OOIR: Observatory of International Research

Papers

(The median citation count of DNA Research is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar ‘Fielder’	74
Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scaleLotus japonicusGifu genome sequence	33
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus	31
History and future perspectives of barley genomics	28
Chromosome-scale genome assembly of Japanese pear (Pyrus pyrifolia) variety ‘Nijisseiki’	27
Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error-removal process	26
Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named ‘Sakurajima Daikon’ possessing giant root	22
Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco	21
Understanding small ORF diversity through a comprehensive transcription feature classification	18
The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breat	16
Characterization of G-quadruplex antibody reveals differential specificity for G4 DNA forms	16
Environmental DNA analysis for macro-organisms: species distribution and more	15
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)	15
The genome sequence of tetraploid sweet basil, Ocimum basilicum L., provides tools for advanced genome editing and molecular breeding	15
The genotype-dependent phenotypic landscape of quinoa in salt tolerance and key growth traits	14
Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations	14
Integrating a genome-wide association study with transcriptomic data to predict candidate genes and favourable haplotypes influencing Brassica napus seed phytate	14
Genome sequencing of four culinary herbs reveals terpenoid genes underlying chemodiversity in the Nepetoideae	14
The Crown Pearl: a draft genome assembly of the European freshwater pearl musselMargaritifera margaritifera(Linnaeus, 1758)	14
Chromosome-level genome assembly of Gynostemma pentaphyllum provides insights into gypenoside biosynthesis	13
A chromosome-level genome assembly of an alpine plant Crucihimalaya lasiocarpa provides insights into high-altitude adaptation	13
Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron	13
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade	12
The chromosome-level genome assembly of Gentiana dahurica (Gentianaceae) provides insights into gentiopicroside biosynthesis	12
Improved assembly and annotation of the sesame genome	11

Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids	11
Transcriptomes and DNA methylomes in apomictic cells delineate nucellar embryogenesis initiation in citrus	11
Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney	10
Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense	10
A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits	10
High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L	10
De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids	10
A high-quality chromosome-level genome of wild Rosa rugosa	10
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae	10
Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera	10
Reorganization of chromatin architecture during prenatal development of porcine skeletal muscle	9
Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads	9
A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster	9
Existence and possible roles of independent non-CpG methylation in the mammalian brain	9
Genome assembly of Chiococca alba uncovers key enzymes involved in the biosynthesis of unusual terpenoids	9
Genome-wide simple sequence repeat markers in potato: abundance, distribution, composition, and polymorphism	9
Multiomics-based characterization of specialized metabolites biosynthesis in Cornus Officinalis	8
A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan	7
De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’	7
Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum ‘Takanotsume’	7
Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’	6
The genome of the Paleogene relic treeBretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs	5
Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)	5
Whole genome sequencing identifies allelic ratio distortion in sperm involving genes related to spermatogenesis in a swine model	5
The time is ripe to investigate human centromeres by long-read sequencing	5
MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.)	5
Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics	5
The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau	5
Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis	5
Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome	5
Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets	4
Genome analysis of five recently described species of the CUG-Ser clade uncoversCandida theaeas a new hybrid lineage with pathogenic potential in theCandida parapsilosisspecies complex	4
Chromosome-level genome assembly of the aquatic plant Nymphoides indica reveals transposable element bursts and NBS-LRR gene family expansion shedding light on its invasiveness	4
A chromosome-scale genome and transcriptomic analysis of the endangered tropical treeVatica mangachapoi(Dipterocarpaceae)	4
Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae; Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia	4
Evolutionary selection against short nucleotide sequences in viruses and their related hosts	4
Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis	3
Chromosome-level genome of a leaf vegetableGlebionis coronariaprovides insights into the biosynthesis of monoterpenoids contributing to its special aroma	3
Characterization and complexity of transcriptome in Gymnocypris przewalskii using single-molecule long-read sequencing and RNA-seq	3
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes	3
The highly conserved chromosomal periodicity of transcriptomes and the correlation of its amplitude with the growth rate in Escherichia coli	3
The complete mitogenome assemblies of 10 diploid potato clones reveal recombination and overlapping variants	3
Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons	3
Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome	3
A chromosomal-scale reference genome of the New World Screwworm,Cochliomyia hominivorax	3