OOIR: Observatory of International Research

Papers

(The TQCC of Microbiology-SGM is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)

Article	Citations
Validation of a random Vibrio parahaemolyticus genomic library by selection of quinolone resistance in a heterologous host	150
Pharmaco-psychiatry and gut microbiome: a systematic review of effects of psychotropic drugs for bipolar disorder	120
Genome-wide analysis of genes involved in efflux function and regulation within Escherichia coli and Salmonella enterica serovar Typhimurium	92
Microbe Profile: Nitrosopumilus maritimus	85
The nisin O cluster: species dissemination, candidate leader peptide proteases and the role of regulatory systems	60
Mutation of putative glycosyl transferases PslC and PslI confers susceptibility to antibiotics and leads to drastic reduction in biofilm formation in Pseudomonas aeruginosa	46
Combined effect of SAR-endolysin LysKpV475 with polymyxin B and Salmonella bacteriophage phSE-5	46
Culturomics from field-grown crop plants using dilution to extinction, two-step library preparation and amplicon sequencing	45
Characterization of tigurilysin, a novel human CD59-specific cholesterol-dependent cytolysin, reveals a role for host specificity in augmenting toxin activity	44
Antibiotic use in rural Kenyan livestock: navigating misuse, experience gaps and AMR risks	43
Erratum: The type-VI secretion system of the beneficial symbiont Vibrio fischeri	42
Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast Kluyveromyces marxianus	42
Comments on the tolerance of Clostridioides difficile spores to disinfection with sodium hypochlorite disinfectant	41
Fitness costs of CRISPR-Cas systems in bacteria	39
Evolution of cyclic di-GMP signalling on a short and long term time scale	38
Natural products from food sources can alter the spread of antimicrobial resistance plasmids in Enterobacterales	38
Bacterial secretion system functions: evidence of interactions and downstream implications	35
Topology of the Shigella flexneri Enterobacterial Common Antigen polymerase WzyE	32
A single amino acid exchange converts FocA into a unidirectional efflux channel for formate	31
The impact of cystic fibrosis transmembrane conductance regulator (CFTR) modulators on the pulmonary microbiota	30
Recruitment of C4b-binding protein is not a complement evasion strategy employed by Staphylococcus aureus	29
Generation of tools for expression and purification of the phage-encoded Type I restriction enzyme inhibitor, Ocr	29
Suppressor mutants demonstrate the metabolic plasticity of unsaturated fatty acid synthesis in Pseudomonas aeruginosa PAO1	28
Development of a long-read next generation sequencing workflow for improved characterization of fastidious respiratory mycoplasmas	27
Purification and characterization of a novel antibacterial peptide against Clostridium perfringens	27

Sweet and sour synergy: exploring the antibacterial and antibiofilm activity of acetic acid and vinegar combined with medical-grade honeys	26
Microbial Primer: Biosurfactants – the ABCs of microbial surface-active metabolites	26
Lactobacilli and human dental caries: more than mechanical retention	25
Aspartate aminotransferase of Rhizobium leguminosarum has extended substrate specificity and metabolizes aspartate to enable N2 fixation in pea nodules	23
An invasive phenotype induced by relaxation of DNA supercoiling in Campylobacter jejuni triggers disruption of tight junctions of intestinal spheroids	23
Erratum: DNA damage-induced block of sporulation in Streptomyces venezuelae involves downregulation of ssgB	23
Exploiting cooperative pathogen behaviour for enhanced antibiotic potency: A Trojan horse approach	23
An abundance of aliC and aliD genes were identified in saliva using a novel multiplex qPCR to characterize group II non-encapsulated pneumococci with improved specificity	21
Triclosan-resistant small-colony variants of Staphylococcus aureus produce less capsule, less phenol-soluble modulins, and are attenuated in a Galleria mellonella model of infection	21
Phylogenetic groups and extraintestinal virulence genes of inflow Escherichia coli entering a municipal drinking water treatment facility (St. Paul, MN, USA)	21
Assessing the effect of temperature on Rhodococcus metabolite production	20
Alterations in cell arrangements of group B streptococcus due to virulence factor expression can bias estimates of bacterial populations based on colony count measures	20
Study of excess manganese stress response highlights the central role of manganese exporter Mnx for holding manganese homeostasis in the cyanobacterium Synechocystis sp. PCC 6803	20
Preclinical testing of antimicrobials for cystic fibrosis lung infections: current needs and future priorities	20
The primary transcriptome of hormogonia from a filamentous cyanobacterium defined by cappable-seq	19
Microbe Profile: Bacteriophage ϕ6: a model for segmented RNA viruses and the evolutionary consequences of viral ‘sex’	19
Before you go: a packing list for portable DNA sequencing of microbiomes and metagenomes	18
Microbe Profile: Ruminococcus gnavus: the yin and yang of human gut symbionts	18
Structure and ligand binding in the putative anti-microbial peptide transporter protein, YejA	17
Deletion of fbiC in Streptomyces venezuelae removes autofluorescence in the excitation-emission range of cyan fluorescent protein	17
DNA damage-induced block of sporulation in Streptomyces venezuelae involves downregulation of ssgB	17
Microbial musings – Summer 2022	17
Structural and functional characteristics of the tripartite ABC transporter	17
Genome analysis and phenotypic characterization of Halomonas hibernica isolated from a traditional food process with novel quorum quenching and catalase activities	17
Microbe Profile: Salinispora tropica: natural products and the evolution of a unique marine bacterium	16
Understanding the clinical and environmental drivers of antifungal resistance in the One Health context	15
Erratum: Mutation of putative glycosyl transferases PslC and PslI confers susceptibility to antibiotics and leads to drastic reduction in biofilm formation in Pseudomonas aeruginosa	15
Cell-free supernatants produced by lactic acid bacteria reduce Salmonella population in vitro	15
The respiratory lipoquinone, menaquinone, functions as an inducer of genes regulated by the Mycobacterium smegmatis repressor MSMEG_2295	15
Analysis of mouse faecal dysbiosis, during the development of cachexia, induced by transplantation with Lewis lung carcinoma cells	15
Response to comments on the tolerance to Clostridioides difficile spores to sodium hypochlorite disinfection	15
Interbacterial competition mediated by the type VIIb secretion system	15
Genetic and phenotypic analysis of the virulence plasmid of a non-Shigatoxigenic enteroaggregative Escherichia coli O104:H4 outbreak strain	15
Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience	15
Effects of influenza A infection on liberation of bacteria from biofilms and inflammatory response in an in vitro model of chronic rhinosinusitis	15
Microbe Profile: Buchnera aphidicola: ancient aphid accomplice and endosymbiont exemplar	14
Strain background of Candida albicans interacts with SIR2 to alter phenotypic switching	14
Role of Pel and Psl polysaccharides in the response of Pseudomonas aeruginosa to environmental challenges: oxidative stress agents (UVA, H2O2, sodium hypochlorite) and its competitor Staphylococcus au	14
Streptococcus pneumoniae: ‘captain of the men of death’ and financial burden	14
Frequency of quorum-sensing mutations in Pseudomonas aeruginosa strains isolated from different environments	14
Use of Rgg quorum-sensing machinery to create an innovative recombinant protein expression system in Streptococcus thermophilus	14
Genome-wide mapping of cAMP receptor protein binding in enteroaggregative Escherichia coli reveals targeting of virulence-associated genes	14
RsaM: a unique dominant regulator of AHL quorum sensing in bacteria	14
A comprehensive list of bacterial pathogens infecting humans	13
Assay development and inhibition of the Mt-DprE2 essential reductase from Mycobacterium tuberculosis	13
Microbial Primer: The bacterial flagellum – how bacteria swim	13
Disulphide bond-forming enzymes in clostridial species	13
Symbiont-mediated immune priming in animals through an evolutionary lens	13
Plasmodium falciparum hydroxymethylbilane synthase does not house any cosynthase activity within the haem biosynthetic pathway	12
New perspectives on an ancient pathogen: thoughts for World Tuberculosis Day 2022	12

Microbe Profile: Geobacter metallireducens: a model for novel physiologies of biogeochemical and technological significance	12
A novel proteinaceous molecule produced by Lysinibacillus sp. OF-1 depends on the Ami oligopeptide transporter to kill Streptococcus pneumoniae	12
Looking through the FOG: microbiome characterization and lipolytic bacteria isolation from a fatberg site	12
Acinetobacter baumannii ATCC 17978 encodes a microcin system with antimicrobial properties for contact-independent competition	12
Comparative genomic analysis of Latilactobacillus sakei strains provides new insights into their association with different niche adaptations	12
Staph wars: the antibiotic pipeline strikes back	11
Identification of a system for hydroxamate xenosiderophore-mediated iron transport in Burkholderia cenocepacia	11
Investigation of the polyamine biosynthetic and transport capability of Streptococcus agalactiae: the non-essential PotABCD transporter	11
Quantifying stochastic establishment of mutants in microbial adaptation	11
Transcription factors DksA and PsrA are synergistic contributors to Legionella pneumophila virulence in Acanthamoeba castellanii protozoa	11
Exploring functional interplay amongst Escherichia coli efflux pumps	10
Mutational hotspots lead to robust but suboptimal adaptive outcomes in certain environments	10
Identification of a morphogene required for tapered filament termini in filamentous cyanobacteria	10
The biogenesis of β-lactamase enzymes	10
Genetic and mutational analysis of virulence traits and their modulation in an environmental toxigenic Vibrio cholerae non-O1/non-O139 strain, VCE232	10
Microbial Primer: Phase variation - survival and adaptability by generation of a diverse population	10
Soil microbial gene expression in an agricultural ecosystem varies with time and neonicotinoid seed treatments	10
Characterization of MLST-99 Salmonella Typhimurium and the monophasic variant I:4,[5],12:i:- isolated from Canadian Atlantic coast shellfish	10
Emergence of clade 3 emm89 group A Streptococcus in Queensland, Australia	10
Oxygen microenvironments in Escherichia coli biofilm nutrient transport channels: insights from complementary sensing approaches	10
Microbe Profile: Salmonella Typhimurium: the master of the art of adaptation	10
Efflux-mediated tolerance to cationic biocides, a cause for concern?	10
KpSC-ID: a multiplex real-time PCR assay for the simultaneous detection of the Klebsiella pneumoniae species complex and specific identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae an	10
Regulatory role of CsuR (YiaU) in determination of cell surface properties of Escherichia coli K-12	10
Isolation and identification of chlorate-reducing Hafnia sp. from milk	10
Characterization of microbial communities from rumen and large intestine of lactating creole goats grazing in arid plant communities	9
Modelling host–pathogen interactions: Galleria mellonella as a platform to study Pseudomonas aeruginosa response to host-imposed zinc starvation	9
Quorum-sensing, intra- and inter-species competition in the staphylococci	9
Regulation of phosphate starvation-specific responses in Escherichia coli	9
Characterizing a stable five-species microbial community for use in experimental evolution and ecology	9
Gene expression reprogramming of Pseudomonas alloputida in response to arginine through the transcriptional regulator ArgR	9
Topological analysis of a bacterial DedA protein associated with alkaline tolerance and antimicrobial resistance	9
Microbial Primer: What is the stringent response and how does it allow bacteria to survive stress?	9
Seasonal variation in the stomach microbiota of two sympatrically breeding Pygoscelis penguin species at Signy Island, South Orkney Islands	9
Genomic and functional insights into antibiotic resistance genes floR and strA linked with the SXT element of Vibrio cholerae non-O1/non-O139	9
Comment on the effectiveness of sodium hypochlorite against Clostridioides difficile spores	9
Regulation of type VI secretion systems at the transcriptional, posttranscriptional and posttranslational level	9
Biotin concentration affects anaplerotic reactions functioning in glutamic acid production in Corynebacterium glutamicum	9
Mechanism of assembly of type 4 filaments: everything you always wanted to know (but were afraid to ask)	9
4′-Deoxypyridoxine disrupts vitamin B6 homeostasis in Escherichia coli K12 through combined inhibition of cumulative B6 uptake and PLP-dependent enzyme activity	9
Construction and characterisation of a structured, tuneable, and transparent 3D culture platform for soil bacteria	9
Clostridioides difficile infection: traversing host–pathogen interactions in the gut	9
d-Serine induces distinct transcriptomes in diverse Escherichia coli pathotypes	9
Genetic modification of Candida maltosa, a non-pathogenic CTG species, reveals EFG1 function	8
Microbial Primer: Lipopolysaccharide – a remarkable component of the Gram-negative bacterial surface	8
100+ years of phase variation: the premier bacterial bet-hedging phenomenon	8
T-DNA insertion mutagenesis in Penicillium brocae results in identification of an enolase gene mutant impaired in secretion of organic acids and phosphate solubilization	8
Broadening the application of Yarrowia lipolytica synthetic biology tools to explore the potential of Yarrowia clade diversity	8
Population heterogeneity in Mycobacterium smegmatis and Mycobacterium abscessus	8
Exploration of the presence and abundance of multidrug resistance efflux genes in oil and gas environments	8
Predatory bacteria in the haemolymph of the cultured spiny lobster Panulirus ornatus	8
A new model of endotracheal tube biofilm identifies combinations of matrix-degrading enzymes and antimicrobials able to eradicate biofilms of pathogens that cause ventilator-associated pneumonia	8
Transcriptional profiling of Pseudomonas aeruginosa mature single- and dual-species biofilms in response to meropenem	8
Rapid divergence in independent aspects of the compatibility phenotype in a Spiroplasma–Drosophila interaction	8
The involvement of CiaR and the CiaR-regulated serine protease HtrA in thermal adaptation of Streptococcus pneumoniae	8
Microbe Profile: Euglena gracilis: photogenic, flexible and hardy	8
Distribution of mutation rates challenges evolutionary predictability	8
Killing in the name of: T6SS structure and effector diversity	8
Time-lapse mesoscopy of Candida albicans and Staphylococcus aureus dual-species biofilms reveals a structural role for the hyphae of C. albicans in biofilm formation	8
Membrane lipid and osmolyte readjustment in the alkaliphilic micromycete Sodiomyces tronii under cold, heat and osmotic shocks	8
Escherichia coli type-1 fimbriae are critical to overcome initial bottlenecks of infection upon low-dose inoculation in a porcine model of cystitis	8