photosystem Gene Regulation and Stress Tolerance	19
Organ-specific transcriptional and untargeted metabolome analysis demystifies molecular insights and regulation of Gallic acid and flavonoid biosynthesis in Bergenia ciliata	19

FAM72A promotes cervical cancer progression by regulating the PI3K pathway	19
Transcriptome and WGCNA analyses reveal NtRAP2-7 activates NtACOH1 expression to enhance low potassium tolerance in tobacco	19
Retraction Note: Molecular mechanism study and tumor heterogeneity of Chinese angelica and Fructus aurantii in the treatment of colorectal cancer through computational and molecular dynamics	19
Benchmarking of bioinformatics tools for NGS-based microRNA profiling with RT-qPCR method	18
Single-cell analysis identified PDIA3 as regulator of malignant characteristics and macrophage function in human cancers	18
Innovative perspectives on glioblastoma: the emerging role of long non-coding RNAs	18
Comparative transcriptome analysis provides insight into the important pathways and key genes related to the pollen abortion in the thermo-sensitive genic male sterile line 373S in Brassica napus L.	17
LNCAROD promotes the proliferation and migration of gastric cancer: a bioinformatics analysis and experimental validation	17
Host-mediated gene engineering and microbiome-based technology optimization for sustainable agriculture and environment	17
Mapping of quantitative trait loci for the nutritional value of fresh market tomato	17
Shaping Drosophila eggs: unveiling the roles of Arpc1 and cpb in morphogenesis	17
A novel oncogene, leucine-rich repeat protein 1, mediates hypoxia-induced hepatocellular carcinoma progression	17
Transcription factor MAZ activates the transcription of hypomethylated TYMP in ccRCC	17
Integrated analysis of single-cell and bulk RNA sequencing data identifies the characteristics of ferroptosis in lumbar disc herniation	17
ETV7 promotes colorectal cancer progression through upregulation of IFIT3	17
Integrative metabolomic and transcriptomic analysis reveals the genetic basis of terpenoid-mediated aroma diversity in Ocimum species	16
Multi-omics based consensus subtypes, development of prognostic signature, and identification of INHBB as a potential therapeutic target in colorectal cancer	16
MyeloDB: a multi-omics resource for multiple myeloma	16
A novel PADI6 splice-site variant induces non-canonical GC-AG splicing and embryonic arrest in humans	16
Reversal of H2O2-induced cell death by knockdown of HOTAIR in HTR-8/SVneo cells by mediation of miR-106b-5p/ACSL4 axis	16
Deep transcriptome and metabolome analysis to dissect untapped spatial dynamics of specialized metabolism in Saussurea costus (Falc.) Lipsch	16
Tet1-mediated activation of the Ampk signaling by Trpv1 DNA hydroxymethylation exerts neuroprotective effects in a rat model of Parkinson’s disease	15
DIA-based proteomic analysis reveals Scutellaria barbata D. Don Exosome-like nanovesicles promote ferroptosis in HCC through Nrf2/SLC7A11/GPX4 pathway	15
Architecture and topologies of gene regulatory networks associated with breast cancer, adjacent normal, and normal tissues	15
Retraction Note: Integration of clinical and spatial data to explore lipid metabolism-related genes for predicting prognosis and immune microenvironment in gliomas	15
Correction to: De novo transcriptome assembly and global analysis of differential gene expression of aphid tolerant wild mustard Rorippa indica (L.) Hiern infested by mustard aphid Lipaphis Erysimi (L	15
Genome-wide association studies: an intuitive solution for SNP identification and gene mapping in trees	15
Analysis of the regulatory role of miR-34a-5p/PLCD3 in the progression of osteoarthritis	15
Comprehensive multi-omics analysis of nucleotide metabolism: elucidating the role and prognostic significance of UCK2 in bladder cancer	15
RNA-binding protein BICC1 promotes gastric cancer progression via the PRRX1-MAPK signaling axis	15
Epitranscriptomic regulation of diabetic EndMT in HAECs: METTL3-dependent m6A modification promotes endothelial dysfunction	15
Retraction Note: Influence of the kappa casein genotype on the technological properties of cow milk of Simmental and Alatau breeds	15
UDP-glycosyltransferase gene SlUGT73C1 from Solanum lycopersicum regulates salt and drought tolerance in Arabidopsis thaliana L.	14
Genomic and metabolomic characterization of Acinetobacter calcoaceticus (DT1) and Citrobacter braakii (S10) reveal functional traits for plant stress alleviation and sustainable agriculture	14
NGS-based profiling identifies miRNAs and pathways dysregulated in cisplatin-resistant esophageal cancer cells	14
Retraction Note: Special transcriptome landscape and molecular prognostic signature of non-smoking head and neck cancer patients	14
Insights into the functions of MYB29 and MYB28.1 involved in glucosinolate biosynthesis from Isatis indigotica Fort.	14
Downregulation of lncRNA CDKN2B-AS1 attenuates inflammatory response in mice with allergic rhinitis by regulating miR-98-5p/SOCS1 axis	14
The role of disulfidptosis-associated LncRNA-LINC01137 in Osteosarcoma Biology and its regulatory effects on macrophage polarization	14
An integrative analysis of the single-cell transcriptome identifies DUSP4 as an exhaustion-associated gene in tumor-infiltrating CD8+ T cells	14
Immunoinformatic prediction of potential immunodominant epitopes from cagW in order to investigate protection against Helicobacter pylori infection based on experimental consequences	14
A reproducible endothelial-state contrast with limited bulk prognostic robustness in hepatocellular carcinoma	14
Comprehensive analysis of mRNAs in the cerebral cortex in APP/PS1 double-transgenic mice with Alzheimer's disease based on high-throughput sequencing of N4-acetylcytidine	14
Transcriptome analysis reveals no obvious unintended effects in the spleen of CRISPR/Cas9-mediated CD163 and pAPN double-knockout pigs	13
Circular RNA eukaryotic translation initiation factor 6 facilitates TPC-1 cell proliferation and invasion through the microRNA-138-5p/lipase H axis	13
“KRiShI”: a manually curated knowledgebase on rice sheath blight disease	13
Transcription factor BrEFM negatively regulates flowering time in Chinese cabbage	13
FANCD2 genome binding is nonrandom and is enriched at large transcriptionally active neural genes prone to copy number variation	13
Molecular cloning and functional characterization of MhHEC2-like genes in Malus halliana reveals it enhances Fe (iron) deficiency tolerance	13
miR-429 inhibits the formation of an immunosuppressive microenvironment to counteract hepatocellular carcinoma immune escape by targeting PD-L1	13
FOXP3 inhibits inflammatory activation of conjunctival epithelial cells in allergic conjunctivitis via the KAT5/PDCD4 axis	13
Effect of gibberellin on crown root development in the mutant of the rice plasmodesmal Germin-like protein OsGER4	13
Ectopic expression of a grapevine alkaline α-galactosidase seed imbibition protein VvSIP enhanced salinity tolerance in transgenic tobacco plants	13
Cancer gene therapy: historical perspectives, current applications, and future directions	13
LncRNA TUG1 promotes hepatic lipid accumulation by targeting the miR-29a-3p/SREBP-2/HMGCR axis in MAFLD	13
USF1-mediated transcription of PARP1 contributes to sevoflurane-induced pyroptosis in perioperative neurocognitive disorders	13
Novel PKP2 compound heterozygous mutations causing neonatal early-onset arrhythmogenic cardiomyopathy: insights into the synergistic pathogenicity of biallelic inactivation	13
Polycomb repressive complex 2 (PRC2) pathway’s role in cancer cell plasticity and drug resistance	12
Application of quercetin enhances tobacco resistance to Phytophthora nicotianae	12
Leptin drives glucose metabolism to promote cardiac protection via OPA1-mediated HDAC5 translocation and Glut4 transcription	12
LncRNAs orchestration of gastric cancer - particular emphasis on the etiology, diagnosis, and treatment resistance	12
SORL1 stabilizes ABCB1 to promote cisplatin resistance in ovarian cancer	12
Kinesin family member 23 knockdown inhibits cell proliferation and epithelial-mesenchymal transition in esophageal carcinoma by inactivating the Wnt/β-catenin pathway	12
Identification of genes controlling grain size in barley through RNA-seq and weighted gene co-expression network analysis	12
Identification of the Nicotianamine synthase (NAS) gene family in wheat (Triticum aestivum L.) and the role of its member TaNAS4-A in Zn and Fe transport	12
Integrated phylogenomic and transcriptomic analyses reveal GhTZP3 as a key gene regulating flowering time and undergoing artificial selection in upland cotton (Gossypium hirsutum)	12
Genome-wide identification, characterization, and evolutionary analysis of NBS genes and their association with disease resistance in Musa spp.	12
Regulatory mechanism and biological function of UHRF1–DNMT1-mediated DNA methylation	12
Protective effect of bone morphogenetic protein-7 induced differentiation of bone marrow mesenchymal stem cells in rat with acute spinal cord injury	12
Serine related gene CCT6A promotes metastasis of hepatocellular carcinoma via interacting with RPS3	12
Single-cell transcriptome analysis identifies novel biomarkers involved in major liver cancer subtypes	12
Effect of salinity on ccmfn gene RNA editing of mitochondria in wild barley and uncommon types of RNA editing	12
Integrative multi-omics analysis and machine learning identify M2 macrophage–induced ferroptosis resistance in glioblastoma	12
Regulatory axis of circular RNA DTNB, microRNA-485-5p, and myeloid cell leukemia 1 attenuates inflammation and apoptosis in caerulein-treated AR42J cells	11
Association of MUC3A P258S mutation with advanced phase CML structural and in silico insights	11
Integration of clinical and cellular lipidomics identifies a serum metabolite signature predictive of oxaliplatin resistance in colorectal cancer	11
A review of ARGOS-mediated regulation of plant organ size: molecular mechanisms, environmental interactions, and agricultural implications	11
MYC-SEPT11 Axis Promotes osteoblast differentiation and bone formation via PI3K/AKT and RhoA/ROCK signaling pathways	11
Dissecting the genomic landscape of ERD genes in alfalfa (Medicago sativa): the effect of melatonin and low selenium under salt stress	11
RETRACTED ARTICLE: RAD54L promotes progression of hepatocellular carcinoma via the homologous recombination repair pathway	11

Bronchial epithelial-derived exosomal SLC6A14 promotes airway inflammation and mucus hypersecretion via the ZFP36L1/IL-8 axis	11
RETRACTED ARTICLE: Exploring the potential of miR-9a-5p in circadian rhythm and cognitive recovery following brain injury in neonatal rats	11
MicroRNA profiling of royal jelly extracellular vesicles and their potential role in cell viability and reversing cell apoptosis	11
PSMG3 enhances the proliferation and metastasis of hepatocellular carcinoma via inhibiting HDAC6	11
Integrative functional genomics maps synaptic and developmental-regulatory autism risk-gene sets across human cortex	11
MZB1-Driven Endoplasmic reticulum stress model as a predictor of breast cancer progression and survival	11
β-Lapachone sensitizes glioblastoma to Temozolomide by inhibiting NF-κB signaling	11
Gene clusters-based pathway enrichment analysis identifies four pan-cancer subtypes with distinct molecular and clinical features	11
A new efficient referential genome compression technique for FastQ files	11
Honokiol attenuates renal fibrosis via SIRT3-Mediated regulation of Wnt/β-Catenin signaling	11
EGF/ERBB2 blocks the endoplasmic reticulum-associated degradation to facilitate chronic obstructive pulmonary disease development by decreasing FAM8A1 via up-regulating DNMT3A	11
Integrated analysis of single-cell and bulk RNA sequencing identifies a signature based on macrophage marker genes involved in prostate cancer prognosis and treatment responsiveness	11
PFT-α protects the blood-brain barrier through the Wnt/β-catenin pathway after acute ischemic stroke	11
Establishment of a prognostic model for melanoma based on necroptosis-related genes	11
Comprehensive insights and In silico analysis into the emerging role of LincRNAs in lung diseases pathogenesis; a step toward ncRNA precision	11
Autoimmune mechanisms and inflammation in obesity-associated type 2 diabetes, atherosclerosis, and non-alcoholic fatty liver disease	11
Comprehensive pan-cancer analysis reveals SIRT5 is a predictive biomarker for prognosis and immunotherapy response	11
RETRACTED ARTICLE: Vacuolar protein sorting 35 (VPS35) acts as a tumor promoter via facilitating cell cycle progression in pancreatic ductal adenocarcinoma	11
Drought-tolerant wheat for enhancing global food security	10
Transcriptome analysis and differential expression in Arabidopsis thaliana in response to rohitukine (a chromone alkaloid) treatment	10
Identification of lncRNAs regulating seed traits in Brassica juncea and development of a comprehensive seed omics database	10
MHY1485 promotes adriamycin sensitivity in HepG2 cells by inhibiting autophagy	10
Prioritization of candidate genes regulating the dwarfness in rice by integration of whole-genome and transcriptome analyses	10
Flavonoids: a review on biosynthesis and transportation mechanism in plants	10
The mechanism of MMP14-positive tumor-associated fibroblast subsets in inhibiting PD-1 immunotherapy for esophageal cancer through exosomal tsRNA-10522	10
Analysis of the complete mitogenome of Daphnia galeata from the Han River, South Korea: structure comparison and control region evolution	10
Smeat-seq transcriptomic profiling unveils key regulatory events during Maternal-to-Zygotic transition and supports High-Efficiency culture system development in Tibetan sheep embryos	10
NEDD4 facilitates the progression of endometrial carcinoma by enhancing PAMR1 protein degradation through ubiquitination	10
Genome-wide association study for boll weight in Gossypium hirsutum races	10
LINC02086 inhibits ferroptosis and promotes malignant phenotypes of pancreatic cancer via miR-342-3p/CA9 axis	10
Integrative meta-analysis of RNA-Seq data reveals conserved orthologous gene modules and pathways in wheat and rice in response to plant growth-promoting bacteria	10
Can nanotechnology and genomics innovations trigger agricultural revolution and sustainable development?	10
Correction to: Fantastic genes: where and how to find them? Exploiting rice genetic resources for the improvement of yield, tolerance, and resistance to a wide array of stresses in rice	10
GsPKS24, a calcineurin B-like protein-interacting protein kinase gene from Glycine soja, positively regulates tolerance to pH stress and ABA signal transduction	10
Weighted gene co-expression network analysis combined with machine learning validation to identify key hub biomarkers in colorectal cancer	10
Status and advancement of root-knot nematode management strategies and the emerging CRISPR/Cas biotechnology application	10
Potential of underutilized crops to introduce the nutritional diversity and achieve zero hunger	10
Circular RNA circ_0022707 impedes the progression of preeclampsia via the miR-3135b/GHR/PI3K/Akt axis	9
Trihelix gene identification and functional analysis of HvTH1 regulator’s role in ROS detoxification during salt stress conditions in wild barley	9
TRIP 13-dependent pathways promote the development of gastric cancer	9
Synergistic inhibition of the PI3K-AKT-mTOR signaling pathway in idiopathic pulmonary fibrosis by Sanleng-Ezhu: a multi-omics and experimental study	9
Identification and characterization of TMV-induced volatile signals in Nicotiana benthamiana: evidence for JA/ET defense pathway priming in congeneric neighbors via airborne (E)-2-octenal	9
Deciphering the potential molecular network underlying nicotine- and its metabolite cotinine-induced myocardial infarction via network toxicology, molecular dynamics, and in vitro experimental validat	9
Exploring the m5C epitranscriptome of mRNAs in breast cancer cells through genome engineering and long-read sequencing approaches	9
Immune-related biomarkers predict the prognosis and immune response of breast cancer based on bioinformatic analysis and machine learning	9
Comparative transcriptomics unravels new genes imparting scab resistance in apple (Malus x domestica Borkh.)	9
Integrative analysis identifies FERMT3 as a key regulator of metabolic reprogramming in keloid scarring and metabolic syndrome	9
LncRNA FOXP4-AS1 promotes glioma cell proliferation, metastasis, and glycolysis via the miR-136-5p/ADCYAP1R1 axis	9
CRISPR-Cas9-mediated deletion enhancer of MECOM play a tumor suppressor role in ovarian cancer	9
CXCL2 is associated with IL-6/JAK2/STAT3 signaling and the immune microenvironment in lung squamous cell carcinoma	9
SOCS2 regulation myoblast differentiation of Hu sheep via STAT3/PSMB9 pathway	9
The impact of CsPSKs on plant immunity: insights from a genome-wide study of small peptides in Citrus sinensis	9
Characterization of 4-coumarate CoA ligase (4CL) gene family and functional study of Sm4CL2/3/7/9 in Salvia miltiorrhiza	9
Liensinine ameliorates ischemia–reperfusion-induced brain injury by inhibiting autophagy via PI3K/AKT signaling	9
Identification of two variants in PAX3 and FBN1 in a Chinese family with Waardenburg and Marfan syndrome via whole exome sequencing	9
STEAP3 regulates ferroptosis through mitochondrial metabolic dysfunction to impact the malignant proliferation of ovarian cancer cells	9
Multi-omics integration reveals YWHAE as a key mediator of ferroptosis in ARDS	9
Epidemiology, pathogenesis, immune evasion mechanism and vaccine development of porcine Deltacoronavirus	9
A novel mitochondria-related gene signature in esophageal carcinoma: prognostic, immune, and therapeutic features	9
Genetic regulation of major immunogenic protein accumulation in peanut seeds	9
Gene-sized editing for the therapy of genetic diseases	9
SIGMAR1 targets AMPK/ULK1 pathway to inhibit SH-SY5Y cell apoptosis by regulating endoplasmic reticulum stress and autophagy	9
Comparative genomics and integrated system biology approach unveiled undirected phylogeny patterns, mutational hotspots, functional patterns, and molecule repurposing for monkeypox virus	9
Ubiquitination-specific protease 7 enhances stemness of hepatocellular carcinoma by stabilizing basic transcription factor 3	8
LRRC8A/PKC/FLNA pathway activation is detrimental to colon cancer patients	8
The pan-genome of the emerging multidrug-resistant pathogen Corynebacterium striatum	8
Unscheduled excessive R-loops in immune response	8
LncRNAs in hypoxic microenvironment; insight in their impact in cancer biology	8
Identification of the PLATZ gene family in Cucurbita pepo and functional analysis of CpPLATZ4 in powdery mildew stress response	8
Synonymous sites for accessibility around microRNA binding sites in bacterial spot and speck disease resistance genes of tomato	8
Correction to: Genome‑wide association studies: an intuitive solution for SNP identification and gene mapping in trees	8
Identification, characterization, and comprehensive expression profiling of floral master regulators in pigeon pea (Cajanus cajan [L.] Millspaugh)	8
Genome-wide analysis of the SWEET gene family in quinoa and functional study of CqSWEET14 in drought resistance	8
Correction to: Single‑cell analysis identified PDIA3 as regulator of malignant characteristics and macrophage function in human cancers	8
Joint multi-omics analysis reveals the response mechanism in rapeseed (Brassica Rapa L.) under low nitrogen stress	8
Epigenetic gene silencing in plants: Insights from triplet repeat expansion in Arabidopsis	8
Correction to: MicroRNAs regulating Wnt signaling pathway in colorectal cancer: biological implications and clinical potentials	8
A single-cell cell-of-origin audit of the lncRNA RMST: bulk expression under-represents its broad neural expression and over-attributes a liver biomarker	8
Single-cell and spatial transcriptomics identify CAPG as a key driver of cisplatin resistance in bladder cancer	8
CircSHPRH inhibits malignancy progression of head and neck squamous cell carcinoma by regulating PI3K/AKT/mTOR signaling pathway	8
Genome-wide identification of TCP gene family and gene editing of BjTCP18 genes increases branching in Brassica juncea	8
YTHDF1–ALYREF axis enhances mrna stability and tumor immune evasion in paediatric B-cell acute lymphoblastic leukemia	8
Antler-derived microRNA PC-5p-1090 inhibits HCC cell proliferation, migration, and invasion by targeting MARCKS, SMARCAD1, and SOX9	8
Correction to: Flavonoids: a review on biosynthesis and transportation mechanism in plants	8
Dihydrolipoamide dehydrogenase promotes hepatocellular carcinoma progression and modulates cuproptosis-dependent cell death	8
Identification of exosomes-related lncRNAs in clear cell renal cell carcinoma based on Bayesian spike-and-slab lasso approach	8
Candidate genes for anthracnose resistance in Senegalese sorghum: a machine learning-based exploration	8
Deltex E3 ubiquitin ligase 4 promotes thyroid cancer progression through stearoyl-CoA desaturase 1	8
Genome-wide characterization and comparative analysis of Bacillus paranthracis MBBL1 reveals genomic plasticity features	8
Knockout of SSIIa in waxy barley blocks starch biosynthesis and increases soluble sugar and Fructan accumulation	8
Complete chloroplast genome of the Malus baccata var. gracilis provides insights into the evolution and phylogeny of Malus species	8
Comprehensive profiling of Bcl-2-associated athanogene (BAG) genes and their genetic potential role under cold stress in Cotton	8
De novo transcriptome sequencing of drought tolerance–associated genes in little millet (Panicum sumatrense L.)	8
Harnessing natural compounds to modulate miRNAs in breast cancer therapy	8
Integration of metabolite and transcriptome profiles of cultivated and wild rice to unveil gene regulatory networks and key genes determining rice source and sink strength	8