OOIR: Observatory of International Research

Papers

(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar ‘Fielder’	98
Chromosome-scale genome assembly of Japanese pear (Pyrus pyrifolia) variety ‘Nijisseiki’	35
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)	27
Understanding small ORF diversity through a comprehensive transcription feature classification	24
The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breat	24
A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster	20
Environmental DNA analysis for macro-organisms: species distribution and more	19
The Crown Pearl: a draft genome assembly of the European freshwater pearl musselMargaritifera margaritifera(Linnaeus, 1758)	19
Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron	17
Improved assembly and annotation of the sesame genome	16
Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney	16
A chromosome-level genome assembly of an alpine plant Crucihimalaya lasiocarpa provides insights into high-altitude adaptation	16
Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations	15
Chromosome-level genome assembly of Gynostemma pentaphyllum provides insights into gypenoside biosynthesis	15
Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense	15
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade	15
Integrating a genome-wide association study with transcriptomic data to predict candidate genes and favourable haplotypes influencing Brassica napus seed phytate	15
Genome-wide simple sequence repeat markers in potato: abundance, distribution, composition, and polymorphism	14
Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids	14
Reorganization of chromatin architecture during prenatal development of porcine skeletal muscle	13
A high-quality chromosome-level genome of wild Rosa rugosa	13
Transcriptomes and DNA methylomes in apomictic cells delineate nucellar embryogenesis initiation in citrus	13
The chromosome-level genome assembly of Gentiana dahurica (Gentianaceae) provides insights into gentiopicroside biosynthesis	13
MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.)	13
De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids	12

A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan	12
A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits	12
High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L	12
Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads	12
De novowhole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’	11
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae	11
Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics	11
Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)	11
Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis	10
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau	9
Chromosome-level genome assembly of the aquatic plant Nymphoides indica reveals transposable element bursts and NBS-LRR gene family expansion shedding light on its invasiveness	9
Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum ‘Takanotsume’	9
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets	7
Genome analysis of five recently described species of the CUG-Ser clade uncoversCandida theaeas a new hybrid lineage with pathogenic potential in theCandida parapsilosisspecies complex	7
Characterization and complexity of transcriptome inGymnocypris przewalskiiusing single-molecule long-read sequencing and RNA-seq	7
Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae; Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia	7
Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome	7
Genome-wide identification and characterization of Fur-binding sites in the cyanobacteria Synechocystis sp. PCC 6803 and PCC 6714	7
Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome	7
The genome of the Paleogene relic treeBretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs	6
Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community	6
The time is ripe to investigate human centromeres by long-read sequencing	6
Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’	6
Chromosome-scaleAmaranthus tricolorgenome provides insights into the evolution of the genusAmaranthusand the mechanism of betalain biosynthesis	6
Inventory of ATP-binding cassette proteins inLithospermum erythrorhizonas a model plant producing divergent secondary metabolites	5
Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants	5
Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species	5
Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons	5
A chromosome-level genome assembly of theHenosepilachna vigintioctomaculataprovides insights into the evolution of ladybird beetles	5
Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis	5
ZSCAN4-binding motif—TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes	5
A chromosome-scale genome and transcriptomic analysis of the endangered tropical treeVatica mangachapoi(Dipterocarpaceae)	5
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes	4
The complete mitogenome assemblies of 10 diploid potato clones reveal recombination and overlapping variants	4
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon	4
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)	4
Detection of tandem repeats in the Capsicum annuum genome	4
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma	4
The genome ofLyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes	3
Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies	3
Rapid transcriptomic and physiological changes in the freshwater pennate diatomMayamaea pseudoterrestrisin response to copper exposure	3
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome	3
Genome sequence and salinity adaptation of the desert shrub Nitraria sibirica (Nitrariaceae, Sapindales)	3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax	3