OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 42. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	317
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	217
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy	167
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	126
De novo individualized disease modules reveal the synthetic penetrance of genes and inform personalized treatment regimens	122
Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila	117
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser	111
A statistical physics approach for disease module detection	83
Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models	80
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements	78
Genome-wide profiling reveals functional interplay of DNA sequence composition, transcriptional activity, and nucleosome positioning in driving DNA supercoiling and helix destabilization in C. eleg	78
The genomic basis of evolutionary differentiation among honey bees	70
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	68
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization	67
De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data	66
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	66
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization	63
Polishing copy number variant calls on exome sequencing data via deep learning	63
A chromosome-scale epigenetic map of theHydragenome reveals conserved regulators of cell state	61
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells	61
Comparative genomics ofCryptosporidium parvumreveals the emergence of an outbreak-associated population in Europe and its spread to the United States	59
De novo reconstruction of satellite repeat units from sequence data	59
An efficient method to identify, date, and describe admixture events using haplotype information	57
Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change	56
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories	55

Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer	53
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription	53
An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride	52
Historical RNA expression profiles from the extinct Tasmanian tiger	51
Likelihood-based deconvolution of bulk gene expression data using single-cell references	49
Artificial intelligence and machine learning in cell-free-DNA-based diagnostics	48
Global compositional and functional states of the human gut microbiome in health and disease	48
Spatial Cellular Networks from omics data with SpaCeNet	47
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma	47
Density separation of petrous bone powders for optimized ancient DNA yields	46
Long-read genome assembly of the insect model organismTribolium castaneumreveals spread of satellite DNA in gene-rich regions by recurrent burst events	46
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences	45
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity	45
Transposable elements drive the evolution of metazoan zinc finger genes	44
Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling	44
Ligand-induced native G-quadruplex stabilization impairs transcription initiation	42
Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T	42
Challenges and considerations for reproducibility of STARR-seq assays	42