OOIR: Observatory of International Research

Papers

(The median citation count of International Journal of High Performance Computing Applications is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics	84
A survey of numerical linear algebra methods utilizing mixed-precision arithmetic	58
A terminology for in situ visualization and analysis systems	43
AMReX: Block-structured adaptive mesh refinement for multiphysics applications	42
GPU-accelerated molecular dynamics: State-of-art software performance and porting from Nvidia CUDA to AMD HIP	41
Scalability of high-performance PDE solvers	32
Tree-based convolutional neural networks for object classification in segmented satellite images	26
Efficient exascale discretizations: High-order finite element methods	24
A population data-driven workflow for COVID-19 modeling and learning	22
High-throughput virtual laboratory for drug discovery using massive datasets	22
Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models	20
ExaAM: Metal additive manufacturing simulation at the fidelity of the microstructure	19
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol	18
Highly efficient lattice Boltzmann multiphase simulations of immiscible fluids at high-density ratios on CPUs and GPUs through code generation	16
PeleC: An adaptive mesh refinement solver for compressible reacting flows	16
Enabling particle applications for exascale computing platforms	14
MFIX-Exa: A path toward exascale CFD-DEM simulations	14
Language models for the prediction of SARS-CoV-2 inhibitors	13
Comparing perturbation models for evaluating stability of neuroimaging pipelines	12
A parallel hierarchical blocked adaptive cross approximation algorithm	11
The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science	11
A study of vectorization for matrix-free finite element methods	11
Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources	11
Reducing communication in algebraic multigrid with multi-step node aware communication	11
Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF’s summit supercomputer	10

A survey of software implementations used by application codes in the Exascale Computing Project	10
EXAGRAPH: Graph and combinatorial methods for enabling exascale applications	9
Recovering single precision accuracy from Tensor Cores while surpassing the FP32 theoretical peak performance	8
Enhancing data locality of the conjugate gradient method for high-order matrix-free finite-element implementations	8
Selecting optimal SpMV realizations for GPUs via machine learning	8
Analytic performance modeling and analysis of detailed neuron simulations	8
Asynchronous computations for solving the acoustic wave propagation equation	7
Resilience and fault tolerance in high-performance computing for numerical weather and climate prediction	7
Co-design Center for Exascale Machine Learning Technologies (ExaLearn)	6
Digital transformation of droplet/aerosol infection risk assessment realized on “Fugaku” for the fight against COVID-19	6
Fitness evaluation reuse for accelerating GPU-based evolutionary induction of decision trees	6
MAGMA templates for scalable linear algebra on emerging architectures	6
Online data analysis and reduction: An important Co-design motif for extreme-scale computers	6
Data-driven global weather predictions at high resolutions	5
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics	5
CFD code adaptation to the FPGA architecture	5
A runtime based comparison of highly tuned lattice Boltzmann and finite difference solvers	5
A GPU-accelerated adaptive FSAI preconditioner for massively parallel simulations	5
Performance engineering for real and complex tall & skinny matrix multiplication kernels on GPUs	5
Reproducibility of parallel preconditioned conjugate gradient in hybrid programming environments	5
Evaluating asynchronous Schwarz solvers on GPUs	5
Parthenon—a performance portable block-structured adaptive mesh refinement framework	4
An elastic framework for ensemble-based large-scale data assimilation	4
Coupling of regional geophysics and local soil-structure models in the EQSIM fault-to-structure earthquake simulation framework	4
Task-parallel in situ temporal compression of large-scale computational fluid dynamics data	4
Highly scalable numerical simulation of coupled reaction–Diffusion systems with moving interfaces	4
Large-scale ab initio simulation of light–matter interaction at the atomic scale in Fugaku	4
Demystifying asynchronous I/O Interference in HPC applications	4
Implicit Hari–Zimmermann algorithm for the generalized SVD on the GPUs	4
A CUDA fast multipole method with highly efficient M2L far field evaluation	3
Free energy perturbation–based large-scale virtual screening for effective drug discovery against COVID-19	3
Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics	3
Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support	3
Special issue on advanced simulation in engineering	3
Increased space-parallelism via time-simultaneous Newton-multigrid methods for nonstationary nonlinear PDE problems	3
Large-Scale direct numerical simulations of turbulence using GPUs and modern Fortran	3
Parallel encryption of input and output data for HPC applications	3
Implementation and performance of Barnes-hut n-body algorithm on extreme-scale heterogeneous many-core architectures	3
Development of NCL equivalent serial and parallel python routines for meteorological data analysis	3
Accelerated execution via eager-release of dependencies in task-based workflows	3
Exascale models of stellar explosions: Quintessential multi-physics simulation	3
AutoParallel: Automatic parallelisation and distributed execution of affine loop nests in Python	3
HipBone: A performance-portable graphics processing unit-accelerated C++ version of the NekBone benchmark	3
A massively parallel time-domain coupled electrodynamics–micromagnetics solver	3
Massively parallel nodal discontinous Galerkin finite element method simulator for room acoustics	2
Understanding performance variability in standard and pipelined parallel Krylov solvers	2
Accelerating physics simulations with tensor processing units: An inundation modeling example	2
Energy efficiency of nonlinear domain decomposition methods	2
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action	2
Performance analysis of relaxation Runge–Kutta methods	2

Fast, good, and repeatable: Summations, vectorization, and reproducibility	2
Development of a hardware-accelerated simulation kernel for ultra-high vacuum with Nvidia RTX GPUs	2
Myths and legends in high-performance computing	2
Compressed basis GMRES on high-performance graphics processing units	2
TwoFold: Highly accurate structure and affinity prediction for protein-ligand complexes from sequences	2
Convolutional neural nets for estimating the run time and energy consumption of the sparse matrix-vector product	2
Co-design in the Exascale Computing Project	2
An analytical performance model of generalized hierarchical scheduling	2
A domain-specific language and matrix-free stencil code for investigating electronic properties of Dirac and topological materials	2
Black-box statistical prediction of lossy compression ratios for scientific data	2
Very fast finite element Poisson solvers on lower precision accelerator hardware: A proof of concept study for Nvidia Tesla V100	2