Microbes and Environments

Papers
(The median citation count of Microbes and Environments is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-10-01 to 2024-10-01.)
ArticleCitations
Community Analysis-based Screening of Plant Growth-promoting Bacteria for Sugar Beet24
Metabolic Potential of the Superphylum <i>Patescibacteria</i> Reconstructed from Activated Sludge Samples from a Municipal Wastewater Treatment Plant22
Soil Sample Preservation Strategy Affects the Microbial Community Structure21
RNA Viral Metagenome Analysis of Subnanogram dsRNA Using Fragmented and Primer Ligated dsRNA Sequencing (FLDS)20
N<sub>2</sub>O Reduction by <i>Gemmatimonas aurantiaca</i> and Potential Involvement of <i>Gemmatimonadetes</i> Bacteria in N<sub>2</sub>O Reduction in 18
Population Distribution of Phosphate-solubilizing Microorganisms in Agricultural Soil18
Dynamics of the Microbial Community and Opportunistic Pathogens after Water Stagnation in the Premise Plumbing of a Building17
Intercontinental Diversity of <i>Caballeronia</i> Gut Symbionts in the Conifer Pest Bug <i>Leptoglossus occidentalis</i>15
Nitrogen-fixing Ability and Nitrogen Fixation-related Genes of Thermophilic Fermentative Bacteria in the Genus <i>Caldicellulosiruptor</i>14
Ecogenomics Reveals Microbial Metabolic Networks in a Psychrophilic Methanogenic Bioreactor Treating Soy Sauce Production Wastewater12
Diversity and Composition of Microbial Communities in an Eelgrass (<i>Zostera marina</i>) Bed in Tokyo Bay, Japan11
Multiplex LAMP Detection of the Genus <i>Phytophthora</i> and Four <i>Phytophthora</i> Species <i>P. ramorum</i>, <i>P. lateralis</i>, <i>P. kerno11
Eukaryotic Microbial RNA Viruses—Acute or Persistent? Insights into Their Function in the Aquatic Ecosystem10
Phenolic Acids Induce Nod Factor Production in <i>Lotus japonicus</i>–<i>Mesorhizobium</i> Symbiosis10
NeoRdRp: A Comprehensive Dataset for Identifying RNA-dependent RNA Polymerases of Various RNA Viruses from Metatranscriptomic Data10
Bioelectrical Methane Production with an Ammonium Oxidative Reaction under the No Organic Substance Condition10
High-resolution Microbiome Analyses of Nine Psyllid Species of the Family Triozidae Identified Previously Unrecognized but Major Bacterial Populations, including <i>Liberibacter</i> and &l10
Metagenomic Analysis of Five Phylogenetically Distant Anammox Bacterial Enrichment Cultures9
Antarctic Hairgrass Rhizosphere Microbiomes: Microscale Effects Shape Diversity, Structure, and Function9
The <i>Thermosynechococcus</i> Genus: Wide Environmental Distribution, but a Highly Conserved Genomic Core9
Insights into Antifungal Mechanisms of <i>Bacillus velezensis</i> S141 against <i>Cercospora</i> Leaf Spot in Mungbean (<i>V. radiata</i>)9
Dysbiosis in the Salivary Microbiome Associated with IgA Nephropathy—‍A‍ ‍Japanese Cohort Study8
Isolation and Characterization of Phosphate Solubilizing Bacteria from Paddy Field Soils in Japan8
<i>Lysinibacillus xylanilyticus</i> Strain GIC41 as a Potential Plant Biostimulant8
Phage Genes Induce Quorum Sensing Signal Release through Membrane Vesicle Formation8
Seasonal Shifts in Bacterial Community Structures in the Lateral Root of Sugar Beet Grown in an Andosol Field in Japan8
Identification of New <i>Halomonas</i> Strains from Food-related Environments8
Diversity of <i>Candidatus</i> Patescibacteria in Activated Sludge Revealed by a Size-‍Fractionation Approach7
Growth Rate-dependent Cell Death of Diatoms due to Viral Infection and Their Subsequent Coexistence in a Semi-continuous Culture System6
Multiple Gene Clusters and Their Role in the Degradation of Chlorophenoxyacetic Acids in <i>Bradyrhizobium</i> sp. RD5-C2 Isolated from Non-Contaminated Soil6
Inoculation of <i>Mimosa Pudica</i> with <i>Paraburkholderia phymatum</i> Results in Changes to the Rhizoplane Microbial Community Structure6
Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms6
Characterization and Distribution of Agar-degrading <i>Steroidobacter agaridevorans</i> sp. nov., Isolated from Rhizosphere Soils6
16S rRNA Gene Sequencing of Six Psyllid Species of the Family Carsidaridae Identified Various Bacteria Including <i>Symbiopectobacterium</i>5
Identification of Aerotaxis Receptor Proteins Involved in Host Plant Infection by <i>Pseudomonas syringae</i> pv. <i>tabaci</i> 66055
Diversity of Lactic Acid Bacteria Involved in the Fermentation of Awa-bancha5
Bacterial Dynamics in the Accessory Nidamental Gland of <i>Sepioteuthis lessoniana</i> throughout Maturation5
Microbial Community Structures and Methanogenic Functions in Wetland Peat Soils5
Novel Cross-domain Symbiosis between <i>Candidatus</i> Patescibacteria and Hydrogenotrophic Methanogenic Archaea <i>Methanospirillum</i> Discovered in a Methanogenic Ecosystem5
Simultaneous Nitrogen Removal and Plant Growth Promotion Using Salt-‍tolerant Denitrifying Bacteria in Agricultural Wastewater5
Occurrence and Diversity of <i>Listeria monocytogenes</i> Isolated from Two Pig Manure Treatment Plants in France5
Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales5
RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific4
Characterization of Lactic Acid Bacteria from Fermented Fish (<i>pla-paeng-daeng</i>) and Their Cholesterol-lowering and Immunomodulatory Effects4
Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan4
Utilizing Cattle Manure Compost Increases Ammonia Monooxygenase A Gene Expression and Ammonia-oxidizing Activity of Both Bacteria and Archaea in Biofiltration Media for Ammonia Deodorization4
Complex History of Aerobic Respiration and Phototrophy in the <i>Chloroflexota</i> Class <i>Anaerolineae</i> Revealed by High-Quality Draft Genome of <i>Ca.</i> Ros4
Diversity in Infection Specificity between the Bloom-forming Microalga <i>Heterosigma akashiwo</i> and Its dsDNA Virus, Heterosigma akashiwo Virus4
Structural Comparison of Diplonemid Communities around the Izu Peninsula, Japan4
Bacterial Community of Water Yam (<i>Dioscorea alata</i> L.) cv. A-194
The First Identification of a Narnavirus in Bigyra, a Marine Protist4
Fungal Carbonyl Sulfide Hydrolase of <i>Trichoderma harzianum</i> Strain THIF08 and Its Relationship with Clade D β-Carbonic Anhydrases4
Nitrogen Deficiency-induced Bacterial Community Shifts in Soybean Roots4
Improvements in Extraction Methods of High-molecular-weight DNA from Soils by Modifying Cell Lysis Conditions and Reducing Adsorption of DNA onto Soil Particles4
Optimized Cultivation and Syntrophic Relationship of Anaerobic Benzene-Degrading Enrichment Cultures under Methanogenic Conditions4
Unique Rhizobial Communities Dominated by <i>Bradyrhizobium liaoningense</i> and <i>Bradyrhizobium ottawaense</i> were Found in Vegetable Soybean Nodules in Osaka Prefecture, J4
<i>Marseilleviridae</i> Lineage B Diversity and Bunch Formation Inhibited by Galactose4
Author’s correction: Characterization and Distribution of Agar-degrading <i>Steroidobacter agaridevorans</i> sp. nov., Isolated from Rhizosphere Soils3
Environmental Factors Affecting the Community of Methane-oxidizing Bacteria3
Mitigation of Paddy Field Soil Methane Emissions by Betaproteobacterium <i>Azoarcus</i> Inoculation of Rice Seeds3
A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample3
Plant Growth-promoting Effects of Viable and Dead Spores of <i>Bacillus pumilus</i> TUAT1 on <i>Setaria viridis</i>3
Simple In-liquid Staining of Microbial Cells for Flow Cytometry Quantification of the Microbial Population in Marine Subseafloor Sediments3
Identification of a Novel Gene Involved in Cell-to-cell Communication-induced Cell Death and eDNA Production in <i>Streptococcus mutans</i>2
Effects of Phosphate-solubilizing Bacteria on Soil Phosphorus Fractions and Supply to Maize Seedlings Grown in Lateritic Red Earths and Cinnamon Soils2
Induction of Extracellular Aminopeptidase Production by Peptides in Some Marine Bacterial Species2
Environmental Variables Including Heavy Metals Significantly Shape the Soil Bacterial Community Structure in the Tatun Volcano Group, Northern Taiwan2
Identification of Feline Foamy Virus-derived MicroRNAs2
Metagenome-assembled Genomes of Six Novel Ammonia-oxidizing Archaea (AOA) from Agricultural Upland Soil2
Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox Biofilm Fed with Nitrous Oxide2
Community Structure and Predicted Functions of Actively Growing Bacteria Responsive to Released Coral Mucus in Surrounding Seawater2
DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics2
Symbiosis Contribution of Non-nodulating <i>Bradyrhizobium cosmicum</i> S23321 after Transferal of the Symbiotic Plasmid pDOA92
Exogenous Indole-3-Acetic Acid Induced Ethanol Tolerance in Phylogenetically Diverse Saccharomycetales Yeasts2
Raman Micro­spectroscopy and Imaging of Filamentous Fungi2
Endpoint Recombinase Polymerase Amplification (RPA) Assay for Enumeration of Thiocyanate-degrading Bacteria2
Changes in ATP Sulfurylase Activity in Response to Altered Cyanobacteria Growth Conditions2
Ultrastructure of the <i>Mycobacterium avium</i> subsp. <i>hominissuis</i> Biofilm2
Putative Invertebrate, Plant, and Wastewater Derived ssRNA Viruses in Plankton of the Anthropogenically Impacted Anacostia River, District of Columbia, USA2
Detection and Characterization of RNA Viruses in Red Macroalgae (Bangiaceae) and Their Food Product (Nori Sheets)2
Genetic Diversity and Characterization of Symbiotic Bacteria Isolated from Endemic <i>Phaseolus</i> Cultivars Located in Contrasting Agroecosystems in Venezuela2
Slight Changes in the Gut Microbiome in Early-stage Chronic Kidney Disease of Unknown Etiology2
Mating Types of <i>Ustilago esculenta</i> Infecting <i>Zizania latifolia</i> Cultivars in Japan Are Biased towards MAT-2 and MAT-32
Layers of Uranium Phosphate Nanorods and Nanoplates Encrusted on Fungus <i>Cladosporium</i> sp. Strain F1 Hyphae2
Diversity and Quantitative Detection of Clade I Type <i>nosZ</i> Denitrifiers in the Arabian Sea Oxygen Minimum Zone2
Degenerate PCR Targeting the Major Capsid Protein Gene of HcRNAV and Related Viruses2
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