Journal of Applied Genetics

Article	Citations
A GBS-based GWAS analysis of adaptability and yield traits in bread wheat (Triticum aestivum L.)	38
Development of multinutrient-rich biofortified sweet corn hybrids through genomics-assisted selection of shrunken2, opaque2, lcyE and crtRB1 genes	32
Cytotoxic and genotoxic assessment of tungsten oxide nanoparticles in Allium cepa cells by Allium ana-telophase and comet assays	21
Unveiling the putative functional genes present in root-associated endophytic microbiome from maize plant using the shotgun approach	21
Genome-wide identification and function characterization of GATA transcription factors during development and in response to abiotic stresses and hormone treatments in pepper	20
Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2	19
Misdiagnosis in mucopolysaccharidoses	19
A GWAS to identify the cereal cyst nematode (Heterodera filipjevi) resistance loci in diverse wheat prebreeding lines	17
Commentary on “Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2”	16
Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis	15
European context of the diversity and phylogenetic position of SARS-CoV-2 sequences from Polish COVID-19 patients	15
Quantitative trait loci and candidate genes associated with freezing tolerance of winter triticale (× Triticosecale Wittmack)	14
Antibiotic resistance, phylogenetic typing, and virulence genes profile analysis of uropathogenic Escherichia coli isolated from patients in southern Iraq	13
A genome-wide association study for prolificacy in three Polish sheep breeds	13
Endemicity of OXA-23 and OXA-72 in clinical isolates of Acinetobacter baumannii from three neighbouring countries in Southeast Europe	13
Recent genetic advances on boar taint reduction as an alternative to castration: a review	13
Genome size and gas chromatography-mass spectrometry (GC–MS) analysis of field-grown and in vitro regenerated Pluchea lanceolata plants	12
SARS-CoV-2 competes with host mRNAs for efficient translation by maintaining the mutations favorable for translation initiation	12
Circulating miRNA as potential biomarkers for diabetes mellitus type 2: should we focus on searching for sex differences?	12
Reconciling the debate on deamination on viral RNA	11
Mutation profiling of a limbless pig reveals genome-wide regulation of RNA processing related to bone development	11
Old Catharanthus roseus culture (14 years) produced somatic embryos and plants and showed normal genome size; demonstrated an increased antioxidant defense mechanism; and synthesized stress proteins a	10
Direct somatic embryogenesis and flow cytometric assessment of ploidy stability in regenerants of Caladium × hortulanum ‘Fancy’	10
Genome-wide identification and characterization of Lectin receptor-like kinase (LecRLK) genes in mungbean (Vigna radiata L. Wilczek)	10
Further phenotypic delineation of the auriculocondylar syndrome type 2 with literature review	10

Genome-wide identification and expression analysis of the MADS-box transcription factor family in Camellia sinensis	10
QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)	10
DNA methylation studies in cattle	10
High-resolution mapping of the quantitative trait locus (QTLs) conferring resistance to false smut disease in rice	10
MiR-96-5p is an oncogene in lung adenocarcinoma and facilitates tumor progression through ARHGAP6 downregulation	10
RNA editing detection in SARS-CoV-2 transcriptome should be different from traditional SNV identification	9
Dog–human translational genomics: state of the art and genomic resources	9
Enhancement of nutritional quality in maize kernel through marker-assisted breeding for vte4, crtRB1, and opaque2 genes	9
Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress	9
The genetic basis of cold tolerance in cucumber (Cucumis sativus L.)—the latest developments and perspectives	8
Identification, genomic organization, and expression profiles of single C2H2 zinc finger transcription factors in tomato (Solanum lycopersicum)	8
MicroRNA signature in classical Hodgkin lymphoma	8
QTL mapping for adult plant resistance to wheat stripe rust in M96-5 × Guixie 3 wheat population	7
The basis of mink susceptibility to SARS-CoV-2 infection	7
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development	7
Genome-wide SSR markers in bottle gourd: development, characterization, utilization in assessment of genetic diversity of National Genebank of India and synteny with other related cucurbits	7
SERPINB2—its regulation and interplay with aryl hydrocarbon receptor	7
Genetic testing—whether to allow complete freedom? Direct to consumer tests versus genetic tests for medical purposes	7
Different response of perennial ryegrass—Epichloë endophyte symbiota to the elevated concentration of heavy metals in soil	7
Characterization of crtRB1- and vte4-based biofortified sweet corn inbreds for seed vigour and physico-biochemical traits	7
Genome-wide characterization of carotenoid oxygenase gene family in three cotton species and functional identification of GaNCED3 in drought and salt stress	7
Genetic diversity and population structure analysis for morphological traits in upland cotton (Gossypium hirsutum L.)	7
Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean	6
Genome-wide identification and expression analysis of glycosyltransferase gene family 1 in Quercus robur L.	6
Discovery of genomic regions associated with resistance to late wilt disease caused by Harpophora maydis (Samra, Sabet and Hing) in maize (Zea mays L.)	6
Pathogenic variants in plakophilin-2 gene (PKP2) are associated with better survival in arrhythmogenic right ventricular cardiomyopathy	6
Genetic mapping of adult-plant resistance genes to powdery mildew in triticale	6
Herbicide stress-induced DNA methylation changes in two Zea mays inbred lines differing in Roundup® resistance	6
Genetic analysis of novel resistance sources and genome-wide association mapping identified novel QTLs for resistance to Zymoseptoria tritici, the causal agent of septoria tritici blotch in wheat	6
Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships	6
Searching for new molecular markers for cells obtained from abdominal aortic aneurysm	6
In silico and in vitro analysis of the impact of single substitutions within EXO-motifs on Hsa-MiR-1246 intercellular transfer in breast cancer cell	6
Influence of coat color on genetic parameter estimates in horses	5
Genome-wide post-transcriptional regulation of bovine mammary gland response to Streptococcus uberis	5
A 1.84-Mb region on rice chromosome 2 carrying SPL4, SPL5 and MLO8 genes is associated with higher yield under phosphorus-deficient acidic soil	5
Identification of significant marker-trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	5
Telomere length variation does not correspond with the growth disturbances in the rainbow trout (Oncorhynchus mykiss)	5
MicroRNA in lung cancer—a novel potential way for early diagnosis and therapy	5
The complete chloroplast genome of Secale sylvestre (Poaceae: Triticeae)	5
Molecular background of Leber congenital amaurosis in a Polish cohort of patients—novel variants discovered by NGS	5
Molecular diversity, haplotype distribution and genetic variation flow of Bipolaris sorokiniana fungus causing spot blotch disease in different wheat-growing zones	5
Small mutations in Duchenne/Becker muscular dystrophy in 164 unrelated Polish patients	5
Expression gradient of metalloproteinases and their inhibitors from proximal to distal segments of abdominal aortic aneurysm	5
Modern therapies of nonsmall cell lung cancer	5
Enhancement of undecylprodigiosin production from marine endophytic recombinant strain Streptomyces sp. ALAA-R20 through low-cost induction strategy	5
Analytical and numerical comparisons of two methods of estimation of additive × additive × additive interaction of QTL effects	5
Genome-wide analysis of genetic predisposition to common polygenic cancers	4
A-to-I RNA editing shows dramatic up-regulation in osteosarcoma and broadly regulates tumor-related genes by altering microRNA target regions	4
A simple sexing test for elephant species and its application to faecal DNA	4
Mutagenic strategies against luxS gene affect the early stage of biofilm formation of Campylobacter jejuni	4

Triticale doubled haploid plant regeneration factors linked by structural equation modeling	4
Genome-wide identification and expression profiles of AP2/ERF transcription factor family in mung bean (Vigna radiata L.)	4
Application of a custom NGS gene panel revealed a high diagnostic utility for molecular testing of hereditary ataxias	4
Parentage-based tagging and parentage analyses of stocked sea trout in Vistula River commercial catches	4
Replacement of microsatellite markers by imputed medium-density SNP arrays for parentage control in German warmblood horses	4
Effect of copper and silver ions on sequence and DNA methylation changes in triticale regenerants gained via somatic embryogenesis	4
Portuguese wild hop diversity assessment by fast SNP genotyping using high-resolution melting	4
No evidence that long runs of homozygosity tend to harbor risk variants for polygenic obesity in Labrador retriever dogs	3
Genetic variation of Cerastium alpinum L. from Babia Góra, a critically endangered species in Poland	3
Genetic and genomic characterization followed by single-step genomic evaluation of withers height in German Warmblood horses	3
Chloroplast genome of the invasive Pyrus calleryana underscores the high molecular diversity of the species	3
Multimetal bioremediation from aqueous solution using dead biomass of Mucor sp. NRCC6 derived from detergent manufacturing effluent	3
Mitochondrial relationships between various chamomile accessions	3
Genetic basis of some physiological traits and yield in early and late sowing conditions in bread wheat (Triticum aestivum L.)	3
Circular RNA circ_0000119 promotes cervical cancer cell growth and migration via miR-433-3p/PAK2 axis	3
Clinical characteristics of Polish patients with molecularly confirmed Mowat-Wilson syndrome	3
Development of molecular markers based on LTR retrotransposon in the Cleistogenes songorica genome	3
The mutation profile of differentiated thyroid cancer coexisting with undifferentiated anaplastic cancer resembles that of anaplastic thyroid cancer but not that of archetypal differentiated thyroid c	3
Development of novel gene-based markers for waxy1 gene and their validation for exploitation in molecular breeding for enhancement of amylopectin in maize	3
Assessment of natural DNA methylation variation and its association with economically important traits in dolichos bean (Lablab purpureus L. Var. Lignosus) using AMP-PCR assay	3
Genetic mapping of pollen fertility restoration QTLs in rye (Secale cereale L.) with CMS Pampa	3
Genetic diversity in Kashubs: the regional increase in the frequency of several disease-causing variants	3
Total impact of oxidative stress genes on cardiovascular events—a 7-year follow-up study	2
CDON gene contributes to pituitary stalk interruption syndrome associated with unilateral facial and abducens nerve palsy	2
Genetic analysis of purple pigmentation in rice seed and vegetative parts — implications on developing high-yielding purple rice (Oryza sativa L.)	2
The forerunners and successful partnerships behind the BioNTech mRNA vaccine	2
Developing a new genic SSR primer database in faba bean (Vicia faba L.)	2
Prospective study relating genotype profiles with race performance in racing pigeons	2
Review of applications of artificial intelligence (AI) methods in crop research	2
Genome-wide association mapping in elite winter wheat breeding for yield improvement	2
Comparative analysis of developing grain transcriptome reveals candidate genes and pathways improving GPC in wheat lines derived from wild emmer	2
Inheritance vs. infectivity as a mechanism of malady and death of Frederic Chopin	2
Long-run real-time PCR analysis of repetitive nuclear elements as a novel tool for DNA damage quantification in single cells: an approach validated on mouse oocytes and fibroblasts	2
Comprehensive analyses of microtubule-associated protein MAP65 family genes in Cucurbitaceae and CsaMAP65s expression profiles in cucumber	2
Effect of genomic X-chromosome regions on Nelore bull fertility	2
Investigating the genetic profile of familial atypical cystic fibrosis patients (DeltaF508-CFTR) with neonatal biliary atresia	2
TGFα-EGFR pathway in breast carcinogenesis, association with WWOX expression and estrogen activation	2
Molecular complexity of diffuse large B-cell lymphoma: a molecular perspective and therapeutic implications	2
Congenital coenzyme Q5-linked pathology: causal genetic association, core phenotype, and molecular mechanism	2
Identification of eQTLs and differential gene expression associated with fetal programming in beef cattle	2
The improvement of the in vitro plant regeneration in barley with the epigenetic modifier of histone acetylation, trichostatin A	2
Another lesson from unmapped reads: in-depth analysis of RNA-Seq reads from various horse tissues	2
Separating gene clustering in the rare mucopolysaccharidosis disease	2
The effects of heading time on yield performance and HvGAMYB expression in spring barley subjected to drought	2
Highly diverse phenotypes of mucopolysaccharidosis type IIIB sibling patients: effects of an additional mutation in the AUTS2 gene	2
Pedigree reconstruction and population structure using SNP markers in Gir cattle	2
Variants of the CASP9 gene as candidate markers for primary response to anti-TNF therapy in Crohn’s disease patients	2
Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken	2
Population structure and genetic diversity of a germplasm for hybrid breeding in rye (Secale cereale L.) using high-density DArTseq-based silicoDArT and SNP markers	2
Molecular identification of triticale introgression lines carrying leaf rust resistance genes transferred from Aegilops kotschyi Boiss. and Ae. tauschii Coss	2
Characterization of runs of Homozygosity revealed genomic inbreeding and patterns of selection in indigenous sahiwal cattle	2
Comparative genomic analysis of Stenotrophomonas maltophilia unravels their genetic variations and versatility trait	2
Cytogenetic investigation of Arctic char × brook trout F1, F2 and backcross hybrids revealed remnants of the chromosomal rearrangements	2
Genetic mapping of male sterility and pollen fertility QTLs in triticale with sterilizing Triticum timopheevii cytoplasm	2
Genetic variants of MTHFR gene in relation to folic acid levels and bone mineral density in Polish patients with inflammatory bowel disease	2
Canis MitoSNP database: a functional tool useful for comparative analyses of human and canine mitochondrial genomes	2
In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM)	2
Factors affecting clinical manifestation of chromosomal imbalance in carriers of segmental autosomal mosaicism: differential impact of gender	2
Triticale field phenotyping using RGB camera for ear counting and yield estimation	2
Correction to: Identification of significant marker‑trait associations for Fusarium wilt resistance in a genetically diverse core collection of safflower using AFLP and SSR markers	1
Integrative multiomics and weighted network approach reveals the prognostic role of RPS7 in lung squamous cell carcinoma pathogenesis	1
Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074	1
Metal tolerance gene family in barley: an in silico comprehensive analysis	1
Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations	1
Investigation of the biofilm formation in extra-intestinal pathogenic Escherichia coli ST131 strains and its correlation with the presence of fimH, afa, and kpsMSTII genes	1
Effect of thermal conditioning on serum electrolytes, metabolites, corticosterone and expression of CRH gene in selected chicken strains	1
Methylation of hypoxia-inducible factor 3 subunit alpha contributes to poor prognosis in lung adenocarcinoma	1
Genetic analysis of milk minerals in dairy cattle: a review	1
Cytomolecular analysis of mutants, breeding lines, and varieties of camelina (Camelina sativa L. Crantz)	1
Population WGS-based spinal muscular atrophy carrier screening in a cohort of 1076 healthy Polish individuals	1
New PCR-specific markers for pollen fertility restoration QRfp-4R in rye (Secale cereale L.) with Pampa sterilizing cytoplasm	1
Genetic diversity and inter-gene pool introgression of Mesoamerican Diversity Panel in common beans	1
Anthropogenic hybridization and its influence on the adaptive potential of the Sardinian wild boar (Sus scrofa meridionalis)	1
Investigation of mutation spectrum amongst patients with familial primary cardiomyopathy using targeted NGS in Indian population	1
Comparative transcriptome and adaptive evolution analysis on the main liver and attaching liver of Pareuchiloglanis macrotrema	1
Application of OpenArray RT-qPCR for identification of microRNA expression signatures of lower extremity artery disease	1
Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis	1
HPV-driven oncogenesis—much more than the E6 and E7 oncoproteins	1
Uncovering the role of aquaporin and chromobox family members as potential biomarkers in head and neck squamous cell carcinoma via integrative multiomics and in silico approach	1
Autosomal recessive diseases among the Athabaskans of the southwestern United States: anthropological, medical, and scientific aspects	1

Identification of co-expressed genes and immune infiltration features related to the progression of atherosclerosis	1
DNA ligase IV mutations confer shorter lifespan and increased sensitivity to nutrient stress in Drosophila melanogaster	1
Exploring genomic inbreeding and selection signatures in a commercial Brangus herd through functional annotation	1
Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review	1
Multiplex PCR assay for the simultaneous identification of race specific and non-specific leaf resistance genes in wheat (Triticum aestivum L.)	1
Population structure and genetic differentiation analyses reveal high level of diversity and allelic richness in crop wild relatives of AA genome species of rice (Oryza sativa L.) in India	1
The use of weighted multiple linear regression to estimate QTL × QTL × QTL interaction effects of winter wheat (Triticum aestivum L.) doubled-haploid lines	1
Inhibition of the glutamate-cysteine ligase catalytic subunit with buthionine sulfoximine enhances the cytotoxic effect of doxorubicin and cyclophosphamide in Burkitt lymphoma cells	1
Evidence for parent-of-origin effects in autism spectrum disorder: a narrative review	1
Integrative analysis of homologous recombination repair patterns unveils prognostic signatures and immunotherapeutic insights in breast cancer	1
Chromatinopathies: insight in clinical aspects and underlying epigenetic changes	1
Heritability of chronic thermal tolerance and genetic correlations with growth traits in the Pacific oyster (Crassostrea gigas)	1
FGFR3 and FGFR4 overexpression in juvenile nasopharyngeal angiofibroma: impact of smoking history and implications for personalized management	1
Correction to: DNA methylation studies in cattle	1
Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode	1
Assessing cytotoxicity and endoplasmic reticulum stress in human blood–brain barrier cells due to silver and copper oxide nanoparticles	1
Non-mosaic X monosomy (77,X) in a female dog with signs of virilization	1
NADPH oxidase 4-mediating oxidative stress contributes to endometriosis	1
A mis-splicing early flowering 3 (elf3) allele of lentil is associated with yield enhancement under terminal heat stress	1
Comprehensive bioinformatics analysis reveals the oncogenic role of FoxM1 and its impact on prognosis, immune microenvironment, and drug sensitivity in osteosarcoma	1
SNP-based high-density linkage map construction and QTL mapping of black spot disease resistance in Chinese sand pear	1
Transcriptome meta-analysis-based identification of hub transcription factors and RNA-binding proteins potentially orchestrating gene regulatory cascades and crosstalk in response to abiotic stresses	1
Anthropometric characteristics of 65 Polish Smith-Lemli-Opitz patients	1
Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP	1
Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)	1
Modulation of lncRNA NEAT1 overturns the macrophages based immune response in M. tuberculosis infected patients via miR-373 regulation	1
The role of multidisciplinary diagnostic and therapeutic model of care in Lamb-Shaffer syndrome - case report	1
Genome-wide identification and characterization of ABC transporter superfamily in the legume Cajanus cajan	1
Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active ba	1
Virulence genes, phylogenetic analysis, and antimicrobial resistance of Escherichia coli isolated from urinary tract infection in hospitalized patients and outpatients	1