OOIR: Observatory of International Research

Papers

(The median citation count of Plant Biotechnology is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-10-01 to 2024-10-01.)

Article	Citations
Transient protein expression systems in plants and their applications	33
Molecular basis of cytoplasmic male sterility and fertility restoration in rice	29
Creation of a potato mutant lacking the starch branching enzyme gene <i>StSBE3</i> that was generated by genome editing using the CRISPR/dMac3-Cas9 system	21
Two aquaporins, SIP1;1 and PIP1;2, mediate water transport for pollen hydration in the <i>Arabidopsis</i> pistil	20
An in vitro grafting method to quantify mechanical forces of adhering tissues	12
Visualization of Toyoura sand-grown plant roots by X-ray computer tomography	11
3-Phenyllactic acid, a root-promoting substance isolated from Bokashi fertilizer, exhibits synergistic effects with tryptophan	10
Enhancement of shoot regeneration by treatment with inhibitors of auxin biosynthesis and transport during callus induction in tissue culture of <i>Arabidopsis thaliana</i>	10
<i>Trans</i>-species small RNAs move long distances in a parasitic plant complex	9
Additional betalain accumulation by genetic engineering leads to a novel flower color in lisianthus (<i>Eustoma grandiflorum</i>)	9
Correlation between seed longevity and RNA integrity in the embryos of rice seeds	9
Exogenous ethanol treatment alleviates oxidative damage of <i>Arabidopsis thaliana</i> under conditions of high-light stress	9
Efficient genome editing and gene knockout in <i>Setaria viridis</i> with CRISPR/Cas9 directed gene editing by the non-homologous end-joining pathway	9
Identification of genes involved in <i>Meloidogyne incognita</i>-induced gall formation processes in <i>Arabidopsis thaliana</i>	8
OsCERK2/OsRLK10, a homolog of OsCERK1, has a potential role for chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice	8
Efficient <i>Agrobacterium</i>-mediated genetic transformation method using hypocotyl explants of radish (<i>Raphanus sativus</i> L.)	8
Characterization of 5-<i>O</i>-glucosyltransferase involved in anthocyanin biosynthesis in <i>Cyclamen purpurascens</i>	8
Novel assays to monitor gene expression and protein-protein interactions in rice using the bioluminescent protein, NanoLuc	8
A multimodal metabolomics approach using imaging mass spectrometry and liquid chromatography-tandem mass spectrometry for spatially characterizing monoterpene indole alkaloids secreted from roots	8
A glycogen synthase kinase 3-like kinase MpGSK regulates cell differentiation in <i>Marchantia polymorpha</i>	8
Recent advances in steroidal glycoalkaloid biosynthesis in the genus <i>Solanum</i>	7
MassBase: A large-scaled depository of mass spectrometry datasets for metabolome analysis	7
The boundary-expressed <i>EPIDERMAL PATTERNING FACTOR-LIKE2</i> gene encoding a signaling peptide promotes cotyledon growth during <i>Arabidopsis thaliana</i> embryogenesis	7
Micromanipulation of amyloplasts with optical tweezers in <i>Arabidopsis</i> stems	7
Competitive action between Brassinosteroid and tracheary element differentiation inhibitory factor in controlling xylem cell differentiation	7

Inactivation of plant and animal viruses by proanthocyanidins from <i>Alpinia zerumbet</i> extract	6
Database mining of plant peptide homologues	6
An Arabidopsis NAC domain transcriptional activator VND7 negatively regulates <i>VNI2</i> expression	6
Structural features conserved in subclass of type II arabinogalactan	6
Estimating the flexural rigidity of Arabidopsis inflorescence stems: Free-vibration test vs. three-point bending test	6
Spatial metabolomics using imaging mass spectrometry to identify the localization of asparaptine A in <i>Asparagus officinalis</i>	6
Nucleoside derivatives of 5-methylcytosine suppress 5-azacytidine-induced reactivation of a silent transgene in suspension-cultured tobacco cells	5
Induction of dwarf and early flowering phenotypes in <i>Tricyrtis</i> sp. by ectopic expression of <i>LEAFY</i> from <i>Arabidopsis thaliana</i>	5
Comparison of constitutive promoter activities and development of maize <i>ubiquitin</i> promoter- and Gateway-based binary vectors for rice	5
Comparative analysis of various root active promoters by evaluation of GUS expression in transgenic Arabidopsis	5
A simple method for <i>in planta</i> tomato transformation by inoculating floral buds with a sticky <i>Agrobacterium tumefaciens</i> suspension	5
Four-dimensional imaging with virtual reality to quantitatively explore jigsaw puzzle-like morphogenesis of <i>Arabidopsis</i> cotyledon pavement cells	5
4-Phenylbutyric acid promotes plant regeneration as an auxin by being converted to phenylacetic acid via an IBR3-independent pathway	5
Root shape adaptation to mechanical stress derived from unidirectional vibrations in <i>Populus nigra</i>	5
Procedure for the efficient acquisition of progeny seeds from crossed potato plants grafted onto tomato	5
CRISPR/Cas9-mediated disruption of <i>ALLENE OXIDE SYNTHASE</i> results in defective 12-oxo-phytodienoic acid accumulation and reduced defense against spider mite (<i>Tetranychus urt	5
Effect of enhanced CaCl<sub>2</sub>, MgSO<sub>4</sub>, and KH<sub>2</sub>PO<sub>4</sub> on improved in vitro growth of potato	5
New insights into the intraspecific cytoplasmic DNA diversity, maternal lineages classification and conservation issues of Tunisian pearl millet landraces	5
Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress	5
Brassinosteroids are required for efficient root tip regeneration in <i>Arabidopsis</i>	5
Migration of prospindle before the first asymmetric division in germinating spore of <i>Marchantia polymorpha</i>	4
In situ measurement of cell stiffness of Arabidopsis roots growing on a glass micropillar support by atomic force microscopy	4
Integrated transcript and metabolite profiling reveals coordination between biomass size and nitrogen metabolism in <i>Arabidopsis</i> F<sub>1</sub> hybrids	4
Evaluation of pollen tube growth ability in <i>Petunia</i> species having different style lengths	4
Identification of two tobacco genes encoding MYB3R proteins with repressor function and showing cell cycle-regulated transcript accumulation	4
Expression of the auxin biosynthetic genes <i>YUCCA1</i> and <i>YUCCA4</i> is dependent on the boundary regulators <i>CUP-SHAPED COTYLEDON</i> genes in the <i>	4
Trigalactosyldiacylglycerol 3 protein orthologs are required for basal disease resistance in <i>Nicotiana benthamiana</i>	4
Analysis of <i>N</i>-glycan profile of Arabidopsis <i>alg3</i> cell culture	4
Efficient double-flowered gentian plant production using the CRISPR/Cas9 system	4
Calcium signaling contributes to xylem vessel cell differentiation via post-transcriptional regulation of VND7 downstream events	4
Efficiency of potato genome editing: Targeted mutation on the genes involved in starch biosynthesis using the CRISPR/dMac3-Cas9 system	4
Peculiar properties of tuber starch in a potato mutant lacking the α-glucan water dikinase 1 gene <i>GWD1</i> created by targeted mutagenesis using the CRISPR/dMac3-Cas9 system	4
Mutation of cysteine residues increases heterologous expression of peach expansin in the methylotrophic yeast <i>Pichia pastoris</i>	4
Spatio-temporal kinematic analysis of shoot gravitropism in <i>Arabidopsis thaliana</i>	4
Establishment of a genetic transformation system for <i>Codonopsis pilosula</i> callus	4
Fertile <i>Arabidopsis cyp704b1</i> mutant, defective in sporopollenin biosynthesis, has a normal pollen coat and lipidic organelles in the tapetum	4
Conjugates of 3-phenyllactic acid and tryptophan enhance root-promoting activity without adverse effects in <i>Vigna angularis</i>	3
Role of GSL8 in low calcium tolerance in <i>Arabidopsis thaliana</i>	3
Effects of mitochondria-selective fluorescent probes on mitochondrial movement in <i>Arabidopsis</i> mesophyll cells evaluated by using the quantification	3
In vitro acclimatization of <i>Curcuma longa</i> under controlled <i>iso</i>-osmotic conditions	3
Modulation of wheat grain dormancy by introducing the recombinant abscisic acid-stimulated abscisic acid biosynthesis gene	3
Transformation of <i>Jatropha curcas</i> L. for production of larger seeds and increased amount of biodiesel	3
The simple and rapid quantification method for L-3,4-dihydroxyphenylalanine (L-DOPA) from plant sprout using liquid chromatography-mass spectrometry	3
<i>Mesorhizobium</i> sp. J8 can establish symbiosis with <i>Glycyrrhiza uralensis</i>, increasing glycyrrhizin production	3
In vitro propagation from axillary buds of the endangered tree <i>Dalbergia congestiflora</i> Pittier (Fabaceae)	3
Recent advances in the improvement of soybean seed traits by genome editing	3
Environmental risk assessment of transgenic miraculin-accumulating tomato in a confined field trial in Japan	3
Characterization of UDP-glucose dehydrogenase isoforms in the medicinal legume <i>Glycyrrhiza uralensis</i>	3
Illuminating the molecular mechanisms underlying shoot apical meristem homeostasis in plants	3
Fluorescence from abnormally sterile pollen of the Japanese apricot	3

Arabidopsis homeobox-leucine zipper transcription factor BRASSINOSTEROID-RELATED HOMEOBOX 3 regulates leaf greenness by suppressing BR signaling	2
Preculture in an enriched nutrient medium greatly enhances the <i>Agrobacterium</i>-mediated transformation efficiency in <i>Arabidopsis</i> T87 cultured cells	2
Evolution of root nodule symbiosis: Focusing on the transcriptional regulation from the genomic point of view	2
Transgenic rice plants expressing the α-L-arabinofuranosidase of <i>Coprinopsis cinerea</i> exhibit strong dwarfism and markedly enhanced tillering	2
Integrated gene-free potato genome editing using transient transcription activator-like effector nucleases and regeneration-promoting gene expression by <i>Agrobacterium</i> infection	2
Temperature-controlled atmospheric-pressure plasma treatment induces protein uptake via clathrin-mediated endocytosis in tobacco cells	2
Construction of transgenic <i>Ipomoea obscura</i> that exhibits new reddish leaf and flower colors due to introduction of β-carotene ketolase and hydroxylase genes	2
Comprehensive effects of heavy-ion beam irradiation on sweet potato (<i>Ipomoea batatas</i> [L.] Lam.)	2
Pericycle cell division competence underlies various developmental programs	2
Lettuce-based production of an oral vaccine against porcine edema disease for the seed lot system	2
Oxicam-type nonsteroidal anti-inflammatory drugs enhance <i>Agrobacterium</i>-mediated transient transformation in plants	2
RNA-seq study reveals the signaling and carbohydrate metabolism regulators involved in dormancy release by warm stratification in <i>Paris polyphylla</i> var. <i>yunnanensis</i>	2
Abscisic acid switches cell division modes of asymmetric cell division and symmetric cell division in stem cells of protonemal filaments in the moss <i>Physcomitrium patens</i>	2
A novel petal up-regulated <i>PhXTH7</i> promoter analysis in <i>Petunia hybrida</i> by using bioluminescence reporter gene	2
Introduction of a long synthetic repetitive DNA sequence into cultured tobacco cells	2
Preface to the special issue “Current Status and Future Prospects for the Development of Crop Varieties and Breeding Materials Using Genome Editing Technology”	2
3-Phenyllactic acid is converted to phenylacetic acid and induces auxin-responsive root growth in Arabidopsis plants	2
Hyperosmotic stress-induced somatic embryogenesis and its continuous culture in Japanese honewort (<i>Cryptotaenia japonica</i>)	2
Genome editing and molecular analyses of an <i>Arabidopsis</i> transcription factor, LATE FLOWERING	2
Complementation of the tomato <i>HWS</i> gene with its Arabidopsis counterpart demonstrates conservation of the gene function between both species	2
Isopropylmalate synthase <i>NtIPMS</i> as a potential molecular marker for seed vigor in tobacco	2
IRE1-mediated cytoplasmic splicing and regulated IRE1-dependent decay of mRNA in the liverwort <i>Marchantia polymorpha</i>	2
Development of selection method for <i>Glycyrrhiza uralensis</i> superior clones with high-glycyrrhizic acid contents using DNA sequence polymorphisms in glycyrrhizic acid biosynthetic gen	2
The accumulation of recombinant miraculin is independent of fruit size in tomato	2
NaCl dependent production of coniferin in <i>Alluaudiopsis marnieriana</i> suspension cultured cells	2
THESEUS1 is involved in tunicamycin-induced root growth inhibition, ectopic lignin deposition, and cell wall damage-induced unfolded protein response	2
Arabidopsis zinc finger homeodomain transcription factor BRASSINOSTEROID-RELATED HOMEOBOX 2 acts as a positive regulator of brassinosteroid response	2
Allelopathic activities of three carotenoids, neoxanthin, crocin and β-carotene, assayed using protoplast co-culture method with digital image analysis	2
Expression of soybean plant hemoglobin gene family under abiotic stresses	2
VND-INTERACTING2 effectively inhibits transcriptional activities of VASCULAR-RELATED NAC-DOMAIN7 through a conserved sequence	2
Optimisation of a rapid and efficient transformation protocol for fungal blast-susceptible indica rice cultivars HR-12 and CO-39	2
Site-directed mutagenesis of soybean <i>PEAPOD</i> genes using the CRISPR/Cas9 system alters tissue developmental transition	2
Characterization of γ-glutamyltransferase- and phytochelatin synthase-mediated catabolism of glutathione and glutathione <i>S</i>-conjugates in <i>Arabidopsis thaliana</i>	2
In vitro selection of blackberry (<i>Rubus fruticosus</i> ‘Tupy’) plants resistant to <i>Botrytis cinerea</i> using gamma ray-irradiated shoot tips	1
Influence of osmotic condition on secondary cell wall formation of xylem vessel cells induced by the master transcription factor VND7	1
Expressing recombinant human lactoferrin with antibacterial activity in <i>Nicotiana benthamiana</i>	1
Variety-dependent accumulation of glucomannan in the starchy endosperm and aleurone cell walls of rice grains and its possible genetic basis	1
Upstream open reading frame-mediated upregulation of ANAC082 expression in response to nucleolar stress in Arabidopsis	1
Exogenous treatment with N-acetylglutamic acid confers tolerance to heat stress in plants	1
Mechanical measurement of gravitropic bending force in pea sprouts	1
A RING membrane-anchor E3 ubiquitin ligase gene is co-expressed with steroidal glycoalkaloid biosynthesis genes in tomato	1
Laser micromarking technique in studying the negative gravitropism in pea stem	1
Development of a dynamic imaging method for gravitropism in pea sprouts using clinical magnetic resonance imaging system	1
Selection of a histidine auxotrophic <i>Marchantia polymorpha</i> strain with an auxotrophic selective marker	1
Culture-based preservation of <i>Marchantia polymorpha</i> gemmalings and thalli without encapsulation, drying, or freezing	1
Measurement of reactive oxygen species production by luminol-based assay in <i>Nicotiana benthamiana</i>, <i>Arabidopsis thaliana</i> and <i>Brassica rapa</i> ssp.	1
Downregulation of a cluster of genes encoding nitrate transporter 1/peptide transporter family proteins in tomato with a mutated JRE4 transcription factor	1
Development of an efficient <i>Agrobacterium</i>-mediated transformation method and its application in tryptophan pathway modification in <i>Catharanthus roseus</i>	1
A rapid method for detection of the root-knot nematode resistance gene, <i>Mi-1.2</i>, in tomato cultivars	1
Comprehensive identification of terpene synthase genes and organ-dependent accumulation of terpenoid volatiles in a traditional medicinal plant <i>Angelica archangelica</i> L.	1
Preface to the special issue “Approaches for strategies of mechanical optimization in plants”	1
Synthetic-biology approach for plant lignocellulose engineering	1
Early flowering phenotype of the Arabidopsis <i>altered meristem program1</i> mutant is dependent on the FLOWERING LOCUS T-mediated pathway	1
The mitochondrial and plastid genomes of <i>Oryza sativa</i> L. cv. Taichung 65	1
Induction of adventitious shoots and tetraploids in <i>Antirrhinum majus</i> L. by treatment of antimitotic agents in vitro without plant growth regulators	1
Application of plant specialized metabolites to modulate soil microbiota	1
Development of an inducible excision system of a visual marker <i>Ipomoea batatas Myb</i> gene from the genome of transgenic cells	1
Optimizing genome editing efficiency in wheat: Effects of heat treatments and different promoters for single guide RNA expression	1
Excision of DNA fragments with the <i>piggyBac</i> system in <i>Chrysanthemum morifolium</i>	1
Intergeneric hybridization of marguerite (<i>Argyranthemum frutescens</i> (L.) Sch. Bip.) and Roman chamomile (<i>Chamaemelum nobile</i> (L.) All.) using ovule culture and conf	1
ADP-glucose pyrophosphorylase genes are differentially regulated in sugar-dependent or -independent manners in tomato (<i>Solanum lycopersicum</i> L.) fruit	1
Ribosome biogenesis factor OLI2 and its interactor BRX1-2 are associated with morphogenesis and lifespan extension in <i>Arabidopsis thaliana</i>	1
The influences of fungal endophytes inoculation on the biochemical status of grape cells of different varieties in vitro	1
Metabolic diversity analysis and genome wide assessment of oxalate accumulation in the leaves of rice (<i>Oryza sativa</i>) cultivars	1