Microbes and Environments

Papers
(The median citation count of Microbes and Environments is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)
ArticleCitations
Genome-wide Characterization of Non-shared Sequences among Amphora-shaped Giant Viruses64
Unique Rhizobial Communities Dominated by <i>Bradyrhizobium liaoningense</i> and <i>Bradyrhizobium ottawaense</i> were Found in Vegetable Soybean Nodules in Osaka Prefecture, J18
Size Distribution and Pathogenic Potential of Culturable Airborne <i>Clostridium</i> spp. in a Suburb of Toyama City, Japan17
Risk Evaluation of <i>Verticillium</i> Wilt on Cabbage Grown in Soil Reused from Sediment Basins17
Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms16
Transcriptional Regulation of Methanol Dehydrogenases in the Methanotrophic Bacterium <i>Methylococcus capsulatus</i> Bath by Soluble and Insoluble Lanthanides15
Nitrogen-fixing Ability of a Thermophilic Sulfate-reducing Bacterium in the Genus <i>Thermodesulfovibrio</i> Isolated from a Terrestrial Hot Spring in Japan15
Restoration of Nitrate Respiration in <i>Pseudomonas aeruginosa</i> under Growth Limitations14
High Prevalence of <i>Pantoea</i> spp. in Microbiota Associated with the Sorghum Plant Bug <i>Stenotus rubrovittatus</i> (Heteroptera: Miridae)14
Performance of Marine Anammox <i>Candidatus</i> Scalindua sp. under High Nitrate Conditions in a Biofilm Reactor14
Investigation of Microbial Community Shifts under the Mizumoto Japanese Traditional Sake Brewing Process Using Chemical Analyses and High-throughput Sequencing13
Highly Reduced Complementary Genomes of Dual Bacterial Symbionts in the Mulberry Psyllid <i>Anomoneura mori</i>12
A Potential Indicator Gene, <i>tetM</i>, to Assess Contamination by Antibiotic Resistance Genes in Greenhouses in South Korea12
Regulation of Root Nodule Symbiosis by Soybean <i>Rj</i> Genotypes and Rhizobial Effectors11
Vertical Distribution and Seasonal Patterns of <i>Candidatus</i> Nitrotoga in a Sub-Alpine Lake11
Optimal Phosphate Concentration for Growth and Normal Functioning of Marine Anammox Bacteria, <i>Candidatus</i> Scalindua sp.11
Phylogeny and Physiological Diversity of Cold-adapted Anaerobic Bacteria Isolated from Rice Field Soil in Japan9
Genetic Diversity of Endospore-forming Nitrogen-fixing Bacteria and Their Future Application as Biofertilizers in the Central Dry Zone of Myanmar9
A Rechargeable Biomineral Induced by the Sulfate-reducing Bacterium <i>Nitratidesulfovibrio</i> sp. HK-II8
Nitrifying Communities in Biological Nitrogen Removal Processes at Tropical Municipal Wastewater Treatment Plants8
Global Distribution and Diversity of Marine Parmales7
Expanding the Eco-collection of Methane-oxidizing Bacteria Inhabiting Rice Roots: Cultivation, Isolation, and Genomic Characterization of Isolates7
Biocontrol of <i>Phytophthora</i> Root and Stem Rot and Growth Promotion of Soybean Plants by the Rhizobacterium <i>Enterobacter pseudoroggenkampii</i> Strain GVv1 Isolated fro7
Species-specific Microorganisms in Acid-tolerant <i>Chironomus</i> Larvae Reared in a Neutral pH Range under Laboratory Conditions: Single Dataset Analysis6
Diversity and Quantitative Detection of Clade I Type <i>nosZ</i> Denitrifiers in the Arabian Sea Oxygen Minimum Zone6
Amplicon Analysis of Dictean Cave Microbial Communities and Essential Oils as a Mild Biocide6
Temperature Effects on Symptom Expression of Lettuce Black Root Rot Caused by <i>Berkeleyomyces rouxiae</i>6
Improvements in the Duckweed-Microbe Co-cultivation Method for the Stable and Efficient Isolation of Rarely Cultivated Bacteria Using Microfilter Membranes6
Massive RNA Editing in Ascetosporean Mitochondria6
Physiological and Genomic Characterization of Oligotrophic <i>Nitrobacter</i> Isolated from a Forest Soil in Japan5
Cultivation of Piezotolerant and Piezophilic Hyperthermophiles with a Newly Developed Constant High Pressure and Temperature Culturing and Monitoring System5
Bioformulations Derived from <i>Enterobacter</i> sp. NRRU-N13 and Oligochitosan Alleviate Drought Stress in Thai Jasmine Rice (<i>Oryza sativa</i> L. var. KDML105)5
Two Distinct Enzymes Have Both Phytoene Desaturase and 3,4-Desaturase Activities Involved in Carotenoid Biosynthesis by the Extremely Halophilic Archaeon <i>Haloarcula japonica</i>5
Effects of Phosphate-solubilizing Bacteria on Soil Phosphorus Fractions and Supply to Maize Seedlings Grown in Lateritic Red Earths and Cinnamon Soils4
Differential Responses of Soil Ammonia-oxidizing Bacterial and Archaeal Communities to Land-use Changes in Zambia4
Syntrophic Interaction between an Anoxygenic Photosynthetic Bacterium and a Tetrathionate-reducing Bacterium in Anaerobic Benzoate Degradation4
Species-specific Primer and Probe Sets for Detection of Syntrophic Long-chain Fatty Acid-degrading Bacteria in Anaerobic Digestion Using Quantitative PCR4
<i>Legionella</i> Survives and Elongates in Algal Consortia Containing Bacteria in Alkaline Oligotrophic Conditions4
Self-cloning of the Catalase Gene in Environmental Isolates Improves Their Colony-forming Abilities on Agar Media4
Accelerated Iron Corrosion by Microbial Consortia Enriched from Slime-like Precipitates from a Corroded Metal Apparatus Deployed in a Deep-sea Hydrothermal System4
Characterization of Lactic Acid Bacteria from Fermented Fish (<i>pla-paeng-daeng</i>) and Their Cholesterol-lowering and Immunomodulatory Effects4
Rapid Diversification of a Natural Heterosigma akashiwo Virus Population during a Host Bloom4
Distribution and Characterization of the Novel Quorum-quenching Enzyme AiiB in <i>Priestia megaterium</i> Isolated from a Natural Environment4
Analysis of the Bacterial Flora of Substrates Used for the Cultivation of <i>Agaricus bisporus</i>: Relationship between <i>Clostridia</i> and Yield4
Isolation and Identification of Phosphate-solubilizing Bacteria in the Rhizosphere of <i>Robinia pseudoacacia</i> on the Loess Plateau and Verification of Phosphate Solubilization Capacity4
Identification of a Novel Gene Involved in Cell-to-cell Communication-induced Cell Death and eDNA Production in <i>Streptococcus mutans</i>4
Metabolic Potential and Microbial Diversity of Late Archean to Early Proterozoic Ocean Analog Hot Springs of Japan3
A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample3
Mating Types of <i>Ustilago esculenta</i> Infecting <i>Zizania latifolia</i> Cultivars in Japan Are Biased towards MAT-2 and MAT-33
Polyethylene Biodegradation by an Artificial Bacterial Consortium: <i>Rhodococcus</i> as a Competitive Plastisphere Species3
Effects of Co-existing Heterotrophs on Physiology of and Nitrogen Metabolism in Autotrophic Nitrite-oxidizing <i>Candidatus</i> Nitrotoga3
Ammonia Oxidation Property of Soils on the Glacier Foreland of Austre Brøggerbreen, Svalbard: Response to Open-top Chamber Experiments3
Screening of Nonpathogenic <i>Fusarium</i> Species Suppressing Fusarium Crown and Root Rot in Asparagus Using Wheat Bran as an Inoculum Carrier3
<i>Fusarium</i> Fungi Produce Nitrous Oxide (N<sub>2</sub>O) from Nitrite (NO<sub>2</sub><sup>–</sup>) in a Model Pot System Simulating the Soybean Rhiz3
Categorization of Bacteria That Leak from Activated Sludge to Secondary Treated Water: Year-round Observations3
Deep Subseafloor Biogeochemical Processes and Microbial Populations Potentially Associated with the 2011 Tohoku-oki Earthquake at the Japan Trench Accretionary Wedge (IODP Expedition 343)3
Promoter Sequences Do Not Solely Govern <i>nosZ</i> Expression Differences between <i>Bradyrhizobium ottawaense</i> and <i>B. diazoefficiens</i>2
Application of Genomic Epidemiology of Pathogens to Farmed Yellowtail Fish Mycobacteriosis in Kyushu, Japan2
Impact of Inoculations with Indigenous <i>Bradyrhizobium diazoefficiens</i> Isolates on Productivity and Competition with Indigenous Bradyrhizobia in Adzuki Bean (<i>Vigna angularis&2
Relationship Between Rumen Microbial Composition and Fibrolytic Isozyme Activity During the Biodegradation of Rice Straw Powder Using Rumen Fluid2
Effects of Soil Moisture Content and <i>Rj</i> Genotype Differences on Soybean Productivity and Soybean-nodulating Bradyrhizobial Occupancy2
A Simple and Effective Method for Solid Medium Cultivation of Strictly Hydrogen- and Sulfur-oxidizing Chemolithoautotrophs Predominant in Deep-‍sea Hydrothermal Fields2
Gamma Ray-induced Mutations in <i>pyrEF</i> Genes in <i>Frankia casuarinae</i> Strain CcI32
Screening of <i>Bradyrhizobium ottawaense</i> with High N<sub>2</sub>O-reducing Activity from Soybean Nodules in Japan2
Isolation and Genomic Characterization of a Novel Japanese Strain of <i>Pseudomonas protegens</i> and an Evaluation of Its Biocontrol Potential2
Microbiome Associated with <i>Polypedilum</i> sp. (Diptera; Chironomidae), a Midge Adapted to an Extremely Acidic Environment2
Microbial Community Structure of Mesophilic and Low-temperature Partial Nitrification-anammox Reactors: Distribution and Functional Roles of the Core Microbiome2
Current Understanding of Taxonomy and Ecology of the Phylum <i>Minisyncoccota</i>2
Distinct and Intermediate Bacterial Community Structure of the Wasabi Rhizome Based on Compartment-resolved 16S rRNA Gene Profiling1
Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox Biofilm Fed with Nitrous Oxide1
Isolation of a <i>Tissierellaceae</i> Bacterium Exhibiting a High Reduction Potential for Insoluble Indigo Dyes1
Characterization of <i>Frankia casuarinae</i> Mutants Defective in Vesicle Envelope Development1
Metagenomic Insights into Ecophysiology of <i>Zetaproteobacteria</i> and <i>Gammaproteobacteria</i> in Shallow Zones within Deep-sea Massive Sulfide Deposits1
Formation of Biogenic Manganese Oxide Nodules on Hyphae of a New Fungal Isolate of <i>Periconia</i> That Immobilizes Aqueous Copper1
Genome Plasticity Depends on Positions both Inside and Outside of the Symbiosis Island of <i>Bradyrhizobium diazoefficiens</i>1
DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics1
Novel Insights into Microbial Behavior Gleaned Using Microfluidics1
The Discovery of Membrane Vesicle Biogenesis in the Polyhydroxybutyrate-non-producing Mutant Strain of <i>Cupriavidus necator</i> H161
Kinetics of Nitrous Oxide (N<sub>2</sub>O)-reducing Activity of <i>Bradyrhizobium ottawaense</i> by an Automated Analysis1
Reactive Sulfur Species Produced by Cystathionine γ-lyase Function in the Establishment of <i>Mesorhizobium loti</i>–<i>Lotus japonicus</i> Symbiosis1
Successful Isolation of Diverse <i>Verrucomicrobiota</i> Strains through the Duckweed-Microbes Co-cultivation Method1
Ferrihydrite Addition Activated <i>Geobacteraceae</i>, the Most Abundant Iron-reducing Diazotrophs, and Suppressed Methanogenesis by Heterogeneous Methanogens in Xylan-amended Paddy Soil M1
A Novel Strain of the Cyanobacterial Growth-promoting Bacterium, <i>Rhodococcus</i> sp. AF2108, Enhances the Growth of <i>Synechococcus elongatus</i>1
Marked Genome Reduction Driven by a Parasitic Lifestyle: Two Complete Genomes of Endosymbiotic Bacteria Possibly Hosted by a Dinoflagellate1
Isolation of a Moderately Acidophilic <i>Nitrobacter</i> from a Nitrifying Community Supplied with Urea1
Community Structure and Predicted Functions of Actively Growing Bacteria Responsive to Released Coral Mucus in Surrounding Seawater1
The Type III Effector NopM from <i>Bradyrhizobium elkanii</i> USDA61 Induces a Hypersensitive Response in <i>Lotus japonicus</i> Root Nodules1
Does Rhizobial Inoculation Change the Microbial Community in Field Soils? A‍ ‍Comparison with Agricultural Land-use Changes1
Unipolar Polysaccharide-mediated Attachment of the N<sub>2</sub>O-reducing bacterium <i>Bradyrhizobium ottawaense</i> SG09 to Plant Roots1
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