OOIR: Observatory of International Research

Papers

(The TQCC of Genes to Cells is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-10-01 to 2024-10-01.)

Article	Citations
An ALS‐associated KIF5A mutant forms oligomers and aggregates and induces neuronal toxicity	29
The role of eutherian‐specific RTL1 in the nervous system and its implications for the Kagami‐Ogata and Temple syndromes	26
Chromatin remodeling in replication‐uncoupled maintenance DNA methylation and chromosome stability: Insights from ICF syndrome studies	20
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	18
XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	16
VCP relocalization limits mitochondrial activity, GSH depletion and ferroptosis during starvation in PC3 prostate cancer cells	15
Overexpression of neural miRNAs miR‐9/9* and miR‐124 suppresses differentiation to Müller glia and promotes differentiation to neurons in mouse retina in vivo	13
Meflin defines mesenchymal stem cells and/or their early progenitors with multilineage differentiation capacity	13
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	12
MiR‐382‐5p suppresses M1 macrophage polarization and inflammatory response in response to bronchopulmonary dysplasia through targeting CDK8: Involving inhibition of STAT1 pathway	12
miR‐29c‐3p regulates TET2 expression and inhibits autophagy process in Parkinson's disease models	12
Sulfur depletion induces autophagy through Ecl1 family genes in fission yeast	12
RNA polymerase II condensate formation and association with Cajal and histone locus bodies in living human cells	12
Chromosome counting in the mouse zygote using low‐invasive super‐resolution live‐cell imaging	12
Identification and characterization of the antigen recognized by the germ cell mAb TRA98 using a human comprehensive wet protein array	11
Sonic hedgehog signals hinder the transcriptional network necessary for pancreatic endoderm formation from human embryonic stem cells	11
Human SIRT2 and SIRT3 deacetylases function in DNA homologous recombinational repair	10
Amyotrophic lateral sclerosis‐associated Vap33 is required for maintaining neuronal dendrite morphology and organelle distribution in Drosophila	10
Extension of chronological lifespan in Schizosaccharomyces pombe	10
G‐quadruplex‐forming nucleic acids interact with splicing factor 3B subunit 2 and suppress innate immune gene expression	10
The structure of POMGNT2 provides new insights into the mechanism to determine the functional O‐mannosylation site on α‐dystroglycan	10
Single‐shot quantitative phase imaging as an extension of differential interference contrast microscopy	10
(Pro)renin receptor/ATP6AP2 is required for autophagy and regulates proliferation in lung adenocarcinoma cells	10
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	10
Sonic hedgehog expands neural stem cells in the neocortical region leading to an expanded and wrinkled neocortical surface	9

Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	9
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	9
polished rice mediates ecdysone‐dependent control of Drosophila embryonic organogenesis	9
Deltex positively regulates Toll signaling in a JNK independent manner in Drosophila	9
Mulberry fruit extract alleviates the intracellular amyloid‐β oligomer‐induced cognitive disturbance and oxidative stress in Alzheimer’s disease model mice	8
Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality	8
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	8
Protease inhibitory activity of secretory leukocyte protease inhibitor ameliorates murine experimental colitis by protecting the intestinal epithelial barrier	8
SET‐NUP214 and MLL cooperatively regulate the promoter activity of the HoxA10 gene	7
Transcriptome analysis of gene expression changes upon enzymatic dissociation in skeletal myoblasts	7
Characterization of phalloidin‐negative nuclear actin filaments in U2OS cells expressing cytoplasmic actin‐EGFP	7
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	7
Down‐regulation of dual‐specificity phosphatase 6, a negative regulator of oncogenic ERK signaling, by ACA‐28 induces apoptosis in NIH/3T3 cells overexpressing HER2/ErbB2	7
Polyvinyl alcohol scaffolds and supplementation support 3D and sphere culturing of human cancer cell lines by reducing apoptosis and promoting cellular proliferation	7
14–3‐3γ prevents centrosome duplication by inhibiting NPM1 function	7
Expression of Cds4/5 of Arabidopsis chloroplasts in E. coli reveals the membrane topology of the C‐terminal region of CDP‐diacylglycerol synthases	7
Ubiquitination‐dependent and ‐independent repression of target genes by SETDB1 reveal a context‐dependent role for its methyltransferase activity during adipogenesis	7
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	6
Production of therapeutic iduronate‐2‐sulfatase enzyme with a novel single‐stranded RNA virus vector	6
UV‐induced DNA damage disrupts the coordination between replication initiation, elongation and completion	6
Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity	6
Potential involvement of DSCAML1 mutations in neurodevelopmental disorders	6
Identification ofksg1mutation showing long‐lived phenotype in fission yeast	6
The intrinsically disordered N‐terminal region of mouse DNA polymerase alpha mediates its interaction with POT1a/b at telomeres	6
Development of novel potent ligands for GPR85, an orphan G protein‐coupled receptor expressed in the brain	6
Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	6
Periodic albinism of a widely used albino mutant of Xenopus laevis caused by deletion of two exons in the Hermansky–Pudlak syndrome type 4 gene	5
Planar cell polarity protein Vangl2 and its interacting protein Ap2m1 regulate dendritic branching in cortical neurons	5
Identification of CD56^dim subpopulation marked with high expression of GZMB/PRF1/PI‐9 in CD56⁺ interferon‐α‐induced dendritic cells	5
GM‐CSF‐producing CCR2⁺CCR6⁺ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	5
Researchers support preprints and open access publishing, but with reservations: A questionnaire survey of MBSJ members	5
Cytoplasmic granule formation by FUS‐R495X is attributable to arginine methylation in all Gly‐rich, RGG1 and RGG2 domains	5
Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus	5
Vrk2 deficiency elicits aggressive behavior in female zebrafish	5
ISG20 and nuclear exosome promote destabilization of nascent transcripts for spliceosomal U snRNAs and U1 variants	5
Dynein intermediate chains DYCI‐1 and WDR‐60 have specific functions in Caenorhabditis elegans	5
Evaluation of repair activity by quantification of ribonucleotides in the genome	5
Quick and affordable DNA cloning by reconstitution of Seamless Ligation Cloning Extract using defined factors	5
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	5
Pbp1 mediates the aberrant expression of genes involved in growth defect of ccr4∆ and pop2∆ mutants in yeast Saccharomyces cerevisiae	5
TET3 dioxygenase modulates gene conversion at the avian immunoglobulin variable region via demethylation of non‐CpG sites in pseudogene templates	4
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	4
Squamous cell carcinoma‐derived G‐CSF promotes tumor growth and metastasis in mice through neutrophil recruitment and tumor cell proliferation, associated with poor prognosis of the patient	4
Effect of volatile fatty acids on adipocyte differentiation in bovine dedifferentiated fat (DFAT) cells in vitro	4
Horizontal transfer of domains in ssrA gene among Enterobacteriaceae	4
Nondomain biopolymers: Flexible molecular strategies to acquire biological functions	4
Post‐translational modifications of proteins associated with yeast peroxisome membrane: An essential mode of regulatory mechanism	4
ETS‐dependent enhancers for endothelial‐specific expression of serum/glucocorticoid‐regulated kinase 1 during mouse embryo development	4
The anti‐inflammatory effect of metformin: The molecular targets	4
The TIGD5 gene located in 8q24 and frequently amplified in ovarian cancers is a tumor suppressor	4

Drosophila telomere capping protein HOAP interacts with DSB sensor proteins Mre11 and Nbs	4
BAP1 depletion in human B‐lymphoblast cells affects the production of innate immune cytokines and chemokines	4
The SUN1 splicing variants SUN1_888 and SUN1_916 differentially regulate nucleolar structure	4
Trimethylguanosine synthase 1 (Tgs1) is involved in Swi6/HP1‐independent siRNA production and establishment of heterochromatin in fission yeast	4
Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process	4
Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	4
LincRNA‐p21 exon 1 expression correlates with Cdkn1a expression in vivo	4
SH3P2 suppresses osteoclast differentiation through restricting membrane localization of myosin 1E	4
TAZ inhibits acinar cell differentiation but promotes immature ductal cell proliferation in adult mouse salivary glands	4
Comprehensive lipidomics of lupus‐prone mice using LC–MS/MS identifies the reduction of palmitoylethanolamide that suppresses TLR9‐mediated inflammation	4
Enhancement of leukemia‐like phenotypes in Drosophila mxc mutant larvae due to activation of the RAS‐MAP kinase cascade possibly via down‐regulation of DE‐cadherin	4
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	4
Single‐cell dissection reveals the role of DNA damage response patterns in tumor microenvironment components contributing to colorectal cancer progression and immunotherapy	3
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	3
Behavioral screening of sleep‐promoting effects of human intestinal and food‐associated bacteria on Drosophila melanogaster	3
CREG1 improves diet‐induced obesity via uncoupling protein 1‐dependent manner in mice	3
Red light‐regulated interaction of Per‐Arnt‐Sim histidine kinases with partner histidine‐containing phosphotransfer proteins in Physcomitrium patens	3
Di‐lysine motif‐like sequences formed by deleting the C‐terminal domain of aquaporin‐4 prevent its trafficking to the plasma membrane	3
Intranasal Sendai virus‐based SARS‐CoV‐2 vaccine using a mouse model	3
Amphibian thrombocyte‐derived extracellular vesicles, including microRNAs, induce angiogenesis‐related genes in endothelial cells	3
N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	3
A DNA repair player, ring finger protein 43, relieves etoposide‐induced topoisomerase II poisoning	3
Ubiquitin proteasome system in circadian rhythm and sleep homeostasis: Lessons from Drosophila	3
The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans	3
UV‐induced activation of ATR is mediated by UHRF2	3
Systemic innate immune response induces death of olfactory receptor neurons in Drosophila	3
Sima, a Drosophila homolog of HIF‐1α, in fat body tissue inhibits larval body growth by inducing Tribbles gene expression	3
GATA2 participates in the recanalization of lymphatic vessels after surgical lymph node extirpation	3
The ribonuclease domain function is dispensable for SLFN11 to mediate cell fate decision during replication stress response	3
Inhibition of lipopolysaccharide‐induced inflammatory responses by 1′‐acetoxychavicol acetate	3
Mitochondrial dynamics and degradation in the oleaginous yeast Lipomyces starkeyi	3
The impact of SETBP1 mutations in neurological diseases and cancer	3
Marsupial genome analysis suggests that satellite DNA formation from walb endogenous retrovirus is an event specific to the red‐necked wallaby	3
Yeast Tor complex 1 phosphorylates eIF4E‐binding protein, Caf20	3
Gre factors prevent thermal and mechanical stresses induced by terahertz irradiation during transcription	3
Local anesthetic lidocaine induces growth suppression of HeLa cells by decreasing and changing the cellular localization of the proliferation marker Ki‐67	3
Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	3
EGL‐4/PKG regulates the role of an interneuron in a chemotaxis circuit of C. elegans through mediating integration of sensory signals	3