Journal of Microbiology

(The TQCC of Journal of Microbiology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 500 papers]. The publications cover those that have been published in the past four years, i.e., from 2019-09-01 to 2023-09-01.)
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity106
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis54
Machine learning methods for microbiome studies49
Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis39
Microbial community analysis using high-throughput sequencing technology: a beginner’s guide for microbiologists31
Linking the gut microbiota to persistent symptoms in survivors of COVID-19 after discharge30
Raloxifene as a treatment option for viral infections30
Potential of Bacillus velezensis as a probiotic in animal feed: a review29
Burkholderia thailandensis outer membrane vesicles exert antimicrobial activity against drug-resistant and competitor microbial species29
Flavobacterium humi sp. nov., a flexirubin-type pigment producing bacterium, isolated from soil25
Comparative genomics of Lactobacillus species as bee symbionts and description of Lactobacillus bombintestini sp. nov., isolated from the gut of Bombus ignitus24
Dissection of plant microbiota and plant-microbiome interactions24
Omics in gut microbiome analysis24
Development of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) thermal inactivation method with preservation of diagnostic sensitivity23
Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants23
GABA-producing Lactobacillus plantarum inhibits metastatic properties and induces apoptosis of 5-FU-resistant colorectal cancer cells via GABAB receptor signaling22
Microbial consortia including methanotrophs: some benefits of living together21
User guide for the discovery of potential drugs via protein structure prediction and ligand docking simulation21
Anti-inflammatory and anti-oxidative effect of Korean propolis on Helicobacter pylori-induced gastric damage in vitro20
Prokaryotic DNA methylation and its functional roles20
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleep20
Recent advances in genetic engineering tools based on synthetic biology20
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus, 20
Natronorubrum halophilum sp. nov. isolated from two inland salt lakes19
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria19
A comprehensive review of SARS-CoV-2 genetic mutations and lessons from animal coronavirus recombination in one health perspective18
SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways18
A study of P release from Fe-P and Ca-P via the organic acids secreted by Aspergillus niger18
Rediscovery of antimicrobial peptides as therapeutic agents18
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective18
Hahyoungchilella caricis gen. nov., sp. nov., isolated from a rhizosphere mudflat of a halophyte (Carex scabrifolia), transfer of Thioclava arenosa Thongphrom et al. 2017 to Pseudothioclava as Pseudot17
Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing17
The effects of cigarettes and alcohol on intestinal microbiota in healthy men17
The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance16
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes16
Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food15
Intervention with kimchi microbial community ameliorates obesity by regulating gut microbiota15
Lactobacillus plantarum-derived metabolites sensitize the tumor-suppressive effects of butyrate by regulating the functional expression of SMCT1 in 5-FU-resistant colorectal cancer cells15
Melatonin attenuates microbiota dysbiosis of jejunum in short-term sleep deprived mice14
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-214
Impact of feeding regimens on the composition of gut microbiota and metabolite profiles of plasma and feces from Mongolian sheep14
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark div14
Recent advances in the development of β-lactamase inhibitors14
Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater14
Anaerotignum faecicola sp. nov., isolated from human faeces14
A histone deacetylase, MoHOS2 regulates asexual development and virulence in the rice blast fungus14
Lactobacillus plantarum lipoteichoic acid disrupts mature Enterococcus faecalis biofilm14
Short-term effects of returning granulated straw on soil microbial community and organic carbon fractions in dryland farming14
Optimization of bacterial sporulation using economic nutrient for self-healing concrete14
Phytochemicals for the treatment of COVID-1914
Current status and perspectives on vaccine development against dengue virus infection13
Autophagy of bovine mammary epithelial cell induced by intracellular Staphylococcus aureus13
The synergy effect of arbuscular mycorrhizal fungi symbiosis and exogenous calcium on bacterial community composition and growth performance of peanut (Arachis hypogaea L.) in saline alkali soil13
Influences of genetically perturbing synthesis of the typical yellow pigment on conidiation, cell wall integrity, stress tolerance, and cellulase production in Trichoderma reesei13
Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri Vent Field of the Central Indian Ocean ridge12
Variations of microbial community in Aconitum carmichaeli Debx. rhizosphere soilin a short-term continuous cropping system12
Martelella lutilitoris sp. nov., isolated from a tidal mudflat12
High-throughput cultivation based on dilution-to-extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake Soyang12
Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy12
Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing12
Different distribution patterns of microorganisms between aquaculture pond sediment and water12
Oecophyllibacter saccharovorans gen. nov. sp. nov., a bacterial symbiont of the weaver ant Oecophylla smaragdina12
Production and characterization of melanin pigments derived from Amorphotheca resinae12
Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea12
Lactobacillus-derived metabolites enhance the antitumor activity of 5-FU and inhibit metastatic behavior in 5-FU-resistant colorectal cancer cells by regulating claudin-1 expression12
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments12
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds11
Potency of Phlebia species of white rot fungi for the aerobic degradation, transformation and mineralization of lindane11
Flavobacterium zhairuonensis sp. nov., a gliding bacterium isolated from marine sediment of the East China Sea11
Performance comparison of fecal preservative and stock solutions for gut microbiome storage at room temperature11
Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil11
Pukyongia salina gen. nov., sp. nov., a novel genus in the family Flavobacteriaceae11
Propionate, together with triple antibiotics, inhibits the growth of Enterococci11
Regulation of the AcrAB efflux system by the quorum-sensing regulator AnoR in Acinetobacter nosocomialis10
Inferences in microbial structural signatures of acne microbiome and mycobiome10
Microbial source tracking using metagenomics and other new technologies10
Bacterial bug-out bags: outer membrane vesicles and their proteins and functions10
Vibrio parahaemolyticus cqsA controls production of quorum sensing signal molecule 3-hydroxyundecan-4-one and regulates colony morphology10
Probiotic supplements alleviate gestational diabetes mellitus by restoring the diversity of gut microbiota: a study based on 16S rRNA sequencing10
RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli10
Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data10
Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China10
Anti-MRSA agent discovery using Caenorhabditis elegans-based high-throughput screening10
The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus10
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota9
Application of computational approaches to analyze metagenomic data9
Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people9
Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds9
Long-term continuously monocropped peanut significantly disturbed the balance of soil fungal communities9
Two years of COVID-19 pandemic: where are we now?9
Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation9
Differences in the gut microbiota between Cercopithecinae and Colobinae in captivity9