Journal of Microbiology

Article	Citations
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity	149
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis	79
Potential of Bacillus velezensis as a probiotic in animal feed: a review	46
Linking the gut microbiota to persistent symptoms in survivors of COVID-19 after discharge	37
Burkholderia thailandensis outer membrane vesicles exert antimicrobial activity against drug-resistant and competitor microbial species	33
Dissection of plant microbiota and plant-microbiome interactions	31
Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants	31
Raloxifene as a treatment option for viral infections	30
Omics in gut microbiome analysis	29
Prokaryotic DNA methylation and its functional roles	27
GABA-producing Lactobacillus plantarum inhibits metastatic properties and induces apoptosis of 5-FU-resistant colorectal cancer cells via GABAB receptor signaling	27
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective	25
Development of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) thermal inactivation method with preservation of diagnostic sensitivity	25
Comparative genomics of Lactobacillus species as bee symbionts and description of Lactobacillus bombintestini sp. nov., isolated from the gut of Bombus ignitus	25
Anti-inflammatory and anti-oxidative effect of Korean propolis on Helicobacter pylori-induced gastric damage in vitro	24
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria	23
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleep	23
The effects of cigarettes and alcohol on intestinal microbiota in healthy men	23
Rediscovery of antimicrobial peptides as therapeutic agents	22
Lactobacillus plantarum-derived metabolites sensitize the tumor-suppressive effects of butyrate by regulating the functional expression of SMCT1 in 5-FU-resistant colorectal cancer cells	21
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus,	21
SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways	20
A comprehensive review of SARS-CoV-2 genetic mutations and lessons from animal coronavirus recombination in one health perspective	19
A study of P release from Fe-P and Ca-P via the organic acids secreted by Aspergillus niger	19
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-2	18

Phytochemicals for the treatment of COVID-19	18
Intervention with kimchi microbial community ameliorates obesity by regulating gut microbiota	18
Current status and perspectives on vaccine development against dengue virus infection	18
Short-term effects of returning granulated straw on soil microbial community and organic carbon fractions in dryland farming	17
Melatonin attenuates microbiota dysbiosis of jejunum in short-term sleep deprived mice	17
The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance	17
The synergy effect of arbuscular mycorrhizal fungi symbiosis and exogenous calcium on bacterial community composition and growth performance of peanut (Arachis hypogaea L.) in saline alkali soil	17
Impact of feeding regimens on the composition of gut microbiota and metabolite profiles of plasma and feces from Mongolian sheep	17
Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food	16
Ammonia-oxidizing archaea in biological interactions	15
Recent advances in the development of β-lactamase inhibitors	15
Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data	15
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark div	15
Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy	15
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments	15
Production and characterization of melanin pigments derived from Amorphotheca resinae	14
Different distribution patterns of microorganisms between aquaculture pond sediment and water	14
The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus	14
Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing	14
Variations of microbial community in Aconitum carmichaeli Debx. rhizosphere soilin a short-term continuous cropping system	14
Lactobacillus-derived metabolites enhance the antitumor activity of 5-FU and inhibit metastatic behavior in 5-FU-resistant colorectal cancer cells by regulating claudin-1 expression	14
Influences of genetically perturbing synthesis of the typical yellow pigment on conidiation, cell wall integrity, stress tolerance, and cellulase production in Trichoderma reesei	14
Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China	13
Microbial source tracking using metagenomics and other new technologies	13
Long-term continuously monocropped peanut significantly disturbed the balance of soil fungal communities	13
Inferences in microbial structural signatures of acne microbiome and mycobiome	13
High-throughput cultivation based on dilution-to-extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake Soyang	13
Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater	13
Probiotic supplements alleviate gestational diabetes mellitus by restoring the diversity of gut microbiota: a study based on 16S rRNA sequencing	13
Oecophyllibacter saccharovorans gen. nov. sp. nov., a bacterial symbiont of the weaver ant Oecophylla smaragdina	13
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota	12
COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity	12
Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation	12
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds	12
Potency of Phlebia species of white rot fungi for the aerobic degradation, transformation and mineralization of lindane	12
Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri Vent Field of the Central Indian Ocean ridge	12
Performance comparison of fecal preservative and stock solutions for gut microbiome storage at room temperature	12
Two years of COVID-19 pandemic: where are we now?	12
Comparative genomics analysis of Pediococcus acidilactici species	12
Pukyongia salina gen. nov., sp. nov., a novel genus in the family Flavobacteriaceae	11
Regulation of the AcrAB efflux system by the quorum-sensing regulator AnoR in Acinetobacter nosocomialis	11
Endophytic bacterial and fungal microbiota in different cultivars of cassava (Manihot esculenta Crantz)	11
Regulation of gene expression by protein lysine acetylation in Salmonella	11
The human symbiont Bacteroides thetaiotaomicron promotes diet-induced obesity by regulating host lipid metabolism	11
Effects of multi-species probiotic supplementation on alcohol metabolism in rats	10
Distinct gut microbiotas between southern elephant seals and Weddell seals of Antarctica	10
Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people	10
Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides	10
Bacterial bug-out bags: outer membrane vesicles and their proteins and functions	10
Anti-MRSA agent discovery using Caenorhabditis elegans-based high-throughput screening	10

Diversity and composition of microbiota during fermentation of traditional Nuodeng ham	9
Biosynthesis of adipic acid in metabolically engineered Saccharomyces cerevisiae	9
Chitosan-chelated zinc modulates cecal microbiota and attenuates inflammatory response in weaned rats challenged with Escherichia coli	9
Application of computational approaches to analyze metagenomic data	9
Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF377 reveals a member of “Fusagraviridae” with changes in antifungal activity of the host fungus	9
Gene deletion and constitutive expression of the pectate lyase gene 1 (MoPL1) lead to diminished virulence of Magnaporthe oryzae	9
Coronavirus enzyme inhibitors-experimentally proven natural compounds from plants	9
Deep convolutional neural network: a novel approach for the detection of Aspergillus fungi via stereomicroscopy	9
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice	9
Development of a real-time loop-mediated isothermal amplification method for the detection of severe fever with thrombocytopenia syndrome virus	9
Differences in the gut microbiota between Cercopithecinae and Colobinae in captivity	9
Metaviromics coupled with phage-host identification to open the viral ‘black box’	9
Screening of small molecules attenuating biofilm formation of Acinetobacter baumannii by inhibition of ompA promoter activity	8
Simultaneous detection of Salmonella spp., Pseudomonas aeruginosa, Bacillus cereus, and Escherichia coli O157:H7 in environmental water using PMA combined with mPCR	8
The inner membrane protein LapB is required for adaptation to cold stress in an LpxC-independent manner	8
Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi	8
The comparison of microbial communities in thyroid tissues from thyroid carcinoma patients	8
Transmissibility and pathogenicity of SARS-CoV-2 variants in animal models	8
Ganoderma boninense mycelia for phytochemicals and secondary metabolites with antibacterial activity	8
Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome	8
Inhibitory effects of piceatannol on human cytomegalovirus (hCMV) in vitro	8
NF-κB/ROS and ERK pathways regulate NLRP3 inflammasome activation in Listeria monocytogenes infected BV2 microglia cells	8
T cell responses to SARS-CoV-2 in humans and animals	8
Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil	8
Pikeienuella piscinae gen. nov., sp. nov., a novel genus in the family Rhodobacteraceae	8
Detection of colistin-resistant populations prior to antibiotic exposure in KPC-2-producing Klebsiella pneumoniae clinical isolates	7
Erratum to: Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)	7
Biophysical characterization of antibacterial compounds derived from pathogenic fungi Ganoderma boninense	7
Phosphate sugar isomerases and their potential for rare sugar bioconversion	7
Effect of exopolysaccharides of Paenibacillus polymyxa rhizobacteria on physiological and morphological variables of wheat seedlings	7
Omp16, a conserved peptidoglycan-associated lipoprotein, is involved in Brucella virulence in vitro	7
Influence of dragon bamboo with different planting patterns on microbial community and physicochemical property of soil on sunny and shady slopes	7
Mst1/2-ALK promotes NLRP3 inflammasome activation and cell apoptosis during Listeria monocytogenes infection	7
Lactobacillus crispatus and its enolase and glutamine synthetase influence interactions between Neisseria gonorrhoeae and human epithelial cells	7
The osmotic stress response operon betIBA is under the functional regulation of BetI and the quorum-sensing regulator AnoR in Acinetobacter nosocomialis	6
Activity of Lactobacillus crispatus isolated from vaginal microbiota against Mycobacterium tuberculosis	6
Potato tillage method is associated with soil microbial communities, soil chemical properties, and potato yield	6
Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory	6
Genetic linkage map construction and quantitative trait loci mapping of agronomic traits in Gloeostereum incarnatum	6
Characterization and bioefficacy of green nanosilver particles derived from fungicide-tolerant Tricho-fusant for efficient biocontrol of stem rot (Sclerotium rolfsii Sacc.) in groundnut (Arachis hypog	6
Raman spectroscopy reveals alteration of spore compositions under different nutritional conditions in Lysinibacillus boronitolerans YS11	6
Direct current exerts electricidal and bioelectric effects on Porphyromonas gingivalis biofilms partially via promoting oxidative stress and antibiotic transport	6
Caspase-3 inhibitor inhibits enterovirus D68 production	6
The effects of deletion of cellobiohydrolase genes on carbon source-dependent growth and enzymatic lignocellulose hydrolysis in Trichoderma reesei	6
Antiviral effects of human placenta hydrolysate (Laennec®) against SARS-CoV-2 in vitro and in the ferret model	6
Coordinated regulation of interferon and inflammasome signaling pathways by SARS-CoV-2 proteins	5
Omics-based microbiome analysis in microbial ecology: from sequences to information	5
Envelope-Stress Sensing Mechanism of Rcs and Cpx Signaling Pathways in Gram-Negative Bacteria	5
Potential roles of condensin in genome organization and beyond in fission yeast	5
Salmonella Typhimurium ST313 isolated in Brazil revealed to be more invasive and inflammatory in murine colon compared to ST19 strains	5
The effect of the HRB linker of Newcastle disease virus fusion protein on the fusogenic activity	5
Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae	5
Phenotypic characterization of a conserved inner membrane protein YhcB in Escherichia coli	5
Insights into the immune responses of SARS-CoV-2 in relation to COVID-19 vaccines	5
Promoter exchange of the cryptic nonribosomal peptide synthetase gene for oligopeptide production in Aspergillus oryzae	5
Similarities and differences between 6S RNAs from Bradyrhizobium japonicum and Sinorhizobium meliloti	5
Vibrio vulnificus PlpA facilitates necrotic host cell death induced by the pore forming MARTX toxin	5
Changes in the microbial community of Litopenaeus vannamei larvae and rearing water during different growth stages after disinfection treatment of hatchery water	5
Impact of small RNA RaoN on nitrosative-oxidative stress resistance and virulence of Salmonella enterica serovar Typhimurium	5
Bacterial Crosstalk via Antimicrobial Peptides on the Human Skin: Therapeutics from a Sustainable Perspective	5
Limiting the pathogenesis of Salmonella Typhimurium with berry phenolic extracts and linoleic acid overproducing Lactobacillus casei	5
Phosphorylation of tegument protein pp28 contributes to trafficking to the assembly compartment in human cytomegalovirus infection	5
Ciceribacter ferrooxidans sp. nov., a nitrate-reducing Fe(II)-oxidizing bacterium isolated from ferrous ion-rich sediment	5
WasC, a WASP family protein, is involved in cell adhesion and migration through regulation of F-actin polymerization in Dictyostelium	5
Function of Rhs proteins in porcine extraintestinal pathogenic Escherichia coli PCN033	4
The putative sensor histidine kinase VadJ coordinates development and sterigmatocystin production in Aspergillus nidulans	4
Azohydromonas aeria sp. nov., isolated from air	4
Trans-acting regulators of ribonuclease activity	4
Erratum to: Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of	4
Characterization of a novel phage depolymerase specific to Escherichia coli O157:H7 and biofilm control on abiotic surfaces	4
Agromyces laixinhei sp. nov. isolated from bat feces in China	4
Recent Advances in CRISPR-Cas Technologies for Synthetic Biology	4
Response of sheep rumen fermentation and microbial communities to feed infected with the endophyte Epichloë gansuensis as evaluated with rumen-simulating technology	4
Rab27b regulates extracellular vesicle production in cells infected with Kaposi’s sarcoma-associated herpesvirus to promote cell survival and persistent infection	4
Effects of rehydration on physiological and transcriptional responses of a water-stressed rhizobium	4
Influence of Microbiota on Vaccine Effectiveness: “Is the Microbiota the Key to Vaccine-induced Responses?”	4
Middle East Respiratory Syndrome coronavirus vaccine development: updating clinical studies using platform technologies	4
Rhizosphere Microbial Community and Metabolites of Susceptible and Resistant Tobacco Cultivars to Bacterial Wilt	4
Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato (Solanum lycopersicum)	4
Rapid determination of carbapenem resistance by low-cost colorimetric methods: Propidium Iodide and alamar blue staining	4

Minor and major circRNAs in virus and host genomes	4
The functional study of human proteins using humanized yeast	4
Manganese Transporter Proteins in Salmonella enterica serovar Typhimurium	4
RETRACTED ARTICLE: Cryptic prophages in a blaNDM-1-bearing plasmid increase bacterial survival against high NaCl concentration, high and low temperatures, and oxidative and immunological stressors	4
Proteomic analysis reveals the temperature-dependent presence of extracytoplasmic peptidases in the biofilm exoproteome of Listeria monocytogenes EGD-e	4
Iron interferes with quorum sensing-mediated cooperation in Pseudomonas aeruginosa by affecting the expression of ppyR and mexT, in addition to rhlR	4
Vaginal Microbiome Dysbiosis is Associated with the Different Cervical Disease Status	3
Adenosylhomocysteinase like 1 interacts with nonstructural 5A and regulates hepatitis C virus propagation	3
Functional and structural characterization of Deinococcus radiodurans R1 MazEF toxin-antitoxin system, Dr0416-Dr0417	3
The role of Jacalin-related lectin gene AOL_s00083g511 in the development and pathogenicity of the nematophagous fungus Arthrobotrys oligospora	3
Evolutionary analysis and protein family classification of chitin deacetylases in Cryptococcus neoformans	3
Heterologous Production and Structure Determination of a New Lanthipeptide Sinosporapeptin Using a Cryptic Gene Cluster in an Actinobacterium Sinosporangium siamense	3
The type II histidine triad protein HtpsC facilitates invasion of epithelial cells by highly virulent Streptococcus suis serotype 2	3
Isolation of a novel strain, Sphingorhabdus sp. YGSMI21 and characterization of its enantioselective epoxide hydrolase activity	3
Effect of biostimulation and bioaugmentation on hydrocarbon degradation and detoxification of diesel-contaminated soil: a microcosm study	3
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.	3
Functional characterization of HigBA toxin-antitoxin system in an Arctic bacterium, Bosea sp. PAMC 26642	3
The “Cins” of Our Fathers: Rejuvenated Interest in Colicins to Combat Drug Resistance	3
Incomplete autophagy promotes the replication of Mycoplasma hyopneumoniae	3
Crystal structure of human LC8 bound to a peptide from Ebola virus VP35	3
The relationship between bacterial diversity and organic carbon mineralization in soft rock and sand compound soil	3
Metformin Regulates Gut Microbiota Abundance to Suppress M2 Skewing of Macrophages and Colorectal Tumorigenesis in Mice	3
Characterization of staphylococcal endolysin LysSAP33 possessing untypical domain composition	3
Structural and sequence comparisons of bacterial enoyl-CoA isomerase and enoyl-CoA hydratase	3
Analyses of DNA double-strand break repair pathways in tandem arrays of HXT genes of Saccharomyces cerevisiae	3
Protective and pathogenic role of humoral responses in COVID-19	3
Full-repertoire comparison of the microscopic objects composing the human gut microbiome with sequenced and cultured communities	3
The cytoplasmic loops of AgrC contribute to the quorum-sensing activity of Staphylococcus aureus	3
Soil water content as a critical factor for stable bacterial community structure and degradative activity in maritime Antarctic soil	3
Gut Lactobacillus and Probiotics Lactobacillus lactis/rhamnosis Ameliorate Liver Fibrosis in Prevention and Treatment	3
Meiotic prophase roles of Pds5 in recombination and chromosome condensation in budding yeast	3
Stenotrophomonas maltophilia outer membrane protein A induces epithelial cell apoptosis via mitochondrial pathways	3
CagL polymorphisms between East Asian and Western Helicobacter pylori are associated with different abilities to induce IL-8 secretion	3
Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha	3
Molecular characterization of the Saccharomycopsis fibuligera ATF genes, encoding alcohol acetyltransferase for volatile acetate ester formation	3
Erratum to: Hahyoungchilella caricis gen. nov., sp. nov., isolated from a rhizosphere mudflat of a halophyte (Carex scabrifolia), transfer of Thioclava arenosa Thongphrom et al. 2017 to Pseudothioclav	3
A mucin-responsive hybrid two-component system controls Bacteroides thetaiotaomicron colonization and gut homeostasis	3
The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman	3
Epidemiological Characteristics of Norovirus Outbreaks in Shenyang from 2017 to 2021	3