Journal of Biomedical Optics

Papers
(The TQCC of Journal of Biomedical Optics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)
ArticleCitations
Fluorescence lifetime imaging microscopy: fundamentals and advances in instrumentation, analysis, and applications349
Deep learning in photoacoustic tomography: current approaches and future directions79
Terahertz radiation and the skin: a review76
Measurement of absorption and reduced scattering coefficients in Asian human epidermis, dermis, and subcutaneous fat tissues in the 400- to 1100-nm wavelength range for optical penetration depth and e58
Parametric imaging of attenuation by optical coherence tomography: review of models, methods, and clinical translation49
Comprehensive review of surgical microscopes: technology development and medical applications48
Photogrammetry-based stereoscopic optode registration method for functional near-infrared spectroscopy48
Beer–Lambert law for optical tissue diagnostics: current state of the art and the main limitations46
Smartphone-based imaging systems for medical applications: a critical review45
Cellular effects of terahertz waves42
Automatic detection of oral cancer in smartphone-based images using deep learning for early diagnosis40
Diffuse correlation spectroscopy measurements of blood flow using 1064 nm light40
Deep learning in photoacoustic imaging: a review38
Rise of Raman spectroscopy in neurosurgery: a review37
Laparoscopic system for simultaneous high-resolution video and rapid hyperspectral imaging in the visible and near-infrared spectral range33
Enhanced medical diagnosis for dOCTors: a perspective of optical coherence tomography31
Indocyanine green matching phantom for fluorescence-guided surgery imaging system characterization and performance assessment30
Toward accurate quantitative photoacoustic imaging: learning vascular blood oxygen saturation in three dimensions30
GPU implementation of photoacoustic short-lag spatial coherence imaging for improved image-guided interventions27
Recent innovations in fluorescence lifetime imaging microscopy for biology and medicine26
Optical manipulation: advances for biophotonics in the 21st century25
Fast pulsatile blood flow measurement in deep tissue through a multimode detection fiber23
Heartbeat OCE: corneal biomechanical response to simulated heartbeat pulsation measured by optical coherence elastography23
Validation of diffuse correlation spectroscopy measures of critical closing pressure against transcranial Doppler ultrasound in stroke patients23
Perspective on fast-evolving photoacoustic tomography23
Surface-enhanced Raman spectroscopy of tears: toward a diagnostic tool for neurodegenerative disease identification23
Saliva-based detection of COVID-19 infection in a real-world setting using reagent-free Raman spectroscopy and machine learning22
Mapping cisplatin-induced viscosity alterations in cancer cells using molecular rotor and fluorescence lifetime imaging microscopy22
Intraoperative molecular imaging clinical trials: a review of 2020 conference proceedings22
Interpretable deep learning approach for oral cancer classification using guided attention inference network21
Kernel Flow: a high channel count scalable time-domain functional near-infrared spectroscopy system20
Characterization of Mueller matrix elements for classifying human skin cancer utilizing random forest algorithm20
Mobile-based oral cancer classification for point-of-care screening20
Clinical evaluation of fever-screening thermography: impact of consensus guidelines and facial measurement location20
Label-free high-throughput photoacoustic tomography of suspected circulating melanoma tumor cells in patients in vivo20
Perspective on the increasing role of optical wearables and remote patient monitoring in the COVID-19 era and beyond19
Heartbeat optical coherence elastography: corneal biomechanics in vivo19
Low-cost, ultracompact handheld optical coherence tomography probe for in vivo oral maxillofacial tissue imaging19
Role of scattering and birefringence in phase retardation revealed by locus of Stokes vector on Poincaré sphere19
Machine learning for direct oxygen saturation and hemoglobin concentration assessment using diffuse reflectance spectroscopy18
Effective photoacoustic absorption spectrum for collagen-based tissue imaging18
Point-of-care, multispectral, smartphone-based dermascopes for dermal lesion screening and erythema monitoring18
Gastric cancer diagnosis using hyperspectral imaging with principal component analysis and spectral angle mapper18
HRVCam: robust camera-based measurement of heart rate variability18
Interferometric diffuse correlation spectroscopy improves measurements at long source–detector separation and low photon count rate18
Characterizing reduced scattering coefficient of normal human skin across different anatomic locations and Fitzpatrick skin types using spatial frequency domain imaging17
Review of successful pathways for regulatory approvals in open-field fluorescence-guided surgery17
Clinical evaluation of smartphone-based fluorescence imaging for guidance and monitoring of ALA-PDT treatment of early oral cancer17
High-power light-emitting diode array design and assembly for practical photodynamic therapy research17
MCX Cloud—a modern, scalable, high-performance and in-browser Monte Carlo simulation platform with cloud computing17
Intraoperative fluorescence perfusion assessment should be corrected by a measured subject-specific arterial input function17
Tutorial on laser speckle rheology: technology, applications, and opportunities17
Wave of single-impulse-stimulated fast initial dip in single vessels of mouse brains imaged by high-speed functional photoacoustic microscopy17
Deep feature loss to denoise OCT images using deep neural networks16
Oligonucleotide conjugated antibodies permit highly multiplexed immunofluorescence for future use in clinical histopathology16
Aptamer-based surface-enhanced resonance Raman scattering assay on a paper fluidic platform for detection of cardiac troponin I16
Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network16
Hemoglobin quantification in red blood cells via dry mass mapping based on UV absorption16
Machine learning to extract physiological parameters from multispectral diffuse reflectance spectroscopy16
Automatic diagnosis of macular diseases from OCT volume based on its two-dimensional feature map and convolutional neural network with attention mechanism15
Binary photoacoustic tomography for improved vasculature imaging15
Review of consensus test methods in medical imaging and current practices in photoacoustic image quality assessment15
Diagnosing 12 prostate needle cores within an hour of biopsy via open-top light-sheet microscopy15
Classification of imbalanced oral cancer image data from high-risk population15
Hollow core photonic crystal fiber-assisted Raman spectroscopy as a tool for the detection of Alzheimer’s disease biomarkers15
High signal-to-noise ratio reconstruction of low bit-depth optical coherence tomography using deep learning14
Wavelength- and irradiance-dependent changes in intracellular nitric oxide level14
Modulation frequency selection and efficient look-up table inversion for frequency domain diffuse optical spectroscopy14
Design and implementation of a portable colposcope Mueller matrix polarimeter13
Photoacoustics resolves species-specific differences in hemoglobin concentration and oxygenation13
Handheld optical coherence tomography for clinical assessment of dental plaque and gingiva13
Virtual scale function of gastrointestinal endoscopy for accurate polyp size estimation in real-time: a preliminary study12
Evaluation of the optical and biomechanical properties of bioengineered human skin generated with fibrin-agarose biomaterials12
Label-free imaging of lipid-rich biological tissues by mid-infrared photoacoustic microscopy12
Effects of lipid composition on photothermal optical coherence tomography signals12
Dose-response analysis of microvasculature changes in the murine fetal brain and the maternal extremities due to prenatal ethanol exposure12
Effects of patient-specific treatment planning on eligibility for photodynamic therapy of deep tissue abscess cavities: retrospective Monte Carlo simulation study12
Quantitative evaluation of frequency domain measurements in high density diffuse optical tomography12
Image-guided Raman spectroscopy probe-tracking for tumor margin delineation12
Deep learning in macroscopic diffuse optical imaging12
Separation of color channels from conventional colonoscopy images improves deep neural network detection of polyps12
Handheld macroscopic Raman spectroscopy imaging instrument for machine-learning-based molecular tissue margins characterization12
Rapid tissue oxygenation mapping from snapshot structured-light images with adversarial deep learning11
Looking for a perfect match: multimodal combinations of Raman spectroscopy for biomedical applications11
Photoacoustic image improvement based on a combination of sparse coding and filtering11
Measuring hemoglobin spectra: searching for carbamino-hemoglobin11
Deep learning methods hold promise for light fluence compensation in three-dimensional optoacoustic imaging11
Fluorescence detection of deep intramucosal cancer excited by green light for photodynamic diagnosis using protoporphyrin IX induced by 5-aminolevulinic acid: an ex vivo study11
Estimation of skin microcirculatory hemoglobin oxygen saturation and red blood cell tissue fraction using a multispectral snapshot imaging system: a validation study11
Deep learning-level melanoma detection by interpretable machine learning and imaging biomarker cues11
Beyond 2D: effects of photobiomodulation in 3D tissue-like systems11
Patient-derived cancer organoid tracking with wide-field one-photon redox imaging to assess treatment response11
Advantages of Fresnel biprism-based digital holographic microscopy in quantitative phase imaging11
Rapid assessment of breast tumor margins using deep ultraviolet fluorescence scanning microscopy11
Unbiased corneal tissue analysis using Gabor-domain optical coherence microscopy and machine learning for automatic segmentation of corneal endothelial cells10
Quantitative spectral quality assessment technique validated using intraoperative in vivo Raman spectroscopy measurements10
Automated classification of coronary plaque calcification in OCT pullbacks with 3D deep neural networks10
High-speed axially swept light sheet microscopy using a linear MEMS phased array for isotropic resolution10
Development of oral cancer tissue-mimicking phantom based on polyvinyl chloride plastisol and graphite for terahertz frequencies10
High-throughput single-cell live imaging of photobiomodulation with multispectral near-infrared lasers in cultured T cells10
Anthropomorphic optical phantom of the neonatal thorax: a key tool for pulmonary studies in preterm infants10
Characterization of retinal biomechanical properties using Brillouin microscopy10
Review of in vivo optical molecular imaging and sensing from x-ray excitation10
Photodynamic therapy dosimetry using multiexcitation multiemission wavelength: toward real-time prediction of treatment outcome10
Terahertz spectroscopy of diabetic and non-diabetic human blood plasma pellets10
Photoacoustic topography through an ergodic relay for functional imaging and biometric application in vivo10
Constructing a portable optical polarimetry probe for in-vivo skin cancer detection10
Human embryonic stem cell classification: random network with autoencoded feature extractor10
Multicontrast investigation of in vivo wildtype zebrafish in three development stages using polarization-sensitive optical coherence tomography9
Systematic stability testing of insulins as representative biopharmaceuticals using ATR FTIR-spectroscopy with focus on quality assurance9
Live mechanistic assessment of localized cardiac pumping in mammalian tubular embryonic heart9
Multispectral singlet oxygen and photosensitizer luminescence dosimeter for continuous photodynamic therapy dose assessment during treatment9
Multiresolution nondestructive 3D pathology of whole lymph nodes for breast cancer staging9
Detection of live breast cancer cells in bright-field microscopy images containing white blood cells by image analysis and deep learning9
Photoacoustic imaging on its way toward clinical utility: a tutorial review focusing on practical application in medicine9
In vivo microscopy as an adjunctive tool to guide detection, diagnosis, and treatment9
Multi-laboratory performance assessment of diffuse optics instruments: the BitMap exercise9
Comparison of different spectral cameras for image-guided organ transplantation9
Open-sourced Raman spectroscopy data processing package implementing a baseline removal algorithm validated from multiple datasets acquired in human tissue and biofluids9
Extracellular pH affects the fluorescence lifetimes of metabolic co-factors9
Laser-induced elastic wave classification: thermoelastic versus ablative regimes for all-optical elastography applications9
Domain adaptation for robust workload level alignment between sessions and subjects using fNIRS9
Scalable and accessible personalized photodynamic therapy optimization with FullMonte and PDT-SPACE8
Photoacoustic imaging of posterior periodontal pocket using a commercial hockey-stick transducer8
Investigation of the quantification of hemoglobin and cytochrome-c-oxidase in the exposed cortex with near-infrared hyperspectral imaging: a simulation study8
Development of a Monte Carlo-wave model to simulate time domain diffuse correlation spectroscopy measurements from first principles8
Deep learning-based method to accurately estimate breast tissue optical properties in the presence of the chest wall8
Dynamic SWIR imaging near the 1950-nm water absorption band for caries lesion diagnosis8
SIMPA: an open-source toolkit for simulation and image processing for photonics and acoustics8
Perspective on the integration of optical sensing into orthopedic surgical devices8
Portable low-cost macroscopic mapping system for all-optical cardiac electrophysiology8
Compact and ultracompact spectral imagers: technology and applications in biomedical imaging8
Terahertz spectroscopy analysis of human corneal sublayers8
Polydimethylsiloxane tissue-mimicking phantoms with tunable optical properties8
Metabolic mapping of glioblastoma stem cells reveals NADH fluxes associated with glioblastoma phenotype and survival8
Research on the combination of color channels in heart rate measurement based on photoplethysmography imaging8
Sub-millimeter endoscope demonstrates feasibility of in vivo reflectance imaging, fluorescence imaging, and cell collection in the fallopian tubes8
Development of a drug–device combination for fluorescence-guided surgery in neuroendocrine tumors8
Real-time video-rate perfusion imaging using multi-exposure laser speckle contrast imaging and machine learning8
Multi-reference global registration of individual A-lines in adaptive optics optical coherence tomography retinal images7
Focused x-ray luminescence imaging system for small animals based on a rotary gantry7
Image-guided Raman spectroscopy navigation system to improve transperineal prostate cancer detection. Part 1: Raman spectroscopy fiber-optics system and in situ tissue characterization7
Evaluation of visible diffuse reflectance spectroscopy in liver tissue: validation of tissue saturations using extracorporeal circulation7
Non-invasive blood glucose sensing by machine learning of optic fiber-based speckle pattern variation7
Detection of hypoxia by near-infrared spectroscopy and pulse oximetry: a comparative study7
Special Section Guest Editorial: Advances in Terahertz Biomedical Science and Applications7
Diffuse reflectance spectroscopy to monitor murine colorectal tumor progression and therapeutic response7
Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications7
First-in-human pilot study of snapshot multispectral endoscopy for early detection of Barrett’s-related neoplasia7
MCCL: an open-source software application for Monte Carlo simulations of radiative transport7
Ultralow energy photoacoustic microscopy for ocular imaging in vivo7
Simultaneous measurements of tissue blood flow and oxygenation using a wearable fiber-free optical sensor7
Transcutaneous monitoring of hemoglobin derivatives during methemoglobinemia in rats using spectral diffuse reflectance7
Modeling toolchain for realistic simulation of photoacoustic data acquisition7
High-throughput label-free cell detection and counting from diffraction patterns with deep fully convolutional neural networks7
First in patient assessment of brain tumor infiltrative margins using simultaneous time-resolved measurements of 5-ALA-induced PpIX fluorescence and tissue autofluorescence7
Neural network model assisted Fourier ptychography with Zernike aberration recovery and total variation constraint7
Prediction of optimal contrast times post-imaging agent administration to inform personalized fluorescence-guided surgery7
Small molecule kinase inhibitors enhance aminolevulinic acid-mediated protoporphyrin IX fluorescence and PDT response in triple negative breast cancer cell lines7
Virtual organelle self-coding for fluorescence imaging via adversarial learning7
Looking deep inside tissue with photoacoustic molecular probes: a review7
Deep-learning approach for automated thickness measurement of epithelial tissue and scab using optical coherence tomography7
Tunable blood oxygenation in the vascular anatomy of a semi-anthropomorphic photoacoustic breast phantom7
Dual-modality optical coherence tomography and frequency-domain fluorescence lifetime imaging microscope system for intravascular imaging7
Registration of polarimetric images for in vivo skin diagnostics7
Hyperspectral imaging for tumor segmentation on pigmented skin lesions7
Applications of compressive sensing in spatial frequency domain imaging7
Normalization of optical fluence distribution for three-dimensional functional optoacoustic tomography of the breast7
Quantifying the effects of biopsy fixation and staining panel design on automatic instance segmentation of immune cells in human lupus nephritis7
Real-time visualization of renal microperfusion using laser speckle contrast imaging7
MCDataset: a public reference dataset of Monte Carlo simulated quantities for multilayered and voxelated tissues computed by massively parallel PyXOpto Python package7
Monte Carlo-based data generation for efficient deep learning reconstruction of macroscopic diffuse optical tomography and topography applications7
Depth distributions of bacteria for the Pseudomonas aeruginosa-infected burn wounds treated by methylene blue-mediated photodynamic therapy in rats: effects of additives to photosensitizer6
Hyperspectral and multispectral image processing for gross-level tumor detection in skin lesions: a systematic review6
Implantable sensor for local Cherenkov-excited luminescence imaging of tumor pO2 during radiotherapy6
Empirical method for rapid quantification of intrinsic fluorescence signals of key metabolic probes from optical spectra measured on tissue-mimicking turbid medium6
Investigation of photoacoustic tomography reconstruction with a limited view from linear array6
Incorporating early and late-arriving photons to improve the reconstruction of cerebral hemodynamic responses acquired by time-resolved near-infrared spectroscopy6
Multiple illumination learned spectral decoloring for quantitative optoacoustic oximetry imaging6
Label-free detection of brain tumors in a 9L gliosarcoma rat model using stimulated Raman scattering-spectroscopic optical coherence tomography6
Feasibility of combined optical coherence tomography and autofluorescence imaging for visualization of needle biopsy placement6
Surface kinematic and depth-resolved analysis of human vocal folds in vivo during phonation using optical coherence tomography6
BlenderPhotonics: an integrated open-source software environment for three-dimensional meshing and photon simulations in complex tissues6
Dual short wavelength infrared transillumination/reflectance mode imaging for caries detection6
High frame rate (∼3 Hz) circular photoacoustic tomography using single-element ultrasound transducer aided with deep learning6
Mueller-matrix imaging polarimetry elevated by wavelet decomposition and polarization-singular processing for analysis of specific cancerous tissue pathology6
Accurate and early prediction of the wound healing outcome of burn injuries using the wavelet Shannon entropy of terahertz time-domain waveforms6
Detection of localized pulsatile motion in cutaneous microcirculation by speckle decorrelation optical coherence tomography angiography6
Deep learning on reflectance confocal microscopy improves Raman spectral diagnosis of basal cell carcinoma6
Imaging hydroxyapatite in sub-retinal pigment epithelial deposits by fluorescence lifetime imaging microscopy with tetracycline staining6
Globally deployed COVID-19 fever screening devices using infrared thermographs consistently normalize high readings to afebrile range6
Three-dimensional vascular and metabolic imaging using inverted autofluorescence6
Using Fourier ptychography microscopy to achieve high-resolution chromosome imaging: an initial evaluation6
Imaging of enthesitis by an LED-based photoacoustic system6
Polarimetric imaging for cervical pre-cancer screening aided by machine learning: ex vivo studies6
Skin optical properties in the obese and their relation to body mass index: a review6
Experimental validation of a recently developed model for single-fiber reflectance spectroscopy6
Optical fibers for endoscopic high-power Er:YAG laserosteotomy6
Terahertz high-resolution spectroscopy of thermal decomposition gas products of diabetic and non-diabetic blood plasma and kidney tissue pellets6
Graphics-processing-unit-accelerated Monte Carlo simulation of polarized light in complex three-dimensional media6
Imaging sub-diffuse optical properties of cancerous and normal skin tissue using machine learning-aided spatial frequency domain imaging6
Quantifying tissue optical properties of human heads in vivo using continuous-wave near-infrared spectroscopy and subject-specific three-dimensional Monte Carlo models6
High-resolution three-dimensional blood flow tomography in the subdiffuse regime using laser speckle contrast imaging6
Multimodal 3D photoacoustic remote sensing and confocal fluorescence microscopy imaging6
History of Monte Carlo modeling of light transport in tissues using mcml.c6
Dual-emissive, oxygen-sensing boron nanoparticles quantify oxygen consumption rate in breast cancer cells6
Quantifying optical anisotropy in soft tissue membranes using Mueller matrix imaging6
Multispectral snapshot imaging of skin microcirculatory hemoglobin oxygen saturation using artificial neural networks trained on in vivo data6
Enhancement of in vivo cardiac photoacoustic signal specificity using spatiotemporal singular value decomposition6
Image-guided Raman spectroscopy navigation system to improve transperineal prostate cancer detection. Part 2: in-vivo tumor-targeting using a classification model combining spectral and MRI-radiomics 6
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