OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 37. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)

Article	Citations
Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells	607
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization	161
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	145
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization	121
A statistical physics approach for disease module detection	91
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	86
Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models	85
APOBEC3A drives deaminase mutagenesis in human gastric epithelium	80
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy	78
Simultaneous modeling of chromatin conformation changes from multiple single-cell interaction maps with ChromMovie	73
Lignature provides a curated resource of ligand-induced transcriptomic signatures for signaling inference	72
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	71
Influence of cis -regulatory elements on expression divergence in human segmental duplications	67
The Topological Regulatory Logic of noncoding RNA–mediated gene expression	64
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	60
Transposable element small RNAs and large RNAs in aging brains and implications in Huntington's and Parkinson's disease	58
Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus	58
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements	58
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser	58
De novo reconstruction of satellite repeat units from sequence data	57
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	56
Biobank-scale genotype similarity search and dynamic patient-matched cohort creation with GenoSiS	55
Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States	55
A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state	49
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity	48

De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data	48
Spatial Cellular Networks from omics data with SpaCeNet	46
The superpowers of imprinting control regions	45
Corrigendum: A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes	45
Density separation of petrous bone powders for optimized ancient DNA yields	44
Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer	44
Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase	42
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories	42
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma	42
An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride	40
Herbaria provide a valuable resource for obtaining informative mRNA	39
Global compositional and functional states of the human gut microbiome in health and disease	37