OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 39. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)

Article	Citations
Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells	499
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization	130
Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus	128
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	106
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	83
Lignature provides a curated resource of ligand induced transcriptomic signatures for signaling inference	77
An efficient method to identify, date, and describe admixture events using haplotype information	77
Simultaneous modeling of chromatin conformation changes from multiple single-cell interaction maps with ChromMovie	75
De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data	74
Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models	72
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy	71
Polishing copy number variant calls on exome sequencing data via deep learning	66
APOBEC3A drives deaminase mutagenesis in human gastric epithelium	64
A statistical physics approach for disease module detection	62
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	61
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization	60
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements	59
Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States	57
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	56
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser	55
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	53
Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila	52
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity	51
De novo reconstruction of satellite repeat units from sequence data	51
A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state	51

Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase	49
Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events	49
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription	49
An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride	46
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories	45
Transposable elements drive the evolution of metazoan zinc finger genes	45
Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change	42
Functional assays inDrosophilafacilitate classification of variants of uncertain significance associated with rare diseases	41
Corrigendum: A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes	41
Density separation of petrous bone powders for optimized ancient DNA yields	41
Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer	40
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma	40
The superpowers of imprinting control regions	40
Isoform- and pathway-specific regulation of post-transcriptional RNA processing in human cells	39