Medical Image Analysis

Article	Citations
Corrigendum to “Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge” [Medical Image Analysis, April 2022, Volume 77, 102333]	896
Unsupervised feature disentanglement for video retrieval in minimally invasive surgery	810
Erratum to ’ Anomaly Segmentation in Retinal Images with Possion-Blending Data Augmentation’ [Medical Image Analysis 81 (2022) 102534]	807
Editorial Board	722
Anatomy-inspired model for critical landmark localization in 3D spinal ultrasound volume data	567
Low-field magnetic resonance image enhancement via stochastic image quality transfer	551
Self-supervised learning of neighborhood embedding for longitudinal MRI	540
MetaExplainer: Revisit domain generalization of functional connectome analyses from the perspective of explainability	505
CAD-Unet: A capsule network-enhanced Unet architecture for accurate segmentation of COVID-19 lung infections from CT images	492
Editorial Board	461
Attentive continuous generative self-training for unsupervised domain adaptive medical image translation	403
HYDI-DSI revisited: Constrained non-parametric EAP imaging without q-space re-gridding	338
Editorial Board	319
MIST: Multi-instance selective transformer for histopathological subtype prediction	311
NuHTC: A hybrid task cascade for nuclei instance segmentation and classification	272
StaSiS-Net: A stacked and siamese disparity estimation network for depth reconstruction in modern 3D laparoscopy	250
Cross-covariance isolate detect: A new change-point method for estimating dynamic functional connectivity	238
TransDose: Transformer-based radiotherapy dose prediction from CT images guided by super-pixel-level GCN classification	206
3D multi-modality Transformer-GAN for high-quality PET reconstruction	200
Multi-site clustering and nested feature extraction for identifying autism spectrum disorder with resting-state fMRI	197
Predicting infant brain connectivity with federated multi-trajectory GNNs using scarce data	189
A graph-theoretic approach for the analysis of lesion changes and lesions detection review in longitudinal oncological imaging	188
Mapping heterogenous anisotropic tissue mechanical properties with transverse isotropic nonlinear inversion MR elastography	186
Latent Transformer Models for out-of-distribution detection	178
Cycle-constrained adversarial denoising convolutional network for PET image denoising: Multi-dimensional validation on large datasets with reader study and real low-dose data	178

Multi-cell type and multi-level graph aggregation network for cancer grading in pathology images	174
TestFit: A plug-and-play one-pass test time method for medical image segmentation	173
Parallel non-Cartesian spatial-temporal dictionary learning neural networks (stDLNN) for accelerating 4D-MRI	171
Robust deep learning-based semantic organ segmentation in hyperspectral images	171
Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes	164
MMGPL: Multimodal Medical Data Analysis with Graph Prompt Learning	160
Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge	160
Sketch guided and progressive growing GAN for realistic and editable ultrasound image synthesis	142
MS-CLAM: Mixed supervision for the classification and localization of tumors in Whole Slide Images	141
Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse	140
Editorial Board	139
Deep radial basis function networks with subcategorization for mitosis detection in breast histopathology images	136
MVNMF: Multiview nonnegative matrix factorization for radio-multigenomic analysis in breast cancer prognosis	135
A multimodal deep learning model for cardiac resynchronisation therapy response prediction	134
Dynamic feature splicing for few-shot rare disease diagnosis	133
SAFRON: Stitching Across the Frontier Network for Generating Colorectal Cancer Histology Images	129
Prototypical multiple instance learning for predicting lymph node metastasis of breast cancer from whole-slide pathological images	127
ZygoPlanner: A three-stage graphics-based framework for optimal preoperative planning of zygomatic implant placement	127
Learning what and where to segment: A new perspective on medical image few-shot segmentation	123
Vessel-promoted OCT to OCTA image translation by heuristic contextual constraints	120
Automatic registration with continuous pose updates for marker-less surgical navigation in spine surgery	117
Interpretable medical image Visual Question Answering via multi-modal relationship graph learning	117
Automatic brain MRI motion artifact detection based on end-to-end deep learning is similarly effective as traditional machine learning trained on image quality metrics	116
A causality-inspired generalized model for automated pancreatic cancer diagnosis	115
Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study	114
RecON: Online learning for sensorless freehand 3D ultrasound reconstruction	114
AutoFOX: An automated cross-modal 3D fusion framework of coronary X-ray angiography and OCT	112
What matters in reinforcement learning for tractography	111
Enhancing chest X-ray datasets with privacy-preserving large language models and multi-type annotations: A data-driven approach for improved classification	110
Generalized pancreatic cancer diagnosis via multiple instance learning and anatomically-guided shape normalization	109
Corrigendum to “LESS: Label-efficient multi-scale learning for cytological whole slide image screening” [Medical Image Analysis 94 (2024): 103109]	108
Erratum to ‘Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology’ Medical Image Analysis, Volume 79, July 2022, 102474	108
Recovering intrinsic conduction velocity and action potential duration from electroanatomic mapping data using curvature	107
Unsupervised domain adaptation for clinician pose estimation and instance segmentation in the operating room	107
An efficient semi-supervised quality control system trained using physics-based MRI-artefact generators and adversarial training	107
A transfer learning approach to few-shot segmentation of novel white matter tracts	105
GAGM: Geometry-aware graph matching framework for weakly supervised gyral hinge correspondence	105
DermX: An end-to-end framework for explainable automated dermatological diagnosis	101
Non-equivalent images and pixels: Confidence-aware resampling with meta-learning mixup for polyp segmentation	100
On the challenges and perspectives of foundation models for medical image analysis	98
FUN-SIS: A Fully UNsupervised approach for Surgical Instrument Segmentation	97
Surface deformation tracking in monocular laparoscopic video	96
Synthesis-based imaging-differentiation representation learning for multi-sequence 3D/4D MRI	93
MallesNet: A multi-object assistance based network for brachial plexus segmentation in ultrasound images	92
Spatiotemporal knowledge teacher–student reinforcement learning to detect liver tumors without contrast agents	91
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue	89
A robust image segmentation and synthesis pipeline for histopathology	89
Robust image representations with counterfactual contrastive learning	87
Generating realistic single-cell images from CellProfiler representations	86
CP-Net: Instance-aware part segmentation network for biological cell parsing	86

Trimming-then-augmentation: Towards robust depth and odometry estimation for endoscopic images	82
Fair evaluation of federated learning algorithms for automated breast density classification: The results of the 2022 ACR-NCI-NVIDIA federated learning challenge	82
Predicting brain structural network using functional connectivity	81
From sMRI to task-fMRI: A unified geometric deep learning framework for cross-modal brain anatomo-functional mapping	81
SurgRIPE challenge: Benchmark of surgical robot instrument pose estimation	80
Strain estimation in aortic roots from 4D echocardiographic images using medial modeling and deformable registration	78
Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acqu	78
Learning multi-modal representations by watching hundreds of surgical video lectures	77
Shape constrained CNN for segmentation guided prediction of myocardial shape and pose parameters in cardiac MRI	76
Semi-automatic segmentation of skin lesions based on superpixels and hybrid texture information	75
Re-identification from histopathology images	75
Use of superpixels for improvement of inter-rater and intra-rater reliability during annotation of medical images	75
Multi-dynamic modelling reveals strongly time-varying resting fMRI correlations	72
A new time-decay radiomics integrated network (TRINet) for breast cancer risk prediction	72
Domain-specific information preservation for Alzheimer’s disease diagnosis with incomplete multi-modality neuroimages	72
Learning pyramidal multi-scale harmonic wavelets for identifying the neuropathology propagation patterns of Alzheimer’s disease	72
Trustworthy learning with (un)sure annotation for lung nodule diagnosis with CT	72
Individualized mapping of aberrant cortical thickness via stochastic cortical self-reconstruction	70
TS-AI: A deep learning pipeline for multimodal subject-specific parcellation with task contrasts synthesis	69
Learning robust medical image segmentation from multi-source annotations	68
WarpDrive: Improving spatial normalization using manual refinements	67
Artifact- and content-specific quality assessment for MRI with image rulers	65
Measurement of biomechanical properties of transversely isotropic biological tissue using traveling wave expansion	64
CyCMIS: Cycle-consistent Cross-domain Medical Image Segmentation via diverse image augmentation	63
EfficientQ: An efficient and accurate post-training neural network quantization method for medical image segmentation	63
Unsupervised 4D-flow MRI reconstruction based on partially-independent generative modeling and complex-difference sparsity constraint	63
Dual-modality visual feature flow for medical report generation	62
Knowledge-driven multi-graph convolutional network for brain network analysis and potential biomarker discovery	62
Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey	62
One model to unite them all: Personalized federated learning of multi-contrast MRI synthesis	62
Mutual learning with reliable pseudo label for semi-supervised medical image segmentation	62
Learning-based needle tip tracking in 2D ultrasound by fusing visual tracking and motion prediction	62
Tumor radiogenomics in gliomas with Bayesian layered variable selection	61
Learning joint surface reconstruction and segmentation, from brain images to cortical surface parcellation	61
ScanAhead: Simplifying standard plane acquisition of fetal head ultrasound	61
Uncertainty-guided graph attention network for parapneumonic effusion diagnosis	61
Multi-label, multi-domain learning identifies compounding effects of HIV and cognitive impairment	60
Uncertainty-aware multiple-instance learning for reliable classification: Application to optical coherence tomography	59
Topology-oriented foreground focusing network for semi-supervised coronary artery segmentation	58
Which images to label for few-shot medical image analysis?	57
Personalized predictions of Glioblastoma infiltration: Mathematical models, Physics-Informed Neural Networks and multimodal scans	57
Efficient anatomical labeling of pulmonary tree structures via deep point-graph representation-based implicit fields	57
Texture-preserving diffusion model for CBCT-to-CT synthesis	57
GAN-based disentanglement learning for chest X-ray rib suppression	56
Assessing clinical progression from subjective cognitive decline to mild cognitive impairment with incomplete multi-modal neuroimages	56
Cycle-conditional diffusion model for noise correction of diffusion-weighted images using unpaired data	56
Diffusion tensor transformation for personalizing target volumes in radiation therapy	56
Hashimoto’s thyroiditis recognition from multi-modal data via global cross-attention and distance-aware training	55
Effective pseudo-labeling based on heatmap for unsupervised domain adaptation in cell detection	55
Domain knowledge based comprehensive segmentation of Type-A aortic dissection with clinically-oriented evaluation	55
Establishing group-level brain structural connectivity incorporating anatomical knowledge under latent space modeling	54
Gumbel-Softmax based Neural Architecture Search for Hierarchical Brain Networks Decomposition	54
Focused active learning for histopathological image classification	53
Rapid inference of personalised left-ventricular meshes by deformation-based differentiable mesh voxelization	53
World of Forms: Deformable geometric templates for one-shot surface meshing in coronary CT angiography	53
Bridging the gap between constrained spherical deconvolution and diffusional variance decomposition via tensor‐valued diffusion MRI	53
MISPEL: A supervised deep learning harmonization method for multi-scanner neuroimaging data	53
Mapping medical image-text to a joint space via masked modeling	52
HAL-IA: A Hybrid Active Learning framework using Interactive Annotation for medical image segmentation	52
Neighbor-aware calibration of segmentation networks with penalty-based constraints	52
Autoencoding low-resolution MRI for semantically smooth interpolation of anisotropic MRI	52
Social network analysis of cell networks improves deep learning for prediction of molecular pathways and key mutations in colorectal cancer	51
Neural orientation distribution fields for estimation and uncertainty quantification in diffusion MRI	51
Interpretable deep clustering survival machines for Alzheimer’s disease subtype discovery	51
TW-GAN: Topology and width aware GAN for retinal artery/vein classification	51
Unpaired, unsupervised domain adaptation assumes your domains are already similar	50
Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia	50
Personalized dental crown design: A point-to-mesh completion network	50
Multi-Class ASD Classification via Label Distribution Learning with Class-Shared and Class-Specific Decomposition	49
Cascaded Multi-path Shortcut Diffusion Model for Medical Image Translation	49
Vessel-targeted compensation of deformable motion in interventional cone-beam CT	49
Real-time placental vessel segmentation in fetoscopic laser surgery for Twin-to-Twin Transfusion Syndrome	49
UDV-Net: A Hybrid CNN and Transformer Vein Segmentation Network with Vascular Prior and Spatial Awareness	49
Deep learning with explainability for characterizing age-related intrinsic differences in dynamic brain functional connectivity	49
NHSMM-MAR-sdNC: A novel data-driven computational framework for state-dependent effective connectivity analysis	49
Unsupervised pre-training of graph transformers on patient population graphs	48
Comparative survey of multigraph integration methods for holistic brain connectivity mapping	48
Semi-automatic data annotation based on feature-space projection and local quality metrics: An application to cerebral emboli characterization	48
Editorial for the MEDIA MICCAI special issue 2021	48
Prediction of the upright articulated spine shape in the operating room using conditioned neural kernel fields	47

Sensorless volumetric reconstruction of fetal brain freehand ultrasound scans with deep implicit representation	46
Preoperative fracture reduction planning for image-guided pelvic trauma surgery: A comprehensive pipeline with learning	46
Sketch-based semantic retrieval of medical images	46
Monocular pose estimation of articulated open surgery tools - in the wild	46
Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for different atlases when raw data is not available	45
Deep semi-supervised multiple instance learning with self-correction for DME classification from OCT images	45
Metadata-enhanced contrastive learning from retinal optical coherence tomography images	45
LACOSTE: Exploiting stereo and temporal contexts for surgical instrument segmentation	45
An objective comparison of methods for augmented reality in laparoscopic liver resection by preoperative-to-intraoperative image fusion from the MICCAI2022 challenge	45
Diagnosis of obsessive-compulsive disorder via spatial similarity-aware learning and fused deep polynomial network	45
uFLIM — Unsupervised analysis of FLIM-FRET microscopy data	45
Contour proposal networks for biomedical instance segmentation	44
Mutual consistency learning for semi-supervised medical image segmentation	44
NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images	44
From modern CNNs to vision transformers: Assessing the performance, robustness, and classification strategies of deep learning models in histopathology	43
Boundary-rendering network for breast lesion segmentation in ultrasound images	43
3DSAM-adapter: Holistic adaptation of SAM from 2D to 3D for promptable tumor segmentation	43
DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in colorectal and breast cancer	43
PerfU-Net: Baseline infarct estimation from CT perfusion source data for acute ischemic stroke	43
Self-supervised pseudo multi-class pre-training for unsupervised anomaly detection and segmentation in medical images	43
A generic fundus image enhancement network boosted by frequency self-supervised representation learning	43
SSA-Net: Spatial self-attention network for COVID-19 pneumonia infection segmentation with semi-supervised few-shot learning	43
Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative	43
The state-of-the-art in cardiac MRI reconstruction: Results of the CMRxRecon challenge in MICCAI 2023	43
Unlocking the diagnostic potential of electrocardiograms through information transfer from cardiac magnetic resonance imaging	42
Multi-target landmark detection with incomplete images via reinforcement learning and shape prior embedding	42
MambaMIM: Pre-training Mamba with state space token interpolation and its application to medical image segmentation	42
Shadow defense against gradient inversion attack in federated learning	42
A survey on cell nuclei instance segmentation and classification: Leveraging context and attention	42
DGMSNet: Spine segmentation for MR image by a detection-guided mixed-supervised segmentation network	42
SurgiNet: Pyramid Attention Aggregation and Class-wise Self-Distillation for Surgical Instrument Segmentation	41
Medical Image Analysis – Special Issue FIMH 2023	41
HGTL: A hypergraph transfer learning framework for survival prediction of ccRCC	41
Case-based similar image retrieval for weakly annotated large histopathological images of malignant lymphoma using deep metric learning	41
AgGAN: Anatomy-guided generative adversarial network to synthesize arterial spin labeling images for cerebral blood flow measurement under simulated microgravity	41
Corrigendum to ‘Quantitative Characterization of the Human Retinotopic Map Based on Quasiconformal Mapping’ [Medical Image Analysis Volume 75 (2022) 102230]	41
	40
Multi-source multi-modal markers for Bayesian Networks: Application to the extremely preterm born brain	40
Deep learning, data ramping, and uncertainty estimation for detecting artifacts in large, imbalanced databases of MRI images	40
Attend-and-Refine: Interactive keypoint estimation and quantitative cervical vertebrae analysis for bone age assessment	40
Fine-scale striatal parcellation using diffusion MRI tractography and graph neural networks	40
Adversarial multimodal fusion with attention mechanism for skin lesion classification using clinical and dermoscopic images	40
Melanoma classification using light-Fields with morlet scattering transform and CNN: Surface depth as a valuable tool to increase detection rate	40
FairREAD: Re-fusing demographic attributes after disentanglement for fair medical image classification	40
C-DARL: Contrastive diffusion adversarial representation learning for label-free blood vessel segmentation	40
Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation	40
Federated learning for computational pathology on gigapixel whole slide images	39
Deep learning for computational cytology: A survey	39
Multi-modal sequence learning for Alzheimer’s disease progression prediction with incomplete variable-length longitudinal data	39
AdvMIL: Adversarial multiple instance learning for the survival analysis on whole-slide images	39
Multi-modal contrastive mutual learning and pseudo-label re-learning for semi-supervised medical image segmentation	39
DVAP-Reg: Dual-View Anatomical Prior-Driven Cross-Dimensional Registration for Spinal Surgery Navigation	39
Bridging multi-level gaps: Bidirectional reciprocal cycle framework for text-guided label-efficient segmentation in echocardiography	39
Interpretable vertebral fracture quantification via anchor-free landmarks localization	39
Deep graph embedding based on Laplacian eigenmaps for MR fingerprinting reconstruction	38
SimIntestine: A synthetic dataset from virtual capsule endoscope	38
Cross-center Model Adaptive Tooth segmentation	38
A novel image-guided robotic system with motion compensation for intraoperative radiation-free localization of pulmonary nodules	38
Controllable illumination invariant GAN for diverse temporally-consistent surgical video synthesis	38
QACL: Quartet attention aware closed-loop learning for abdominal MR-to-CT synthesis via simultaneous registration	37
Object recognition in medical images via anatomy-guided deep learning	37
Editorial Board	37
Towards reliable cardiac image segmentation: Assessing image-level and pixel-level segmentation quality via self-reflective references	37
Contrastive domain adaptation with consistency match for automated pneumonia diagnosis	37
Tubular structures segmentation of pediatric abdominal-visceral ceCT images with renal tumors: Assessment, comparison and improvement	37
Deformation equivariant cross-modality image synthesis with paired non-aligned training data	37
Automatic uncertainty-based quality controlled T1 mapping and ECV analysis from native and post-contrast cardiac T1 mapping images using Bayesian vision transformer	37
Generalizable multi-task, multi-domain deep segmentation of sparse pediatric imaging datasets via multi-scale contrastive regularization and multi-joint anatomical priors	36
Keyhole-aware laparoscopic augmented reality	36
Report is a mixture of topics: Topic-guided radiology report generation	36
Bilateral adaptive graph convolutional network on CT based Covid-19 diagnosis with uncertainty-aware consensus-assisted multiple instance learning	36
NeXtQSM—A complete deep learning pipeline for data-consistent Quantitative Susceptibility Mapping trained with hybrid data	36
Deep generation of personalized connectomes based on individual attributes	35
Category-specific unlabeled data risk minimization for ultrasound semi-supervised segmentation	35
A topology-preserving three-stage framework for fully-connected coronary artery extraction	35
Deep learning based coronary vessels segmentation in X-ray angiography using temporal information	35
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling	35
Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat)	34
Learned iterative segmentation of highly variable anatomy from limited data: Applications to whole heart segmentation for congenital heart disease	34
Corrigendum to “PSFHS challenge report: pubic symphysis and fetal head segmentation from intrapartum ultrasound images” [Medical Image Analysis 99 (2025),103353]	34
Multilevel structure-preserved GAN for domain adaptation in intravascular ultrasound analysis	34
Generating 3D TOF-MRA volumes and segmentation labels using generative adversarial networks	34
Liver lesion changes analysis in longitudinal CECT scans by simultaneous deep learning voxel classification with SimU-Net	34
BayeSeg: Bayesian modeling for medical image segmentation with interpretable generalizability	34
Tracking and mapping in medical computer vision: A review	33
Deblurring masked image modeling for ultrasound image analysis	33
Confidence-aware multi-modality learning for eye disease screening	33
Equitable modelling of brain imaging by counterfactual augmentation with morphologically constrained 3D deep generative models	33
High resolution histopathology image generation and segmentation through adversarial training	33
EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data	33
CholecTriplet2021: A benchmark challenge for surgical action triplet recognition	32
One-shot segmentation of novel white matter tracts via extensive data augmentation and adaptive knowledge transfer	32
Semi-supervised medical image segmentation via weak-to-strong perturbation consistency and edge-aware contrastive representation	32
Developing a knowledge-guided federated graph attention learning network with a diffusion module to diagnose Alzheimer’s disease	32
Neural deformation fields for template-based reconstruction of cortical surfaces from MRI	32