OOIR: Observatory of International Research

Papers

(The median citation count of Journal of Industrial Microbiology & Biotechnology is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Enzymatic processing of lignocellulosic biomass: principles, recent advances and perspectives	102
Towards smart biomanufacturing: a perspective on recent developments in industrial measurement and monitoring technologies for bio-based production processes	62
Mechanisms of action of ribosomally synthesized and posttranslationally modified peptides (RiPPs)	53
Synthetic biology, systems biology, and metabolic engineering of Yarrowia lipolytica toward a sustainable biorefinery platform	47
Towards continuous industrial bioprocessing with solventogenic and acetogenic clostridia: challenges, progress and perspectives	47
Extracellular electron uptake by autotrophic microbes: physiological, ecological, and evolutionary implications	38
Fine-tuning the regulation of Cas9 expression levels for efficient CRISPR-Cas9 mediated recombination in Streptomyces	33
Adaptive laboratory evolution induced novel mutations in Zymomonas mobilis ATCC ZW658: a potential platform for co-utilization of glucose and xylose	30
Cell-free systems for accelerating glycoprotein expression and biomanufacturing	29
Genome mining for drug discovery: progress at the front end	28
Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture	27
Yeast as a promising heterologous host for steroid bioproduction	26
Identification of oleaginous yeasts that metabolize aromatic compounds	26
Enhanced production of β-alanine through co-expressing two different subtypes of l-aspartate-α-decarboxylase	23
Research progress of the biosynthetic strains and pathways of bacterial cellulose	23
Effective use of biosensors for high-throughput library screening for metabolite production	22
Multiplex gene editing and large DNA fragment deletion by the CRISPR/Cpf1-RecE/T system in Corynebacterium glutamicum	20
Metabolic engineering of microorganisms for L-alanine production	19
Potential applications of halophilic microorganisms for biological treatment of industrial process brines contaminated with aromatics	19
Metabolic engineering of Escherichia coli for production of chemicals derived from the shikimate pathway	19
Engineering Saccharomyces cerevisiae for production of the valuable monoterpene d-limonene during Chinese Baijiu fermentation	19
Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes	19
Combined mutagenesis and metabolic regulation to enhance d-arabitol production from Candida parapsilosis	18
The future of self-selecting and stable fermentations	18
Secondary metabolites from the Burkholderia pseudomallei complex: structure, ecology, and evolution	18

Construction of a “nutrition supply–detoxification” coculture consortium for medium-chain-length polyhydroxyalkanoate production with a glucose–xylose mixture	17
WblA, a global regulator of antibiotic biosynthesis in Streptomyces	17
Improvement in d-xylose utilization and isobutanol production in S. cerevisiae by adaptive laboratory evolution and rational engineering	17
Effects of a Δ-9-fatty acid desaturase and a cyclopropane-fatty acid synthase from the novel psychrophile Pseudomonas sp. B14-6 on bacterial membrane properties	17
The infinite possibilities of RNA therapeutics	16
Nonribosomal peptide synthetases and their biotechnological potential in Penicillium rubens	16
Docking domain-mediated subunit interactions in natural product megasynth(et)ases	16
Electroactive biofilms: how microbial electron transfer enables bioelectrochemical applications	16
Microbial adaptive evolution	15
Rational modification of the carbon metabolism of Corynebacterium glutamicum to enhance l-leucine production	15
Fermentation process for producing CFAs using Yarrowia lipolytica	15
Biosynthesis of sulfonamide and sulfamate antibiotics in actinomycete	15
Advances on (+)-nootkatone microbial biosynthesis and its related enzymes	15
Activation modes in biocatalytic radical cyclization reactions	14
Improve the production of d-limonene by regulating the mevalonate pathway of Saccharomyces cerevisiae during alcoholic beverage fermentation	14
Biosynthesis and biological function of secondary metabolites of the rice blast fungus Pyricularia oryzae	14
Efficient synthesis of γ-glutamyl compounds by co-expression of γ-glutamylmethylamide synthetase and polyphosphate kinase in engineered Escherichia coli	14
Reverse β-oxidation pathways for efficient chemical production	14
Production of isopropyl and butyl esters by Clostridium mono-culture and co-culture	14
Recent advances in the biosynthesis of RiPPs from multicore-containing precursor peptides	14
Back to the plant: overcoming roadblocks to the microbial production of pharmaceutically important plant natural products	14
Streptomyces venezuelae NRRL B-65442: genome sequence of a model strain used to study morphological differentiation in filamentous actinobacteria	14
Application of computational fluid dynamics (CFD) on the raceway design for the cultivation of microalgae: a review	14
Genomic-, phenotypic-, and toxicity-based safety assessment and probiotic potency of Bacillus coagulans IDCC 1201 isolated from green malt	14
Investigation of secondary metabolism in the industrial butanol hyper-producer Clostridium saccharoperbutylacetonicum N1-4	14
Assessing the risk of resistance to cationic biocides incorporating realism-based and biophysical approaches	13
Disruption of the Trichoderma reesei gul1 gene stimulates hyphal branching and reduces broth viscosity in cellulase production	13
How to harness biosynthetic gene clusters of lasso peptides	13
Clean manufacturing powered by biology: how Amyris has deployed technology and aims to do it better	13
You get what you screen for: on the value of fermentation characterization in high-throughput strain improvements in industrial settings	13
Microbial valorization of underutilized and nonconventional waste streams	13
Comparison of performances of different fungal laccases in delignification and detoxification of alkali-pretreated corncob for bioethanol production	13
Genome mining for drug discovery: cyclic lipopeptides related to daptomycin	13
Heterologous production of cyanobacterial compounds	12
Biology and biotechnology of microbial pilus nanowires	12
A comparison of culture-based, real-time PCR, droplet digital PCR and flow cytometric methods for the detection of Burkholderia cepacia complex in nuclease-free water and antiseptics	11
Synthetic biology, combinatorial biosynthesis, and chemo‑enzymatic synthesis of isoprenoids	11
Biophysical methods to quantify bacterial behaviors at oil–water interfaces	11
Engineering acetyl-CoA supply and ERG9 repression to enhance mevalonate production in Saccharomyces cerevisiae	11
Recent progress in adaptive laboratory evolution of industrial microorganisms	11
Biosensor-enabled droplet microfluidic system for the rapid screening of 3-dehydroshikimic acid produced in Escherichia coli	11
Enhancing glutaric acid production in Escherichia coli by uptake of malonic acid	10
System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces	10
A multistrategy approach for improving the expression of E. coli phytase in Pichia pastoris	10
Metabolic engineering of Escherichia coli W for isobutanol production on chemically defined medium and cheese whey as alternative raw material	9
Engineering a growth-phase-dependent biosynthetic pathway for carotenoid production in Saccharomyces cerevisiae	9
Novel mannosylerythritol lipid biosurfactant structures from castor oil revealed by advanced structure analysis	9
Synthetic utility of oxygenases in site-selective terpenoid functionalization	9
Engineering robust microorganisms for organic acid production	9
Reduced viscosity mutants of Trichoderma reesei with improved industrial fermentation characteristics	9

New insights and advances on pyomelanin production: from microbial synthesis to applications	9
Ultrahigh-throughput screening of industrial enzyme-producing strains by droplet-based microfluidic system	8
Microbial engineering to produce fatty alcohols and alkanes	8
Enhanced production of clavulanic acid by improving glycerol utilization using reporter-guided mutagenesis of an industrial Streptomyces clavuligerus strain	8
Identification and characterization of a protein Bro1 essential for sophorolipids synthesis inStarmerella bombicola	8
Control of the polymyxin analog ratio by domain swapping in the nonribosomal peptide synthetase of Paenibacillus polymyxa	8
Fatty acid secretion by the white-rot fungus,Trametes versicolor	8
Monoterpenoid biosynthesis by engineered microbes	8
Directed evolution of alditol oxidase for the production of optically pure D-glycerate from glycerol in the engineeredEscherichia coli	8
Production of D-lactic acid containing polyhydroxyalkanoate polymers in yeast Saccharomyces cerevisiae	8
Production of d-Glyceric acid from d-Galacturonate in Escherichia coli	7
Cytochrome P450-mediated N-demethylation of noscapine by whole-cell biotransformation: process limitations and strategies for optimisation	7
PenA, a penicillin-binding protein-type thioesterase specialized for small peptide cyclization	7
Anti-cryptococcal activity of preussolides A and B, phosphoethanolamine-substituted 24-membered macrolides, and leptosin C from coprophilous isolates of Preussia typharum	7
Small molecule natural products in human nasal/oral microbiota	7
Engineering Bacillus subtilis ATCC 6051a for the production of recombinant catalases	7
Insights into cyanobacterial alkane biosynthesis	7
Progress in heterologous biosynthesis of forskolin	7
Fructooligosaccharides production by immobilized Pichia pastoris cells expressing Schedonorus arundinaceus sucrose:sucrose 1-fructosyltransferase	7
Natural promoters and promoter engineering strategies for metabolic regulation inSaccharomyces cerevisiae	7
Artificial cell factory design for shikimate production in Escherichia coli	7
Deciphering the mechanism by which the yeastPhaffia rhodozymaresponds adaptively to environmental, nutritional, and genetic cues	7
Directed evolution of Zymomonas mobilis sugar facilitator Glf to overcome glucose inhibition	6
Impact of overexpressing NADH kinase on glucoamylase production in Aspergillus niger	6
Challenges in the production and use of probiotics as therapeuticals in cancer treatment or prevention	6
Ethanol production by Escherichia coli from detoxified lignocellulosic teak wood hydrolysates with high concentration of phenolic compounds	6
Discovery of ammosesters by mining the Streptomyces uncialis DCA2648 genome revealing new insight into ammosamide biosynthesis	6
Active tyrosine phenol-lyase aggregates induced by terminally attached functional peptides in Escherichia coli	6
Effects of a novel variant of the yeast γ-glutamyl kinase Pro1 on its enzymatic activity and sake brewing	6
Cytochromes P450 involved in bacterial RiPP biosyntheses	6
The effect of CO2 concentration on yeast fermentation: rates, metabolic products, and yeast stress indicators	6
Streptomyces clavuligerus: The Omics Era	6
Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani	6
Engineering of a thermo-alkali-stable lipase from Rhizopus chinensis by rational design of a buried disulfide bond and combinatorial mutagenesis	6
Characterizing Escherichia coli’s transcriptional response to different styrene exposure modes reveals novel toxicity and tolerance insights	6
Expanding the genetic engineering toolbox for the metabolically flexible acetogen Eubacterium limosum	5
Upstream development of Escherichia coli fermentation process with PhoA promoter using design of experiments (DoE)	5
Effective approaches to discover new microbial metabolites in a large strain library	5
Characterization ofStreptomycessp. LS462 with high productivity of echinomycin, a potent antituberculosis and synergistic antifungal antibiotic	5
Rewiring the microbial metabolic network for efficient utilization of mixed carbon sources	5
Optimization of n-butanol synthesis in Lactobacillus brevis via the functional expression of thl, hbd, crt and ter	5
A muramidase from Acremonium alcalophilum hydrolyse peptidoglycan found in the gastrointestinal tract of broiler chickens	5
Inorganic phosphate self-sufficient whole-cell biocatalysts containing two co-expressed phosphorylases facilitate cellobiose production	5
Engineering Thermotoga maritima β-glucosidase for improved alkyl glycosides synthesis by site-directed mutagenesis	5
Structure and biosynthesis of deoxy-polyamine in Xenorhabdus bovienii	5
Engineering the cellulolytic extreme thermophile Caldicellulosiruptor bescii to reduce carboxylic acids to alcohols using plant biomass as the energy source	5
Whole-cell display of Pyrococcus horikoshii glutamate decarboxylase in Escherichia coli for high-titer extracellular gamma-aminobutyric acid production	4
Data-based dynamic compartment model: Modeling ofE. colifed-batch fermentation in a 600 m3 bubble column	4
Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose	4
Sugar transport for enhanced xylose utilization in Ashbya gossypii	4
Simultaneous identification to monitor consortia strain dynamics of four biofuel yeast species during fermentation	4
Enhanced β-carotene production inYarrowia lipolyticathrough the metabolic and fermentation engineering	4
Proteins identified through predictive metagenomics as potential biomarkers for the detection of microbiologically influenced corrosion	4
Microbial pigments: Learning from Himalayan perspective to industrial applications	4
Engineering sequence and selectivity of late-stage C-H oxidation in the MycG iterative cytochrome P450	4
Structure and biosynthesis of sorangipyranone — a new γ-dihydropyrone from the myxobacterial strain MSr12020	4
Effect of dissolved oxygen on l-methionine production from glycerol by Escherichia coli W3110BL using metabolic flux analysis method	4
Traminines A and B, produced by Fusarium concentricum, inhibit oxidative phosphorylation in Saccharomyces cerevisiae mitochondria	4
Enhanced esterase activity during the degradation of dibutyl phthalate by Fusarium species in liquid fermentation	4
Exploitation of ammonia-inducible promoters for enzyme overexpression in Bacillus licheniformis	4