Genes to Cells

Article	Citations
An ALS‐associated KIF5A mutant forms oligomers and aggregates and induces neuronal toxicity	29
The role of eutherian‐specific RTL1 in the nervous system and its implications for the Kagami‐Ogata and Temple syndromes	26
Chromatin remodeling in replication‐uncoupled maintenance DNA methylation and chromosome stability: Insights from ICF syndrome studies	20
Visualizing looping of two endogenous genomic loci using synthetic zinc‐finger proteins with anti‐FLAG and anti‐HA frankenbodies in living cells	18
XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 fr	16
VCP relocalization limits mitochondrial activity, GSH depletion and ferroptosis during starvation in PC3 prostate cancer cells	15
Meflin defines mesenchymal stem cells and/or their early progenitors with multilineage differentiation capacity	13
Overexpression of neural miRNAs miR‐9/9* and miR‐124 suppresses differentiation to Müller glia and promotes differentiation to neurons in mouse retina in vivo	13
miR‐29c‐3p regulates TET2 expression and inhibits autophagy process in Parkinson's disease models	12
Sulfur depletion induces autophagy through Ecl1 family genes in fission yeast	12
RNA polymerase II condensate formation and association with Cajal and histone locus bodies in living human cells	12
Chromosome counting in the mouse zygote using low‐invasive super‐resolution live‐cell imaging	12
Improved anti‐solid tumor response by humanized anti‐podoplanin chimeric antigen receptor transduced human cytotoxic T cells in an animal model	12
MiR‐382‐5p suppresses M1 macrophage polarization and inflammatory response in response to bronchopulmonary dysplasia through targeting CDK8: Involving inhibition of STAT1 pathway	12
Sonic hedgehog signals hinder the transcriptional network necessary for pancreatic endoderm formation from human embryonic stem cells	11
Identification and characterization of the antigen recognized by the germ cell mAb TRA98 using a human comprehensive wet protein array	11
Single‐shot quantitative phase imaging as an extension of differential interference contrast microscopy	10
(Pro)renin receptor/ATP6AP2 is required for autophagy and regulates proliferation in lung adenocarcinoma cells	10
Growth and division mode plasticity is dependent on cell density in marine‐derived black yeasts	10
Human SIRT2 and SIRT3 deacetylases function in DNA homologous recombinational repair	10
Amyotrophic lateral sclerosis‐associated Vap33 is required for maintaining neuronal dendrite morphology and organelle distribution in Drosophila	10
Extension of chronological lifespan in Schizosaccharomyces pombe	10
G‐quadruplex‐forming nucleic acids interact with splicing factor 3B subunit 2 and suppress innate immune gene expression	10
The structure of POMGNT2 provides new insights into the mechanism to determine the functional O‐mannosylation site on α‐dystroglycan	10
polished rice mediates ecdysone‐dependent control of Drosophila embryonic organogenesis	9

Deltex positively regulates Toll signaling in a JNK independent manner in Drosophila	9
Sonic hedgehog expands neural stem cells in the neocortical region leading to an expanded and wrinkled neocortical surface	9
Dorsal–lateral clock neurons modulate consolidation and maintenance of long‐term memory in Drosophila	9
Roles of the second messenger c‐di‐GMP in bacteria: Focusing on the topics of flagellar regulation and Vibrio spp.	9
Protease inhibitory activity of secretory leukocyte protease inhibitor ameliorates murine experimental colitis by protecting the intestinal epithelial barrier	8
Mulberry fruit extract alleviates the intracellular amyloid‐β oligomer‐induced cognitive disturbance and oxidative stress in Alzheimer’s disease model mice	8
Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality	8
The structure–function analysis of Obg‐like GTPase proteins along the evolutionary tree from bacteria to humans	8
Importin α2 association with chromatin: Direct DNA binding via a novel DNA‐binding domain	7
Down‐regulation of dual‐specificity phosphatase 6, a negative regulator of oncogenic ERK signaling, by ACA‐28 induces apoptosis in NIH/3T3 cells overexpressing HER2/ErbB2	7
Polyvinyl alcohol scaffolds and supplementation support 3D and sphere culturing of human cancer cell lines by reducing apoptosis and promoting cellular proliferation	7
14–3‐3γ prevents centrosome duplication by inhibiting NPM1 function	7
Expression of Cds4/5 of Arabidopsis chloroplasts in E. coli reveals the membrane topology of the C‐terminal region of CDP‐diacylglycerol synthases	7
Ubiquitination‐dependent and ‐independent repression of target genes by SETDB1 reveal a context‐dependent role for its methyltransferase activity during adipogenesis	7
SET‐NUP214 and MLL cooperatively regulate the promoter activity of the HoxA10 gene	7
Transcriptome analysis of gene expression changes upon enzymatic dissociation in skeletal myoblasts	7
Characterization of phalloidin‐negative nuclear actin filaments in U2OS cells expressing cytoplasmic actin‐EGFP	7
Potential involvement of DSCAML1 mutations in neurodevelopmental disorders	6
Identification ofksg1mutation showing long‐lived phenotype in fission yeast	6
The intrinsically disordered N‐terminal region of mouse DNA polymerase alpha mediates its interaction with POT1a/b at telomeres	6
Development of novel potent ligands for GPR85, an orphan G protein‐coupled receptor expressed in the brain	6
Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain	6
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope	6
Production of therapeutic iduronate‐2‐sulfatase enzyme with a novel single‐stranded RNA virus vector	6
UV‐induced DNA damage disrupts the coordination between replication initiation, elongation and completion	6
Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity	6
Dynein intermediate chains DYCI‐1 and WDR‐60 have specific functions in Caenorhabditis elegans	5
Evaluation of repair activity by quantification of ribonucleotides in the genome	5
Quick and affordable DNA cloning by reconstitution of Seamless Ligation Cloning Extract using defined factors	5
Glioma cells remotely promote erythropoiesis as a self‐expanding strategy of cancer stem cells	5
Pbp1 mediates the aberrant expression of genes involved in growth defect of ccr4∆ and pop2∆ mutants in yeast Saccharomyces cerevisiae	5
Periodic albinism of a widely used albino mutant of Xenopus laevis caused by deletion of two exons in the Hermansky–Pudlak syndrome type 4 gene	5
Planar cell polarity protein Vangl2 and its interacting protein Ap2m1 regulate dendritic branching in cortical neurons	5
Identification of CD56dim subpopulation marked with high expression of GZMB/PRF1/PI‐9 in CD56+ interferon‐α‐induced dendritic cells	5
GM‐CSF‐producing CCR2+CCR6+ Th17 cells are pathogenic in dextran sodium sulfate‐induced colitis model in mice	5
Researchers support preprints and open access publishing, but with reservations: A questionnaire survey of MBSJ members	5
Cytoplasmic granule formation by FUS‐R495X is attributable to arginine methylation in all Gly‐rich, RGG1 and RGG2 domains	5
Formation of multiple flagella caused by a mutation of the flagellar rotor protein FliM in Vibrio alginolyticus	5
Vrk2 deficiency elicits aggressive behavior in female zebrafish	5
ISG20 and nuclear exosome promote destabilization of nascent transcripts for spliceosomal U snRNAs and U1 variants	5
The TIGD5 gene located in 8q24 and frequently amplified in ovarian cancers is a tumor suppressor	4
Drosophila telomere capping protein HOAP interacts with DSB sensor proteins Mre11 and Nbs	4
BAP1 depletion in human B‐lymphoblast cells affects the production of innate immune cytokines and chemokines	4
The SUN1 splicing variants SUN1_888 and SUN1_916 differentially regulate nucleolar structure	4
Trimethylguanosine synthase 1 (Tgs1) is involved in Swi6/HP1‐independent siRNA production and establishment of heterochromatin in fission yeast	4
Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process	4
Genetic inhibition of collapsin response mediator protein‐2 phosphorylation ameliorates retinal ganglion cell death in normal‐tension glaucoma models	4
LincRNA‐p21 exon 1 expression correlates with Cdkn1a expression in vivo	4
SH3P2 suppresses osteoclast differentiation through restricting membrane localization of myosin 1E	4
TAZ inhibits acinar cell differentiation but promotes immature ductal cell proliferation in adult mouse salivary glands	4

Comprehensive lipidomics of lupus‐prone mice using LC–MS/MS identifies the reduction of palmitoylethanolamide that suppresses TLR9‐mediated inflammation	4
Enhancement of leukemia‐like phenotypes in Drosophila mxc mutant larvae due to activation of the RAS‐MAP kinase cascade possibly via down‐regulation of DE‐cadherin	4
ZomB is essential for chemotaxis of Vibrio alginolyticus by the rotational direction control of the polar flagellar motor	4
TET3 dioxygenase modulates gene conversion at the avian immunoglobulin variable region via demethylation of non‐CpG sites in pseudogene templates	4
Lumicrine signaling: Extracellular regulation of sperm maturation in the male reproductive tract lumen	4
Squamous cell carcinoma‐derived G‐CSF promotes tumor growth and metastasis in mice through neutrophil recruitment and tumor cell proliferation, associated with poor prognosis of the patient	4
Effect of volatile fatty acids on adipocyte differentiation in bovine dedifferentiated fat (DFAT) cells in vitro	4
Horizontal transfer of domains in ssrA gene among Enterobacteriaceae	4
Nondomain biopolymers: Flexible molecular strategies to acquire biological functions	4
Post‐translational modifications of proteins associated with yeast peroxisome membrane: An essential mode of regulatory mechanism	4
ETS‐dependent enhancers for endothelial‐specific expression of serum/glucocorticoid‐regulated kinase 1 during mouse embryo development	4
The anti‐inflammatory effect of metformin: The molecular targets	4
CREG1 improves diet‐induced obesity via uncoupling protein 1‐dependent manner in mice	3
Red light‐regulated interaction of Per‐Arnt‐Sim histidine kinases with partner histidine‐containing phosphotransfer proteins in Physcomitrium patens	3
Di‐lysine motif‐like sequences formed by deleting the C‐terminal domain of aquaporin‐4 prevent its trafficking to the plasma membrane	3
Intranasal Sendai virus‐based SARS‐CoV‐2 vaccine using a mouse model	3
Amphibian thrombocyte‐derived extracellular vesicles, including microRNAs, induce angiogenesis‐related genes in endothelial cells	3
N‐(3,4‐dimethoxyphenethyl)‐6‐methyl‐2,3,4,9‐tetrahydro‐1H‐carbazol‐1‐amine inhibits bladder cancer progression by suppressing YAP1/TAZ	3
Ubiquitin proteasome system in circadian rhythm and sleep homeostasis: Lessons from Drosophila	3
The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans	3
UV‐induced activation of ATR is mediated by UHRF2	3
Systemic innate immune response induces death of olfactory receptor neurons in Drosophila	3
Sima, a Drosophila homolog of HIF‐1α, in fat body tissue inhibits larval body growth by inducing Tribbles gene expression	3
GATA2 participates in the recanalization of lymphatic vessels after surgical lymph node extirpation	3
The ribonuclease domain function is dispensable for SLFN11 to mediate cell fate decision during replication stress response	3
Inhibition of lipopolysaccharide‐induced inflammatory responses by 1′‐acetoxychavicol acetate	3
Mitochondrial dynamics and degradation in the oleaginous yeast Lipomyces starkeyi	3
The impact of SETBP1 mutations in neurological diseases and cancer	3
Marsupial genome analysis suggests that satellite DNA formation from walb endogenous retrovirus is an event specific to the red‐necked wallaby	3
Yeast Tor complex 1 phosphorylates eIF4E‐binding protein, Caf20	3
Gre factors prevent thermal and mechanical stresses induced by terahertz irradiation during transcription	3
Local anesthetic lidocaine induces growth suppression of HeLa cells by decreasing and changing the cellular localization of the proliferation marker Ki‐67	3
Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression	3
EGL‐4/PKG regulates the role of an interneuron in a chemotaxis circuit of C. elegans through mediating integration of sensory signals	3
Single‐cell dissection reveals the role of DNA damage response patterns in tumor microenvironment components contributing to colorectal cancer progression and immunotherapy	3
A DNA repair player, ring finger protein 43, relieves etoposide‐induced topoisomerase II poisoning	3
Lineage tracing identifies in vitro microglia‐to‐neuron conversion by NeuroD1 expression	3
Behavioral screening of sleep‐promoting effects of human intestinal and food‐associated bacteria on Drosophila melanogaster	3
Microtubule inhibitors identified through nonbiased screening enhance DNA transfection efficiency by delaying p62‐dependent ubiquitin recruitment	2
Physcomitrium patens pentatricopeptide repeat protein PpPPR_32 is involved in the accumulation of psaC mRNA encoding the iron sulfur protein of photosystem I	2
HOXB7 induces STAT3‐mediated transformation and lung metastasis in immortalized mammary gland NMuMG cells	2
Identification of TEKTIN1‐expressing multiciliated cells during spontaneous differentiation of non‐human primate embryonic stem cells	2
Hypoxia stabilizes the H2O2‐producing oxidase Nox4 in cardiomyocytes via suppressing autophagy‐related lysosomal degradation	2
DHX36 maintains genomic integrity by unwinding G‐quadruplexes	2
Quick validation of genetic quality for conditional alleles in mice	2
CdsA, a CDP‐diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons	2
Cysteine residues in the fourth zinc finger are important for activation of the nitric oxide‐inducible transcription factor Fzf1 in the yeast Saccharomyces cerevisiae	2
Switching defective/sucrose non‐fermenting chromatin remodeling complex coordinates meiotic gene activation via promoter remodeling and Meiosin activation in female germline	2
Rhythmic adenosine triphosphate release from the cyanobacterial circadian clock protein KaiC revealed by real‐time monitoring of bioluminescence using firefly luciferase	2
A role of cryptochrome for magnetic field‐dependent improvement of sleep quality, lifespan, and motor function in Drosophila	2
MKK7 deficiency in mature neurons impairs parental behavior in mice	2
Autonomous and intercellular chemokine signaling elicited from mesenchymal stem cells regulates migration of undifferentiated gastric cancer cells	2
Luciferase‐based quantification of membrane fusion induced by SARS‐CoV‐2 S protein	2
Interleukin‐3‐dependent potentiation of IgE responsiveness in mouse basophils	2
Roles of linker region flanked by transmembrane and peptidoglycan binding region of PomB in energy conversion of the Vibrio flagellar motor	2
A novel method to purify neutrophils enables functional analysis of zebrafish hematopoiesis	2
E‐cadherin‐dependent coordinated epithelial rotation on a two‐dimensional discoidal pattern	2
A nuclear pore complex‐associated regulation of SUMOylation in meiosis	2
Differential effects of the formin inhibitor SMIFH2 on contractility and Ca2+ handling in frog and mouse cardiomyocytes	2
The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells	2
INT6/eIF3e represses E‐cadherin expression through HIF2α in lung carcinoma A549 cells	2
Generation of metabolically functional hepatocyte‐like cells from dedifferentiated fat cells by Foxa2, Hnf4a and Sall1 transduction	2
Wnt10b knockdown promotes UCP1 expression in brown adipose tissue in mice	1
TBK1 inhibitors enhance transfection efficiency by suppressing p62/SQSTM1 phosphorylation	1
Ectopic expression of matrix metalloproteinases and filopodia extension via JNK activation are involved in the invasion of blood tumor cells in Drosophila mxc mutant	1
Dilp8 and its candidate receptor, Drl, are involved in the transdetermination of the Drosophila imaginal disc	1
The optimized priming effect of FGF‐1 and FGF‐2 enhances preadipocyte lineage commitment in human adipose‐derived mesenchymal stem cells	1
The role of Zfp352 in the regulation of transient expression of 2‐cell specific genes in mouse embryonic stem cells	1
BACH1 regulates erythrophagocytosis and iron‐recycling in β‐thalassemia	1
Role of Wnt5b‐Ror1 signaling in the proliferation of pancreatic ductal adenocarcinoma cells	1
Epithelial miR‐215 negatively modulates Th17‐dominant inflammation by inhibiting CXCL12 production in the small intestine	1
Characterization of mouse embryonic fibroblasts derived from Rassf6 knockout mice shows the implication of Rassf6 in the regulation of NF‐κB signaling	1
The joy of the 11th International Fission Yeast Meeting in Hiroshima (POMBE2023 Hiroshima) after a long wait due to the COVID‐19 pandemic	1
Stimulatory role of nectin‐4 and p95‐ErbB2 in multilayered T47D cell proliferation	1
Cryo‐EM structure and biochemical analyses of the nucleosome containing the cancer‐associated histone H3 mutation E97K	1
Cathepsin L prevents the accumulation of alpha‐synuclein fibrils in the cell	1
Dynamics of actomyosin filaments in the contractile ring revealed by ultrastructural analysis	1
Evolutionary features of ligands and their receptors via protein–protein interactions and essentiality in primates	1
A simple, rapid, and efficient method for generating multigene‐knockout culture cells by the CRISPR/Cas9 system	1
Staphylococcal superantigen‐like protein 3 triggers murine mast cell adhesion by binding to CD43 and augments mast cell activation	1

The histone H3K36 demethylase Fbxl11 plays pivotal roles in the development of retinal late‐born cell types	1
Unpaired nucleotides on the stem of microRNA precursor are important for precise cleavage by Dicer‐like 1 in Arabidopsis	1
Self‐recognition through Dectin‐1 exacerbates liver inflammation	1
Impacts of methotrexate on survival, dendrite development, and synapse formation of cortical neurons	1
Machine learning approach identifies prominent codons from different degenerate groups influencing gene expression in bacteria	1
Breaking self‐regulation of Regnase‐1 promotes its own protein expression	1
The PKM2 inhibitor shikonin enhances piceatannol‐induced apoptosis of glyoxalase I‐dependent cancer cells	1
The role of SCFSkp2 and SCFβ‐TrCP1/2 in the cerebellar granule cell precursors	1
DNA double‐strand breaks regulate the cleavage‐independent release of Rec8‐cohesin during yeast meiosis	1
Maternal epigenetic factors in embryonic and postnatal development	1
Potential negative effect of total parenteral nutrition on the human circadian clock	1
Transcriptional regulation of adipogenin expression in liver steatosis by hepatic peroxisome proliferator‐activated receptor gamma	1
Transcriptional features of low‐grade neuroepithelial tumors with the BRAF V600E mutation associated with epileptogenicity	1
Machine learning extracts oncogenic‐specific γ‐H2AX foci formation pattern upon genotoxic stress	1
Regulation of constant cell elongation and Sfm pili synthesis in Escherichia coli via two active forms of FimZ orphan response regulator	1
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Mode of SUV420H2 heterochromatin localization through multiple HP1 binding motifs in the heterochromatic targeting module	1
Meiotic DNA double‐strand break‐independent role of protein phosphatase 4 in Hop1 assembly to promote meiotic chromosome axis formation in budding yeast	1
Integrated conjugal plasmid pLS20 in the Bacillus subtilis genome produced 850‐kbp circular subgenomes transmissible to another B. subtilis	1
Microtubule‐affinity regulating kinase family members distinctively affect tau phosphorylation and promote its toxicity in a Drosophila model	1
Delineation of biliary epithelial cell dynamics in maternal liver during pregnancy	1
PARP1 is activated by membrane damage and is involved in membrane repair through poly(ADP‐ribosyl)ation	1
Bcat1 is controlled by Tsc2/mTORC1 pathway at expression levels and its deficiency together with Bcat2 inactivation suppresses the growth of a Tsc2−/− tumor cel	1
Ror1 promotes PPARα‐mediated fatty acid metabolism in astrocytes	1
Isoliquiritigenin inhibits NLRP3 inflammasome activation with CAPS mutations by suppressing caspase‐1 activation and mutated NLRP3 aggregation	1
Turnover of EDEM1, an ERAD‐enhancing factor, is mediated by multiple degradation routes	1
The cell type‐specific ER membrane protein UGS148 is not essential in mice	1
Loss of Caenorhabditis elegans homologue of human MOB4 compromises life span, health life span and thermotolerance	1
Unbiased prediction of off‐target sites in genome‐edited rice using SITE‐Seq analysis on a web‐based platform	1
Regulation mechanisms of CARMA1–Bcl10–MALT1 complex assembly inferred from the analysis of TRAF6‐deficient cells	1
Effect of eribulin on epithelial–mesenchymal transition plasticity in metastatic breast cancer: An exploratory, prospective study	1
Egg components reverse the atrophy induced by injury in skeletal muscles	1
Visualization of the landscape of the read alignment shape of ATAC‐seq data using Hellinger distance metric	1
Generating a new mouse model for nuclear PTEN deficiency by a single K13R mutation	1
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DNMT1 can induce primary germ layer differentiation through de novo DNA methylation	0
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Clover: An unbiased method for prioritizing differentially expressed genes using a data‐driven approach	0
ACAGT‐007a, an anti‐cancer compound that modulates ERK MAPK signaling, induces nuclear enrichment of phosphorylated ERK in T3M4 pancreatic cancer cells	0
Histone H3.3 chaperone HIRA renders stress‐responsive genes poised for prospective lethal stresses in acquired tolerance	0
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RNA–DNA hybrids on protein coding genes are stabilized by loss of RNase H and are associated with DNA damages during S‐phase in fission yeast	0
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The toxicity of dysregulated Plk1 activity revealed by its suppressor mutations	0
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Chimera RNA transcribed from integrated HPV18 genome with adjacent host genomic region promotes oncogenic gene expression through condensate formation	0
Lineage tracing using Wnt2b‐2A‐CreERT2 knock‐in mice reveals the contributions of Wnt2b‐expressing cells to novel subpopulations of mesothelial/epicardial cell lineages during mouse deve	0
Antibiotic effects on gut microbiota modulate diet‐induced metabolic dysfunction‐associated steatohepatitis development in C57BL/6 mice	0
Metastatic potentials classified with hypoxia‐inducible factor 1 downstream genes in pan‐cancer cell lines	0
Correction to ‘The role of transcriptional coactivator TRAP220 in myelomonocytic differentiation’	0
Mutations equivalent to Drosophila mago nashi mutants imply reduction of Magoh protein incorporation into exon junction complex	0
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The 33rd International Conference on Arabidopsis Research (ICAR2023)	0
Wnt 2022 EMBO | the Company of Biologists workshop and Yamada conference	0
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“The 10th International MDM2 Workshop”: Opening up new avenues for MDM2 and p53 research, the First International MDM2 Workshop in Asia	0
Physiological concentrations of glucocorticoids induce pathological DNA double‐strand breaks	0
The CRK14 gene encoding a cysteine‐rich receptor‐like kinase is implicated in the regulation of global proliferative arrest in Arabidopsis thaliana	0
Daidara: A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome	0
Pkd2, mutations linking to autosomal dominant polycystic kidney disease, localizes to the endoplasmic reticulum and regulates calcium signaling in fission yeast	0
Meeting report: AT workshop 2023—A platform for discussing cutting‐edge science in DNA damage signaling, repair, and human disorders	0
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GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae	0
A novel transcription factor Sdr1 involving sulfur depletion response in fission yeast	0
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Cdc7 kinase is required for postnatal brain development	0
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Neonatal Fc receptor is a functional receptor for classical human astrovirus	0
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Potential of HMGB‐inhibitory oligodeoxynucleotide ISM ODN to neutrophil recruitment in mouse model of hepatitis	0
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Mapping of the regions implicated in nuclear localization of multi‐functional DNA repair endonuclease XPF‐ERCC1	0
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Expression of lipid transport‐associated genes in lipid‐deprived cancer cells	0
Differential dependence on microbiota of IL‐23/IL‐22‐dependent gene expression between the small‐ and large‐intestinal epithelia	0
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Long‐term sorbitol consumption affects the hippocampus and alters cognitive function in aged mice	0
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Dose‐dependent effects of histone methyltransferase NSD2 on site‐specific double‐strand break repair	0