Journal of Applied Genetics

Article	Citations
Strigolactone insensitivity affects differential shoot and root transcriptome in barley	26
Genetic and genomic characterization followed by single-step genomic evaluation of withers height in German Warmblood horses	22
Antibiotic resistance and its correlation with biofilm formation and virulence genes in Klebsiella pneumoniae isolated from wounds	18
In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM)	16
A simple and unified protocol to purify all seven Escherichia coli RNA polymerase sigma factors	16
Experimental and in silico analysis of LINC01279 expression in tumor of patients with breast cancer	14
Genetic diversity and selection signatures in sheep breeds	14
Genetic diversity and population structure of Uganda cassava germplasm	14
Circular RNA circ_0000119 promotes cervical cancer cell growth and migration via miR-433-3p/PAK2 axis	13
Complementarity of biomarker screening and genetic analyses based on the case of an attenuated multiple sulfatase deficiency	13
Genome-wide characterization of carotenoid oxygenase gene family in three cotton species and functional identification of GaNCED3 in drought and salt stress	12
Spinocerebellar ataxia 27B (SCA27B)—a systematic review and a case report of a Polish family	12
Commentary on “Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2”	12
Genetic analysis of novel resistance sources and genome-wide association mapping identified novel QTLs for resistance to Zymoseptoria tritici, the causal agent of septoria tritici blotch in wheat	12
Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074	12
MicroRNA in lung cancer—a novel potential way for early diagnosis and therapy	12
High expression of ACKR1 predicts a good prognosis and suppresses sarcoma cell progression via regulating the tumor immune microenvironment	11
Unjustly forgotten scientist Wacław Mayzel (1847–1916)—co-discoverer of somatic mitosis	11
Field response and molecular screening of European wheat germplasm against powdery mildew at the Himalayan region of Pakistan	11
Uncovering the role of aquaporin and chromobox family members as potential biomarkers in head and neck squamous cell carcinoma via integrative multiomics and in silico approach	11
Correction to: Diallel analysis of common bean (Phaseolus vulgaris L.) genotypes for seed dietary fibre, carbohydrate, calcium and phosphorus contents	11
Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	10
Identification of novel biallelic mutations in CFAP53 associated with fetal situs inversus totalis and literature review	9
Polymorphic insertions of DcSto miniature inverted-repeat transposable elements reveal genetic diversity structure within the cultivated carrot	9
Deciphering early responsive signature genes in rice blast disease: an integrated temporal transcriptomic study	9

Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active ba	9
Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis	9
Heritability of chronic thermal tolerance and genetic correlations with growth traits in the Pacific oyster (Crassostrea gigas)	9
Discrimination of hospital isolates of Acinetobacter baumannii using repeated sequences and whole genome alignment differential analysis	9
Association of ACE and AGTR1 variants with retinopathy of prematurity: a case–control study and meta-analysis	8
TGFα-EGFR pathway in breast carcinogenesis, association with WWOX expression and estrogen activation	8
Identifying key genes and functionally enriched pathways in acute myeloid leukemia by weighted gene co-expression network analysis	8
Up-regulated mRNA expression of VEGFA receptors (FLT1 and KDR) in placentas after assisted reproductive technology fertilization	8
Correction to: Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	7
Investigation of the biofilm formation in extra-intestinal pathogenic Escherichia coli ST131 strains and its correlation with the presence of fimH, afa, and kpsMSTII genes	7
Bioinformatics screening of prognostic immune-related genes in renal clear cell carcinoma	7
Genetic analysis of purple pigmentation in rice seed and vegetative parts — implications on developing high-yielding purple rice (Oryza sativa L.)	7
QTL mapping for adult plant resistance to wheat stripe rust in M96-5 × Guixie 3 wheat population	7
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet	7
Identification of potential biomarkers for melanoma cancer (black tumor) using bioinformatics strategy: a study based on GEO and SRA datasets	7
Exploring genomic inbreeding and selection signatures in a commercial Brangus herd through functional annotation	6
NADPH oxidase 4-mediating oxidative stress contributes to endometriosis	6
From cytogenetics to cytogenomics: a new era in the diagnosis of chromosomal abnormalities in domestic animals	6
Oat species and interspecific amphiploids show predominance of diploid nuclei in the syncytial endosperm	6
Variants of the CASP9 gene as candidate markers for primary response to anti-TNF therapy in Crohn’s disease patients	6
Comprehensive bioinformatics analysis reveals the oncogenic role of FoxM1 and its impact on prognosis, immune microenvironment, and drug sensitivity in osteosarcoma	6
What, how, and why? – anti-EHEC phages and their application potential in medicine and food industry	6
Rare T-box variants in adult pulmonary arterial hypertension with congenital heart disease	6
Correction to: Anthropometric characteristics of 65 Polish Smith-Lemli-Opitz patients	6
Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean	6
Single-cell integrated transcriptomics reveals the role of keratinocytes in head and neck squamous cell carcinoma	5
DNA ligase IV mutations confer shorter lifespan and increased sensitivity to nutrient stress in Drosophila melanogaster	5
Oligogenic risk score for Gilles de la Tourette syndrome reveals a genetic continuum of tic disorders	5
Giardia fibrillarin: a bioinformatics exploration of sequence and structure	5
Application of a custom NGS gene panel revealed a high diagnostic utility for molecular testing of hereditary ataxias	5
Identification of quantitative trait loci for in vitro plant regeneration from leaf microexplants in cucumber (Cucumis sativus L.)	5
Separating gene clustering in the rare mucopolysaccharidosis disease	5
Blood-based microRNA profiling unveils complex molecular dynamics in breast cancer	5
Bioinformatics to analyze the differentially expressed genes in different degrees of Alzheimer’s disease and their roles in progress of the disease	5
Epidemiology of Streptococcus pyogenes upper respiratory tract infections in Poland (2003–2017)	4
Development of novel gene-based markers for waxy1 gene and their validation for exploitation in molecular breeding for enhancement of amylopectin in maize	4
Discovery of genomic regions associated with resistance to late wilt disease caused by Harpophora maydis (Samra, Sabet and Hing) in maize (Zea mays L.)	4
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development	4
Review of applications of artificial intelligence (AI) methods in crop research	4
Application of OpenArray RT-qPCR for identification of microRNA expression signatures of lower extremity artery disease	4
Using machine learning and partial dependence to evaluate robustness of best linear unbiased prediction (BLUP) for phenotypic values	4
The mitogenomes characterization of two Peltigera species (Peltigera elisabethae and Peltigera polydactylon) and comparative mitogenomic analyses of six Peltigera	4
Genetic variation of Cerastium alpinum L. from Babia Góra, a critically endangered species in Poland	4
GGE biplot analysis for cane yield and sugar yield in advanced clones of sugarcane (Saccharum sp. complex)	4
Identification of eQTLs and differential gene expression associated with fetal programming in beef cattle	4
Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode	4
The genetic basis of cold tolerance in cucumber (Cucumis sativus L.)—the latest developments and perspectives	4
Integrative multiomics and weighted network approach reveals the prognostic role of RPS7 in lung squamous cell carcinoma pathogenesis	4
Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage	4
The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	4

Novel FOXP2 variant associated with speech and language dysfunction in a Chinese family and literature review	4
Urofacial (Ochoa) syndrome with a founder pathogenic variant in the HPSE2 gene: a case report and mutation origin	4
Effect of copper and silver ions on sequence and DNA methylation changes in triticale regenerants gained via somatic embryogenesis	4
Transcriptome profiling and metabolic pathway analysis towards reliable biomarker discovery in early-stage lung cancer	4
RNA-Seq transcriptome profiling of Nile rat livers reveals novel insights on the anti-diabetic mechanisms of Water-Soluble Palm Fruit Extract	4
Correction to: Unjustly forgotten scientist Wacław Mayzel (1847–1916)—co‑discoverer of somatic mitosis	3
Diversity of genome size, endopolyploidy and SCoT markers in 20 Trigonella (Fabaceae) species	3
Gene therapy as an innovative approach to the treatment of hemophilia B—a review	3
Exploring microRNA signatures in pediatric non-infectious uveitis: meta-analysis and molecular profiling of patient samples	3
ZNF26-Associated Genes as Prognostic Signatures in Colorectal Cancer with Broad Therapeutic Implications	3
Congenital coenzyme Q5-linked pathology: causal genetic association, core phenotype, and molecular mechanism	3
Discovery of core genes and intercellular communication role in osteosarcoma	3
Comparative transcriptome and adaptive evolution analysis on the main liver and attaching liver of Pareuchiloglanis macrotrema	3
Genomic Profiling Reveals Immune-Related Gene Differences in Lung Cancer Patients Stratified by PD1/PDL1 Expression: Implications for Immunotherapy Efficacy	3
FGFR3 and FGFR4 overexpression in juvenile nasopharyngeal angiofibroma: impact of smoking history and implications for personalized management	3
Long non-coding RNA variability in porcine skeletal muscle	3
QTL mapping of Fusarium ear rot resistance using genotyping by target sequencing (GBTS) in maize	3
Molecular identification of triticale introgression lines carrying leaf rust resistance genes transferred from Aegilops kotschyi Boiss. and Ae. tauschii Coss	3
Anthropogenic hybridization and its influence on the adaptive potential of the Sardinian wild boar (Sus scrofa meridionalis)	3
Correction to: Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	3
lncRNA MIAT promotes luminal B breast cancer cell proliferation, migration, and invasion in vitro	2
Comparative genome analysis of endophytic Bacillus amyloliquefaciens MR4: a potential biocontrol agent isolated from wild medicinal plant root tissue	2
Correction to: Featured lncRNA‑based signature for discriminating prognosis and progression of hepatocellular carcinoma	2
Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	2
Correction to: The analysis of transcriptomic signature of TNBC—searching for the potential RNA‑based predictive biomarkers to determine the chemotherapy sensitivity	2
Evaluation of the taxonomic classification tools and visualizers for metagenomic analysis using the Oxford nanopore sequence database	2
Pedigree reconstruction and population structure using SNP markers in Gir cattle	2
Utilization of doubled haploid breeding approach in introgression of QTL/gene(s) for parental line improvement of hybrid rice	2
Factors affecting clinical manifestation of chromosomal imbalance in carriers of segmental autosomal mosaicism: differential impact of gender	2
Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP	2
Correction to: Genome‑wide post‑transcriptional regulation of bovine mammary gland response to Streptococcus uberis	2
Genome size and gas chromatography-mass spectrometry (GC–MS) analysis of field-grown and in vitro regenerated Pluchea lanceolata plants	2
Genetic testing—whether to allow complete freedom? Direct to consumer tests versus genetic tests for medical purposes	2
Genetic implications of PSMA expression variability in breast cancer subtypes with a focus on triple-negative breast cancer	2
Unraveling the genetic diversity, population structure, and stability for yield-related traits of rice genotypes in mid-hills of northeastern India	2
Computational analysis of MYC gene variants: structural and functional impact of non-synonymous SNPs	2
Genetic basis of some physiological traits and yield in early and late sowing conditions in bread wheat (Triticum aestivum L.)	2
Transcript level of telomerase reverse-transcriptase (TERT) gene in the rainbow trout (Oncorhynchus mykiss) eggs with different developmental competence for gynogenesis	2
CALR—mutant myeloproliferative neoplasms: insights from next-generation sequencing	2
Multiplex PCR assay for the simultaneous identification of race specific and non-specific leaf resistance genes in wheat (Triticum aestivum L.)	2
Expanding TBCE-related phenotype—novel variant causing rigid spine, eosinophilia, neutropenia, and nocturnal hypoxemia	2
Genetic analysis of autosomal dominant polycystic kidney disease in Iranian families: a combined Sanger and next-generation sequencing study	2
Assessment of natural DNA methylation variation and its association with economically important traits in dolichos bean (Lablab purpureus L. Var. Lignosus) using AMP-PCR assay	2
Correction to: Identification of significant marker‑trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	2
Molecular characterization of doublesex and Mab-3 (DMRT) gene family in Ctenopharyngodon idella (grass carp)	2
An explanation for the decreased severity of liver malfunction in Niemann-Pick C1 disease with age	2
Transcriptome meta-analysis-based identification of hub transcription factors and RNA-binding proteins potentially orchestrating gene regulatory cascades and crosstalk in response to abiotic stresses	2
Highly diverse phenotypes of mucopolysaccharidosis type IIIB sibling patients: effects of an additional mutation in the AUTS2 gene	2
Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)	2
Experimental evaluation of effectiveness of genomic selection for resistance to northern corn leaf blight in maize	2
Usefulness of alien sterilizing cytoplasms for the hybrid breeding of triticale (xTriticosecale Wittmack): preliminary results	2
Molecular background of Leber congenital amaurosis in a Polish cohort of patients—novel variants discovered by NGS	2
Correction to: The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems	2
Reconciling the debate on deamination on viral RNA	2
Evidence for parent-of-origin effects in autism spectrum disorder: a narrative review	2
Pharmacogenetic study of CES1 gene and enalapril efficacy	2
Pivotal role of biallelic frequency analysis in identifying copy number alterations using genome-wide methods in tumors with a high level of aneuploidy	2
SNP-based high-density linkage map construction and QTL mapping of black spot disease resistance in Chinese sand pear	2
The basis of mink susceptibility to SARS-CoV-2 infection	1
Brown trout in Oder estuary tributaries: genetic structure, stocking, and admixture	1
Identification of significant marker-trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	1
Antibiotic resistance, phylogenetic typing, and virulence genes profile analysis of uropathogenic Escherichia coli isolated from patients in southern Iraq	1
Integrating ferroptosis-related genes (FRGs) and prognostic models to enhance UCEC outcome prediction and therapeutic insights	1
Genetic and phenotypic parameters for sexual precocity and parasite resistance traits in Nellore cattle	1
Genetic mapping of adult-plant resistance genes to powdery mildew in triticale	1
Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review	1
Genetic analysis of milk minerals in dairy cattle: a review	1
DNA sequence features underlying large-scale duplications and deletions in human	1
DNA methylation dysregulation patterns in the 1p36 region instability	1
Comparing Bayesian models for the genetic evaluation of oocytes and embryo counts in Dairy Gir cattle	1
Genome-wide identification and characterization of ABC transporter superfamily in the legume Cajanus cajan	1
Gene-edited cells: novel allogeneic gene/cell therapy for epidermolysis bullosa	1
Population WGS-based spinal muscular atrophy carrier screening in a cohort of 1076 healthy Polish individuals	1
QTL analysis of sorghum grain traits based on high-density genetic map	1
Virulence genes, phylogenetic analysis, and antimicrobial resistance of Escherichia coli isolated from urinary tract infection in hospitalized patients and outpatients	1
Hfq influences ciprofloxacin accumulation in Escherichia coli independently of ompC and ompF post-transcriptional regulation	1
Development of a prognostic model for personalized prediction of colon adenocarcinoma (COAD) patient outcomes using methylation-driven genes	1
HO-CR and HOLL-CR: new forms of winter oilseed rape (Brassica napus L.) with altered fatty acid composition and resistance to selected pathotypes of Plasmodiophora brassicae (clubroot)	1
Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line	1
Functional analysis of HvSNAC1 in stomatal dynamics and drought adaptation	1

Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations	1
Non-mosaic X monosomy (77,X) in a female dog with signs of virilization	1
Modern therapies of nonsmall cell lung cancer	1
Pathogenic variants in plakophilin-2 gene (PKP2) are associated with better survival in arrhythmogenic right ventricular cardiomyopathy	1
Development of a novel gene expression panel for the characterization of MSCs for increased biological safety	1
High-resolution mapping of the quantitative trait locus (QTLs) conferring resistance to false smut disease in rice	1
Circulating miRNA as potential biomarkers for diabetes mellitus type 2: should we focus on searching for sex differences?	1
Correction to: Parentage‑based tagging and parentage analyses of stocked sea trout in Vistula River commercial catches	1
Transcriptomic analysis of inhibitory effects of isothiazolone antimicrobial agents on Aspergillus amstelodami ZR	1
Comparative karyotype analysis of the red brocket deer (M. americana sensu lato and M. rufa) complex: evidence of drastic chromosomal evolution and implications on speciation process	1
Analytical and numerical comparisons of two methods of estimation of additive × additive × additive interaction of QTL effects	1
High amylopectin in waxy maize synergistically affects seed germination and seedling vigour over traditional maize genotypes	1
High frequency of hotspot mutation in PTPN11 gene among Moroccan patients with Noonan syndrome	1
Integrative analysis of homologous recombination repair patterns unveils prognostic signatures and immunotherapeutic insights in breast cancer	1
A standardized protocol for genetically stable artificial seed production of Ficus religiosa L. using ISSR fingerprinting	1
The use of weighted multiple linear regression to estimate QTL × QTL × QTL interaction effects of winter wheat (Triticum aestivum L.) doubled-haploid lines	1
Is it possible to select body weight without compromising carcass traits and reproductive efficiency in Caracu cattle?	1
SARS-CoV-2 continuously optimizes its codon usage to adapt to human lung environment	1
Genetic diversity and inter-gene pool introgression of Mesoamerican Diversity Panel in common beans	1
HOXA9 versus HOXB9; particular focus on their controversial role in tumor pathogenesis	1
Total impact of oxidative stress genes on cardiovascular events—a 7-year follow-up study	1
The forerunners and successful partnerships behind the BioNTech mRNA vaccine	1
Correction to: Separating gene clustering in the rare mucopolysaccharidosis disease	1
Investigating the genetic profile of familial atypical cystic fibrosis patients (DeltaF508-CFTR) with neonatal biliary atresia	1