OOIR: Observatory of International Research

Papers

(The H4-Index of Genome Research is 39. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
The role of transposon activity in shapingcis-regulatory element evolution after whole-genome duplication	213
Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level	187
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy	129
De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data	98
Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution	91
Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing	89
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser	79
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization	73
Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila	71
Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection	70
A chromosome-scale epigenetic map of theHydragenome reveals conserved regulators of cell state	69
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization	66
Comparative genomics ofCryptosporidium parvumreveals the emergence of an outbreak-associated population in Europe and its spread to the United States	62
Polishing copy number variant calls on exome sequencing data via deep learning	60
De novo reconstruction of satellite repeat units from sequence data	58
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements	56
Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models	52
A statistical physics approach for disease module detection	51
An efficient method to identify, date, and describe admixture events using haplotype information	51
APOBEC3A drives deaminase mutagenesis in human gastric epithelium	51
De novo individualized disease modules reveal the synthetic penetrance of genes and inform personalized treatment regimens	50
An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride	49
Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer	49
Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase	49
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories	49

Functional assays inDrosophilafacilitate classification of variants of uncertain significance associated with rare diseases	49
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma	46
Historical RNA expression profiles from the extinct Tasmanian tiger	46
Artificial intelligence and machine learning in cell-free-DNA-based diagnostics	45
Spatial Cellular Networks from omics data with SpaCeNet	45
Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change	45
Density separation of petrous bone powders for optimized ancient DNA yields	45
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity	44
Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling	44
Long-read genome assembly of the insect model organismTribolium castaneumreveals spread of satellite DNA in gene-rich regions by recurrent burst events	44
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences	43
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription	43
Global compositional and functional states of the human gut microbiome in health and disease	41
Transposable elements drive the evolution of metazoan zinc finger genes	40
Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T	39
Nanopore strand-specific mismatch enables de novo detection of bacterial DNA modifications	39