Journal of Microbiology

Article	Citations
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity	227
UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis	127
Potential of Bacillus velezensis as a probiotic in animal feed: a review	61
Linking the gut microbiota to persistent symptoms in survivors of COVID-19 after discharge	45
Prokaryotic DNA methylation and its functional roles	44
Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants	39
Dissection of plant microbiota and plant-microbiome interactions	39
Omics in gut microbiome analysis	39
Raloxifene as a treatment option for viral infections	35
GABA-producing Lactobacillus plantarum inhibits metastatic properties and induces apoptosis of 5-FU-resistant colorectal cancer cells via GABAB receptor signaling	31
Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective	30
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria	28
Current status and perspectives on vaccine development against dengue virus infection	26
Lactobacillus plantarum-derived metabolites sensitize the tumor-suppressive effects of butyrate by regulating the functional expression of SMCT1 in 5-FU-resistant colorectal cancer cells	25
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-2	24
The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus	24
Different distribution patterns of microorganisms between aquaculture pond sediment and water	23
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleep	23
Rediscovery of antimicrobial peptides as therapeutic agents	23
A study of P release from Fe-P and Ca-P via the organic acids secreted by Aspergillus niger	22
The synergy effect of arbuscular mycorrhizal fungi symbiosis and exogenous calcium on bacterial community composition and growth performance of peanut (Arachis hypogaea L.) in saline alkali soil	21
Phytochemicals for the treatment of COVID-19	21
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments	21
SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways	21
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus,	21

Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data	20
Temperature Matters: Bacterial Response to Temperature Change	20
The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance	19
A comprehensive review of SARS-CoV-2 genetic mutations and lessons from animal coronavirus recombination in one health perspective	19
Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China	17
Ammonia-oxidizing archaea in biological interactions	17
Variations of microbial community in Aconitum carmichaeli Debx. rhizosphere soilin a short-term continuous cropping system	17
Comparative genomics analysis of Pediococcus acidilactici species	17
Microbial phenomics linking the phenotype to function: The potential of Raman spectroscopy	17
Microbial source tracking using metagenomics and other new technologies	16
The human symbiont Bacteroides thetaiotaomicron promotes diet-induced obesity by regulating host lipid metabolism	16
Inferences in microbial structural signatures of acne microbiome and mycobiome	15
Regulation of gene expression by protein lysine acetylation in Salmonella	15
COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity	15
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark div	15
Influences of genetically perturbing synthesis of the typical yellow pigment on conidiation, cell wall integrity, stress tolerance, and cellulase production in Trichoderma reesei	15
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice	14
Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people	14
Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation	13
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota	13
Probiotic supplements alleviate gestational diabetes mellitus by restoring the diversity of gut microbiota: a study based on 16S rRNA sequencing	13
Two years of COVID-19 pandemic: where are we now?	13
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds	13
Effects of Continuous Straw Returning on Soil Functional Microorganisms and Microbial Communities	12
NF-κB/ROS and ERK pathways regulate NLRP3 inflammasome activation in Listeria monocytogenes infected BV2 microglia cells	12
Effects of multi-species probiotic supplementation on alcohol metabolism in rats	12
Deep convolutional neural network: a novel approach for the detection of Aspergillus fungi via stereomicroscopy	12
Gene deletion and constitutive expression of the pectate lyase gene 1 (MoPL1) lead to diminished virulence of Magnaporthe oryzae	12
Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides	12
Application of computational approaches to analyze metagenomic data	12
Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome	11
Screening of small molecules attenuating biofilm formation of Acinetobacter baumannii by inhibition of ompA promoter activity	11
Effect of exopolysaccharides of Paenibacillus polymyxa rhizobacteria on physiological and morphological variables of wheat seedlings	11
Recent Advances in CRISPR-Cas Technologies for Synthetic Biology	11
The inner membrane protein LapB is required for adaptation to cold stress in an LpxC-independent manner	11
Metaviromics coupled with phage-host identification to open the viral ‘black box’	11
Envelope-Stress Sensing Mechanism of Rcs and Cpx Signaling Pathways in Gram-Negative Bacteria	10
Diversity and composition of microbiota during fermentation of traditional Nuodeng ham	10
Distinct gut microbiotas between southern elephant seals and Weddell seals of Antarctica	10
Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil	10
Detection of colistin-resistant populations prior to antibiotic exposure in KPC-2-producing Klebsiella pneumoniae clinical isolates	9
The comparison of microbial communities in thyroid tissues from thyroid carcinoma patients	9
Transmissibility and pathogenicity of SARS-CoV-2 variants in animal models	9
Direct current exerts electricidal and bioelectric effects on Porphyromonas gingivalis biofilms partially via promoting oxidative stress and antibiotic transport	9
Coronavirus enzyme inhibitors-experimentally proven natural compounds from plants	9
Pikeienuella piscinae gen. nov., sp. nov., a novel genus in the family Rhodobacteraceae	9
Silver Nanoparticles Modified with Polygonatum sibiricum Polysaccharide Improve Biocompatibility and Infected Wound Bacteriostasis	8
T cell responses to SARS-CoV-2 in humans and animals	8
Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi	8
Activity of Lactobacillus crispatus isolated from vaginal microbiota against Mycobacterium tuberculosis	8

Ganoderma boninense mycelia for phytochemicals and secondary metabolites with antibacterial activity	8
Raman spectroscopy reveals alteration of spore compositions under different nutritional conditions in Lysinibacillus boronitolerans YS11	8
Manganese Transporter Proteins in Salmonella enterica serovar Typhimurium	8
Influence of Microbiota on Vaccine Effectiveness: “Is the Microbiota the Key to Vaccine-induced Responses?”	8
Biophysical characterization of antibacterial compounds derived from pathogenic fungi Ganoderma boninense	8
Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae	7
Effect of biostimulation and bioaugmentation on hydrocarbon degradation and detoxification of diesel-contaminated soil: a microcosm study	7
Omics-based microbiome analysis in microbial ecology: from sequences to information	7
The putative sensor histidine kinase VadJ coordinates development and sterigmatocystin production in Aspergillus nidulans	7
A mucin-responsive hybrid two-component system controls Bacteroides thetaiotaomicron colonization and gut homeostasis	7
Insights into the immune responses of SARS-CoV-2 in relation to COVID-19 vaccines	7
Effects of rehydration on physiological and transcriptional responses of a water-stressed rhizobium	7
Erratum to: Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)	7
Mst1/2-ALK promotes NLRP3 inflammasome activation and cell apoptosis during Listeria monocytogenes infection	7
Genetic linkage map construction and quantitative trait loci mapping of agronomic traits in Gloeostereum incarnatum	6
Potato tillage method is associated with soil microbial communities, soil chemical properties, and potato yield	6
Potential roles of condensin in genome organization and beyond in fission yeast	6
Antiviral effects of human placenta hydrolysate (Laennec®) against SARS-CoV-2 in vitro and in the ferret model	6
Characterization and bioefficacy of green nanosilver particles derived from fungicide-tolerant Tricho-fusant for efficient biocontrol of stem rot (Sclerotium rolfsii Sacc.) in groundnut (Arachis hypog	6
Vaginal Microbiome Dysbiosis is Associated with the Different Cervical Disease Status	6
Promoter exchange of the cryptic nonribosomal peptide synthetase gene for oligopeptide production in Aspergillus oryzae	6
CXCL12/CXCR4 Axis is Involved in the Recruitment of NK Cells by HMGB1 Contributing to Persistent Airway Inflammation and AHR During the Late Stage of RSV Infection	6
Middle East Respiratory Syndrome coronavirus vaccine development: updating clinical studies using platform technologies	6
Characterization of a novel phage depolymerase specific to Escherichia coli O157:H7 and biofilm control on abiotic surfaces	6
Salmonella Typhimurium ST313 isolated in Brazil revealed to be more invasive and inflammatory in murine colon compared to ST19 strains	6
Vibrio vulnificus PlpA facilitates necrotic host cell death induced by the pore forming MARTX toxin	6
Coordinated regulation of interferon and inflammasome signaling pathways by SARS-CoV-2 proteins	5
Epidemiological Characteristics of Norovirus Outbreaks in Shenyang from 2017 to 2021	5
Gut Lactobacillus and Probiotics Lactobacillus lactis/rhamnosis Ameliorate Liver Fibrosis in Prevention and Treatment	5
The β-Lactamase Activity at the Community Level Confers β-Lactam Resistance to Bloom-Forming Microcystis aeruginosa Cells	5
cAMP Activation of the cAMP Receptor Protein, a Model Bacterial Transcription Factor	5
Bacterial Crosstalk via Antimicrobial Peptides on the Human Skin: Therapeutics from a Sustainable Perspective	5
Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum	5
Characterization of staphylococcal endolysin LysSAP33 possessing untypical domain composition	5
Molecular characterization of the Saccharomycopsis fibuligera ATF genes, encoding alcohol acetyltransferase for volatile acetate ester formation	5
Rhizosphere Microbial Community and Metabolites of Susceptible and Resistant Tobacco Cultivars to Bacterial Wilt	5
The effect of the HRB linker of Newcastle disease virus fusion protein on the fusogenic activity	5
Function of Rhs proteins in porcine extraintestinal pathogenic Escherichia coli PCN033	4
Rab27b regulates extracellular vesicle production in cells infected with Kaposi’s sarcoma-associated herpesvirus to promote cell survival and persistent infection	4
Trans-acting regulators of ribonuclease activity	4
Microbial Interaction is Among the Key Factors for Isolation of Previous Uncultured Microbes	4
The “Cins” of Our Fathers: Rejuvenated Interest in Colicins to Combat Drug Resistance	4
Skin Deep: The Potential of Microbiome Cosmetics	4
miR-135b Aggravates Fusobacterium nucleatum-Induced Cisplatin Resistance in Colorectal Cancer by Targeting KLF13	4
Minor and major circRNAs in virus and host genomes	4
The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman	4
Incomplete autophagy promotes the replication of Mycoplasma hyopneumoniae	4
Agromyces laixinhei sp. nov. isolated from bat feces in China	4
Response of sheep rumen fermentation and microbial communities to feed infected with the endophyte Epichloë gansuensis as evaluated with rumen-simulating technology	4
CagL polymorphisms between East Asian and Western Helicobacter pylori are associated with different abilities to induce IL-8 secretion	4
Erratum to: Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of	4
Bacterial Sialic Acid Catabolism at the Host–Microbe Interface	4
The cytoplasmic loops of AgrC contribute to the quorum-sensing activity of Staphylococcus aureus	4
Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms	4
Comparison of Ganoderma boninense Isolate’s Aggressiveness Using Infected Oil Palm Seedlings	3
Comprehensive Analysis of Gut Microbiota Alteration in the Patients and Animal Models with Polycystic Ovary Syndrome	3
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.	3
Soil water content as a critical factor for stable bacterial community structure and degradative activity in maritime Antarctic soil	3
Functional and structural characterization of Deinococcus radiodurans R1 MazEF toxin-antitoxin system, Dr0416-Dr0417	3
Interaction between hypoviral-regulated fungal virulence factor laccase3 and small heat shock protein Hsp24 from the chestnut blight fungus Cryphonectria parasitica	3
Metformin Regulates Gut Microbiota Abundance to Suppress M2 Skewing of Macrophages and Colorectal Tumorigenesis in Mice	3
Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha	3
Isolation of a novel strain, Sphingorhabdus sp. YGSMI21 and characterization of its enantioselective epoxide hydrolase activity	3
Protective and pathogenic role of humoral responses in COVID-19	3
Flavobacterium psychrotrophum sp. nov. and Flavobacterium panacagri sp. nov., Isolated from Freshwater and Soil	3
Tubulysins are Essential for the Preying of Ciliates by Myxobacteria	3
Adenosylhomocysteinase like 1 interacts with nonstructural 5A and regulates hepatitis C virus propagation	3
Crystal structure of human LC8 bound to a peptide from Ebola virus VP35	3
The role of Jacalin-related lectin gene AOL_s00083g511 in the development and pathogenicity of the nematophagous fungus Arthrobotrys oligospora	3
Assembly of Bacterial Surface Glycopolymers as an Antibiotic Target	3
Heterologous Production and Structure Determination of a New Lanthipeptide Sinosporapeptin Using a Cryptic Gene Cluster in an Actinobacterium Sinosporangium siamense	3
Effects of Phosphorus-dissolving Dark Septate Endophytes on the Growth of Blueberry	3
Functional characterization of HigBA toxin-antitoxin system in an Arctic bacterium, Bosea sp. PAMC 26642	3
Bacterial Regulatory Mechanisms for the Control of Cellular Processes: Simple Organisms’ Complex Regulation	3
Extracellular products-mediated interspecific interaction between Pseudomonas aeruginosa and Escherichia coli	3
The putative polysaccharide synthase AfCps1 regulates Aspergillus fumigatus morphogenesis and conidia immune response in mouse bone marrow-derived macrophages	3
Meiotic prophase roles of Pds5 in recombination and chromosome condensation in budding yeast	3
Balancing Act of the Intestinal Antimicrobial Proteins on Gut Microbiota and Health	3
Furan-based Chalcone Annihilates the Multi-Drug-Resistant Pseudomonas aeruginosa and Protects Zebra Fish Against its Infection	3
The type II histidine triad protein HtpsC facilitates invasion of epithelial cells by highly virulent Streptococcus suis serotype 2	3

The Microbiome Matters: Its Impact on Cancer Development and Therapeutic Responses	3
MAPK Cascades in Plant Microbiota Structure and Functioning	2
Complete genetic dissection and cell type-specific replication of old world alphaviruses, getah virus (GETV) and sagiyama virus (SAGV)	2
Description of Fervidibacillus gen. nov. with Two Species, Fervidibacillus albus sp. nov., and Fervidibacillus halotolerans sp. nov., Isolated from Tidal Flat Sediments and Emendation of Misclassifice	2
Improved tolerance of recombinant Chlamydomonas rainhardtii with putative 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase from Pyropia yezoensis to nitrogen starvation	2
Whole genome and RNA sequencing of oral commensal bacterium Streptococcus anginosus subsp. anginosus with vancomycin tolerance	2
Alcohol dehydrogenase 1 and NAD(H)-linked methylglyoxal oxidoreductase reciprocally regulate glutathione-dependent enzyme activities in Candida albicans	2
Secretions from Serratia marcescens Inhibit the Growth and Biofilm Formation of Candida spp. and Cryptococcus neoformans	2
Application of Microbiome-Based Therapies in Chronic Respiratory Diseases	2
Reversible function of RapA with the C-terminus of RapC in Dictyostelium	2
Genome Sequencing Highlights the Plant Cell Wall Degrading Capacity of Edible Mushroom Stropharia rugosoannulata	2
Development of a Novel D-Lactic Acid Production Platform Based on Lactobacillus saerimneri TBRC 5746	2
Transcription Factors Tec1 and Tec2 Play Key Roles in the Hyphal Growth and Virulence of Mucor lusitanicus Through Increased Mitochondrial Oxidative Metabolism	2
Fungal Catastrophe of a Specimen Room: Just One Week is Enough to Eradicate Traces of Thousands of Animals	2
Fresh Washed Microbiota Transplantation Alters Gut Microbiota Metabolites to Ameliorate Sleeping Disorder Symptom of Autistic Children	2
Spot 42 RNA regulates putrescine catabolism in Escherichia coli by controlling the expression of puuE at the post-transcription level	2
Changpingibacter yushuensis gen. nov., sp. nov., isolated from fluvial sediment in Qinghai Tibet Plateau of China	2
Those Nematode-Trapping Fungi That are not Everywhere: Hints Towards Soil Microbial Biogeography	2
Vagococcus zengguangii sp. nov., isolated from yak faeces	2
Diversity and Dynamics of Marine Arenicolous Fungi in Three Seasides of the Korean Peninsula	2
Differences in seroprevalence between epicenter and non-epicenter areas of the COVID-19 outbreak in South Korea	2
The Fatal Role of Enterohaemorrhagic Escherichia coli Shiga Toxin-associated Extracellular Vesicles in Host Cells	2
Characterization of East-Asian Helicobacter pylori encoding Western EPIYA-ABC CagA	2
Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae	2
Structural and Functional Analyses of the Flavoprotein Disulfide Reductase FN0820 of Fusobacterium nucleatum	2
NEDD4 Regulated Pyroptosis Occurred from Co-infection between Influenza A Virus and Streptococcus pneumoniae	2
Flow cytometric monitoring of the bacterial phenotypic diversity in aquatic ecosystems	2
Molecular mechanism of Escherichia coli H10407 induced diarrhoea and its control through immunomodulatory action of bioactives from Simarouba amara (Aubl.)	2
Potent antibacterial and antibiofilm activities of TICbf-14, a peptide with increased stability against trypsin	2
Dynamics of Microbial Community Structure, Function and Assembly Mechanism with Increasing Stand Age of Slash Pine (Pinus elliottii) Plantations in Houtian Sandy Area, South China	2
Quantitative Analysis of RNA Polymerase Slippages for Production of P3N-PIPO Trans-frame Fusion Proteins in Potyvirids	2
Lactobacillus rhamnosus KBL2290 Ameliorates Gut Inflammation in a Mouse Model of Dextran Sulfate Sodium-Induced Colitis	2
Transcriptome-based Mining of the Constitutive Promoters for Tuning Gene Expression in Aspergillus oryzae	2