OOIR: Observatory of International Research

Papers

(The median citation count of International Journal of High Performance Computing Applications is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics	91
A survey of numerical linear algebra methods utilizing mixed-precision arithmetic	73
AMReX: Block-structured adaptive mesh refinement for multiphysics applications	56
GPU-accelerated molecular dynamics: State-of-art software performance and porting from Nvidia CUDA to AMD HIP	54
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol	34
Efficient exascale discretizations: High-order finite element methods	32
PeleC: An adaptive mesh refinement solver for compressible reacting flows	30
ExaAM: Metal additive manufacturing simulation at the fidelity of the microstructure	28
High-throughput virtual laboratory for drug discovery using massive datasets	28
A population data-driven workflow for COVID-19 modeling and learning	27
Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models	25
Enabling particle applications for exascale computing platforms	22
Highly efficient lattice Boltzmann multiphase simulations of immiscible fluids at high-density ratios on CPUs and GPUs through code generation	20
MFIX-Exa: A path toward exascale CFD-DEM simulations	18
A survey of software implementations used by application codes in the Exascale Computing Project	18
The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science	17
Recovering single precision accuracy from Tensor Cores while surpassing the FP32 theoretical peak performance	17
Language models for the prediction of SARS-CoV-2 inhibitors	15
Selecting optimal SpMV realizations for GPUs via machine learning	11
Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF’s summit supercomputer	11
EXAGRAPH: Graph and combinatorial methods for enabling exascale applications	10
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics	10
Enhancing data locality of the conjugate gradient method for high-order matrix-free finite-element implementations	9
Parthenon—a performance portable block-structured adaptive mesh refinement framework	9
Resilience and fault tolerance in high-performance computing for numerical weather and climate prediction	9

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support	8
Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics	8
Co-design Center for Exascale Machine Learning Technologies (ExaLearn)	7
Online data analysis and reduction: An important Co-design motif for extreme-scale computers	7
Demystifying asynchronous I/O Interference in HPC applications	7
Digital transformation of droplet/aerosol infection risk assessment realized on “Fugaku” for the fight against COVID-19	6
Coupling of regional geophysics and local soil-structure models in the EQSIM fault-to-structure earthquake simulation framework	6
Data-driven global weather predictions at high resolutions	6
Large-scale ab initio simulation of light–matter interaction at the atomic scale in Fugaku	6
A GPU-accelerated adaptive FSAI preconditioner for massively parallel simulations	6
Exascale models of stellar explosions: Quintessential multi-physics simulation	5
A runtime based comparison of highly tuned lattice Boltzmann and finite difference solvers	5
Black-box statistical prediction of lossy compression ratios for scientific data	5
Matrix-free approaches for GPU acceleration of a high-order finite element hydrodynamics application using MFEM, Umpire, and RAJA	5
Myths and legends in high-performance computing	5
Increased space-parallelism via time-simultaneous Newton-multigrid methods for nonstationary nonlinear PDE problems	5
Free energy perturbation–based large-scale virtual screening for effective drug discovery against COVID-19	5
An elastic framework for ensemble-based large-scale data assimilation	5
CFD code adaptation to the FPGA architecture	5
Dynamic spawning of MPI processes applied to malleability	5
HipBone: A performance-portable graphics processing unit-accelerated C++ version of the NekBone benchmark	4
Highly scalable numerical simulation of coupled reaction–Diffusion systems with moving interfaces	4
A massively parallel time-domain coupled electrodynamics–micromagnetics solver	4
Task-parallel in situ temporal compression of large-scale computational fluid dynamics data	4
Implicit Hari–Zimmermann algorithm for the generalized SVD on the GPUs	4
Large-Scale direct numerical simulations of turbulence using GPUs and modern Fortran	4
End-to-end GPU acceleration of low-order-refined preconditioning for high-order finite element discretizations	3
Accelerating physics simulations with tensor processing units: An inundation modeling example	3
Development of NCL equivalent serial and parallel python routines for meteorological data analysis	3
Very fast finite element Poisson solvers on lower precision accelerator hardware: A proof of concept study for Nvidia Tesla V100	3
Co-design in the Exascale Computing Project	3
Compressed basis GMRES on high-performance graphics processing units	3
Graph neural networks for detecting anomalies in scientific workflows	3
Massively parallel nodal discontinous Galerkin finite element method simulator for room acoustics	3
Parallel encryption of input and output data for HPC applications	3
Automatizing the creation of specialized high-performance computing containers	3
Accelerated execution via eager-release of dependencies in task-based workflows	3
Enabling efficient execution of a variational data assimilation application	2
Role-shifting threads: Increasing OpenMP malleability to address load imbalance at MPI and OpenMP	2
AI4IO: A suite of AI-based tools for IO-aware scheduling	2
Resiliency in numerical algorithm design for extreme scale simulations	2
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action	2
TwoFold: Highly accurate structure and affinity prediction for protein-ligand complexes from sequences	2
Point-block incomplete LU preconditioning with asynchronous iterations on GPU for multiphysics problems	2
Abisko: Deep codesign of an architecture for spiking neural networks using novel neuromorphic materials	2
Development of a hardware-accelerated simulation kernel for ultra-high vacuum with Nvidia RTX GPUs	2
An analytical performance model of generalized hierarchical scheduling	2
Versatile software-defined HPC and cloud clusters on Alps supercomputer for diverse workflows	2
Performance analysis of relaxation Runge–Kutta methods	2
Performance portability in a real world application: PHAST applied to Caffe	2

Mixed precision LU factorization on GPU tensor cores: reducing data movement and memory footprint	2
General framework for re-assuring numerical reliability in parallel Krylov solvers: A case of bi-conjugate gradient stabilized methods	2
Heterogeneous programming using OpenMP and CUDA/HIP for hybrid CPU-GPU scientific applications	2
A study on the performance of distributed training of data-driven CFD simulations	2