Journal of the American Medical Informatics Association

Article	Citations
Multi-faceted analysis and prediction for the outbreak of pediatric respiratory syncytial virus	383
Evaluating resources composing the PheMAP knowledge base to enhance high-throughput phenotyping	288
CARE-SD: classifier-based analysis for recognizing provider stigmatizing and doubt marker labels in electronic health records: model development and validation	282
All of whom? Limitations encountered using All of Us Researcher Workbench in a Primary Care residents secondary data analysis research training block	189
Genetic data normalization for genomic medicine: a Fast Healthcare Interoperability Resources Genomics reference implementation	174
Challenges using electronic health records to support unhealthy alcohol use screening and intervention in primary care practices in the Pacific Northwest	160
Interpretable machine learning for identifying ICU readmission risk in subgroups with probabilistic rules	157
Uncovering hidden trends: identifying time trajectories in risk factors documented in clinical notes and predicting hospitalizations and emergency department visits during home health care	155
“Goldmine” or “big mess”? An interview study on the challenges of designing, operating, and ensuring the durability of Clinical Data Warehouses in France and Belgium	154
Building an allergy reconciliation module to eliminate allergy discrepancies in electronic health records	135
Enhancing patient representation learning with inferred family pedigrees improves disease risk prediction	134
Designing visual hierarchies for the communication of health data	130
Identifying key user experience and technical features for sustained use of unguided chatbots for health-related behavior change: a systematic review	126
Systematic review of foundation models for structured electronic health records	126
The added value of text from Dutch general practitioner notes in predictive modeling	125
What did you do to avoid the climate disaster? A call to arms for health informatics	122
Utilizing patient-nurse verbal communication in building risk identification models: the missing critical data stream in home healthcare	115
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions	115
Identifying family structures from obituaries and matching them to patients in an electronic heath record	98
Compliance and factuality of large language models for clinical research document generation	95
Characterization and Validation of EHR Computable Phenotypes for Long COVID Using Patient-Reported Symptoms: Insights from the Nationwide RECOVER Program	89
Transparent deep learning to identify autism spectrum disorders (ASD) in EHR using clinical notes	89
A framework for understanding label leakage in machine learning for health care	87
Self-supervised machine learning using adult inpatient data produces effective models for pediatric clinical prediction tasks	79
Clickbusters letter response	78

Reply to Layne et al.’s Letter to the Editor	76
Tablet distribution to veterans: an opportunity to increase patient portal adoption and use	75
Growth curve modeling of virtual events and online engagement in a palliative care peer support online health community for adolescents and young adults	74
CDEMapper: enhancing National Institutes of Health common data element use with large language models	73
Regulation of artificial intelligence in healthcare: Clinical Laboratory Improvement Amendments (CLIA) as a model	69
Retrospective analysis of the impact of electronic medical record alerts on low value care in a pediatric hospital	68
Implementation of a clinical decision support tool for hypertension in a rural health system	67
Reformulating patient stratification for targeting interventions by accounting for severity of downstream outcomes resulting from disease onset: a case study in sepsis	65
Comparing penalization methods for linear models on large observational health data	64
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records	64
Foundational domains and competencies for baccalaureate health informatics education	63
Letter to the editors in response to “Leveraging artificial intelligence to summarize abstracts in lay language for increasing research accessibility and transparency”	63
Efficacy of the mLab App: a randomized clinical trial for increasing HIV testing uptake using mobile technology	61
Data-driven automated classification algorithms for acute health conditions: applying PheNorm to COVID-19 disease	59
Association of physician burnout with perceived EHR work stress and potentially actionable factors	59
Long-term care plan recommendation for older adults with disabilities: a bipartite graph transformer and self-supervised approach	59
Electronic health record-supported implementation of an evidence-based pathway for perioperative surgical care	58
RefAI: a GPT-powered retrieval-augmented generative tool for biomedical literature recommendation and summarization	57
Distributed, immutable, and transparent biomedical limited data set request management on multi-capacity network	57
Variations in digital health literacy for pediatric caregivers of hospitalized children: implications for digital health equity	56
The incremental design of a machine learning framework for medical records processing	54
Developing electronic clinical quality measures to assess the cancer diagnostic process	54
Preparing for the bedside—optimizing a postpartum depression risk prediction model for clinical implementation in a health system	54
Accuracy of ICD-10-CM encounter diagnoses from health records for identifying self-harm events	53
Using automated methods to detect safety problems with health information technology: a scoping review	52
Predicting mortality in hospitalized influenza patients: integration of deep learning-based chest X-ray severity score (FluDeep-XR) and clinical variables	51
Learning competing risks across multiple hospitals: one-shot distributed algorithms	50
Comparison of phenomic profiles in the All of Us Research Program against the US general population and the UK Biobank	48
Privacy-enhancing sequential learning under heterogeneous selection bias in multi-site electronic health records data	48
Generative AI in orthopedics: an explainable deep few-shot image augmentation pipeline for plain knee radiographs and Kellgren-Lawrence grading	47
Potential bias and lack of generalizability in electronic health record data: reflections on health equity from the National Institutes of Health Pragmatic Trials Collaboratory	47
myAURA : a personalized health library for epilepsy management via knowledge graph sparsification and visualization	47
Prediction of multiclass surgical outcomes in glaucoma using multimodal deep learning based on free-text operative notes and structured EHR data	47
Returning value to the community through the All of Us Research Program Data Sandbox model	46
Comparative effectiveness of generic commercial versus locally customized clinical decision support tools to reduce prescription of nonsteroidal anti-inflammatory drugs for patients with heart failure	46
Characterizing variability of electronic health record-driven phenotype definitions	46
Clinical decision support malfunctions related to medication routes: a case series	45
AMIA’s code of professional and ethical conduct 2022	45
Automatically pre-screening patients for the rare disease aromatic l-amino acid decarboxylase deficiency using knowledge engineering, natural language processing, and machine learning on a	44
JAMIA at 30: looking back and forward	44
Deploying a national clinical text processing infrastructure	44
Variation in pediatric and adolescent electronic health data sharing practices under the 21st Century Cures Act	43
Constructing knowledge: the role of AI in medical learning	43
Impact of announced wait time information on emergency department overcrowding mitigation: a simulation study	43
Exploring home healthcare clinicians’ needs for using clinical decision support systems for early risk warning	43
Deep learning algorithms to detect diabetic kidney disease from retinal photographs in multiethnic populations with diabetes	43
Dobbs and the future of health data privacy for patients and healthcare organizations	42
Development and validation of a multi-stage self-supervised learning model for optical coherence tomography image classification	42
Bridging the gap in author names: building an enhanced author name dataset for biomedical literature system	42
Patient and researcher stakeholder preferences for use of electronic health record data: a qualitative study to guide the design and development of a platform to honor patient preferences	42

Equity implications of extended reality technologies for health and procedural anxiety: a systematic review and implementation-focused framework	42
A national survey of clinical informatics educational opportunities in United States medical schools	42
Machine learning-based prediction models in medical decision-making in kidney disease: patient, caregiver, and clinician perspectives on trust and appropriate use	41
From use cases to infrastructure: a cross-institutional survey of priorities in data-driven biomedical research	41
Can large language models provide secondary reliable opinion on treatment options for dermatological diseases?	40
High-performance automated abstract screening with large language model ensembles	40
AI in health: keeping the human in the loop	40
Correction to: Association between state payment parity policies and telehealth usage at community health centers during COVID-19	39
Identifying stigmatizing and positive/preferred language in obstetric clinical notes using natural language processing	39
A communication-efficient federated learning algorithm to assess racial disparities in post-transplantation survival time	39
Knowledge infrastructure: a priority to accelerate workflow automation in health care	38
Seeing things the same way: perspectives and lessons learned from research-design collaborations	38
The value of parental medical records for the prediction of diabetes and cardiovascular disease: a novel method for generating and incorporating family histories	38
Acute myocardial infarction prognosis prediction with reliable and interpretable artificial intelligence system	38
Informatics innovation to provide return of value to participant communities in the All of Us Research Program	38
Performance drift in a mortality prediction algorithm among patients with cancer during the SARS-CoV-2 pandemic	37
Transfer-learning on federated observational healthcare data for prediction models using Bayesian sparse logistic regression with informed priors	37
A span-based model for extracting overlapping PICO entities from randomized controlled trial publications	36
Life events extraction from healthcare notes for veteran acute suicide risk prediction	36
Digital interdependence: impact of work spillover during clinical team handoffs	36
Diagnostic accuracy differences in detecting wound maceration between humans and artificial intelligence: the role of human expertise revisited	36
A call for better validation of opioid overdose risk algorithms	36
Real world performance of the 21st Century Cures Act population-level application programming interface	36
Disparities in seizure outcomes revealed by large language models	35
The substance-exposed birthing person-infant/child dyad and health information exchange in the United States	35
Toward digital twins in the intensive care unit: a medication management case study	35
Targeted messaging to improve the adoption of clinical decision support for prescription drug monitoring program use	34
CUI-Curate: a GraphRAG-based framework for automated clinical concept curation for NLP applications	34
Supporting clinical reasoning through visual summarization and presentation of patient data: a systematic review	34
A standards-based approach to digital health research: implementing the people heart study	34
Do patients who read visit notes on the patient portal have a higher rate of “loop closure” on diagnostic tests and referrals in primary care? A retrospective cohort study	33
Reducing diagnostic delays in acute hepatic porphyria using health records data and machine learning	33
Synthesized annotation guidelines are knowledge-lite boosters for clinical information extraction	33
Using electronic health record audit log data for research: insights from early efforts	32
PMC-LLaMA: toward building open-source language models for medicine	32
Leveraging explainable artificial intelligence to optimize clinical decision support	31
Evaluating the validity of the nursing statements algorithmically generated based on the International Classifications of Nursing Practice for respiratory nursing care using large language models	31
Derivation and validation of an algorithm for maternal–child linkage in electronic health records	31
Correction to: De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository	31
Equitable community-based participatory research engagement with communities of color drives All of Us Wisconsin genomic research priorities	31
Perspectives on the role of industry in informatics research and authorship	31
A marker-based neural network system for extracting social determinants of health	31
Development of a robust corpus for automated evaluation of online health information in Chinese using the DISCERN scale	31
A novel hyperparameter search approach for accuracy and simplicity in disease prediction risk scoring	30
Human-Large Language Model collaboration for systematic ontology updates: a case study in the domain of dietary lifestyle	30
Electronic health record “gag clauses” and the prevalence of screenshots in peer-reviewed literature	30
Keeping synthetic patients on track: feedback mechanisms to mitigate performance drift in longitudinal health data simulation	30
Computational simulation of the potential improvement in clinical outcomes of cardiovascular diseases with the use of a personalized predictive medicine approach	30
Correction to: Deep learning algorithms to detect diabetic kidney disease from retinal photographs in multiethnic populations with diabetes	30
Local large language models for privacy-preserving accelerated review of historic echocardiogram reports	29
Current methods for analyzing time-series patient-generated health data to assess treatment response: a scoping review	29
LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction	29
Evidence-based medicine on FHIR augments the standards-based approach to digital health research	29
Predicting treatment retention in medication for opioid use disorder: a machine learning approach using NLP and LLM-derived clinical features	28
Electronic patient-reported outcome measures for triaging and scheduling outpatient appointments: a systematic review and meta-analysis	28
SNOMED CT entity linking challenge	28
Translating evidence into practice: adapting TrialGPT for real-world clinical trial eligibility screening	28
Communicating research findings as a return of value to All of Us Research Program participants: insights from staff at Federally Qualified Health Centers	28
Envisioning the future of primary care: intervention strategies to support patient-centered communication feedback technology	28
GAT-BiGRU: explainable multi-task temporal graph learning for glucose forecasting, hypoglycemia risk, and counterfactual insulin adjustment	28
Dementia and electronic health record phenotypes: a scoping review of available phenotypes and opportunities for future research	28
Optimising pain identification in resource-limited emergency departments using transfer learning and fine-tuned language models	28
VIEWER: an extensible visual analytics framework for enhancing mental healthcare	27
Pivotal trial of a deep-learning-based retinal biomarker (Reti-CVD) in the prediction of cardiovascular disease: data from CMERC-HI	27
Harnessing the potential of large language models in medical education: promise and pitfalls	27
Enabling inclusive systematic reviews: incorporating preprint articles with large language model-driven evaluations	27
Automated detection of stigmatizing language in Electronic Health Records (EHRs) using a multi-stage transfer learning approach	27
Translating machine learning predictions into meaningful risk estimates to support clinical decisions: a post hoc analysis of chronic obstructive pulmonary disease adverse outcomes using unified auto	27
Transport-based transfer learning on Electronic Health Records: application to detection of treatment disparities	27
Using event logs to observe interactions with electronic health records: an updated scoping review shows increasing use of vendor-derived measures	27
Large language models for biomedicine: foundations, opportunities, challenges, and best practices	26
Correction to: In with the old, in with the new: machine learning for time to event biomedical research	26
Patient attitudes toward ambient artificial intelligence scribes in clinical care: insights from a cross-sectional study	26
LCD benchmark: long clinical document benchmark on mortality prediction for language models	26
Promoting interoperability between SNOMED CT and ICD-11: lessons learned from the pilot project mapping between SNOMED CT and the ICD-11 Foundation	26
Contextualizing key principles to promote a justice-oriented informatics research agenda: proceedings and reflections from an American Medical Informatics Association workshop	26
Machine learning classification of diagnostic accuracy in pathologists interpreting breast biopsies	25
The potential and limitations of large language models in identification of the states of motivations for facilitating health behavior change	25
Utilization patterns and efficiency gains from use of a fully EHR-integrated COVID-19 self-triage and self-scheduling tool: a retrospective analysis	25
Predictive performance precision analysis in medicine: identification of low-confidence predictions at patient and profile levels (MED3pa I)	25

Markov modeling for cost-effectiveness using federated health data network	25
Large language models accurately identify immunosuppression in intensive care unit patients	25
Machine learning-based infection diagnostic and prognostic models in post-acute care settings: a systematic review	25
Comprehension, utility, and preferences of prostate cancer survivors for visual timelines of patient-reported outcomes co-designed for limited graph literacy: meters and emojis over comics	25
Partnering with patients and families living with chronic conditions to coproduce diagnostic safety through OurDX: a previsit online engagement tool	24
Machine learning based prediction of medication adherence in heart failure using large electronic health record cohort with linkages to pharmacy-fill and neighborhood-level data	24
Prediction of postoperative infections by strategic data imputation and explainable machine learning	24
Enterprise-wide simultaneous deployment of ambient scribe technology: lessons learned from an academic health system	24
CPGPrompt: translating clinical guidelines into large language model-executable decision support	24
Development of electronic health record based algorithms to identify individuals with diabetic retinopathy	23
Generating colloquial radiology reports with large language models	23
Search still matters: information retrieval in the era of generative AI	23
Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model	23
Leveraging large language models to foster equity in healthcare	23
Automatic segmentation of atrial fibrillation and flutter in single-lead electrocardiograms by self-supervised learning and Transformer architecture	23
Dynamic prediction of work status for workers with occupational injuries: assessing the value of longitudinal observations	22
Selective prediction for extracting unstructured clinical data	22
Nonexercise machine learning models for maximal oxygen uptake prediction in national population surveys	22
Leveraging artificial intelligence to summarize abstracts in lay language for increasing research accessibility and transparency	22
BioInstruct: instruction tuning of large language models for biomedical natural language processing	22
Applying anti-racist approaches to informatics: a new lens on traditional frames	22
Integrating human-centered design in public health data dashboards: lessons from the development of a data dashboard of sexually transmitted infections in New York State	22
Trading-off privacy and utility: the Washington State experience assessing the performance of a public health digital exposure notification system for coronavirus disease 2019	21
PheMIME: an interactive web app and knowledge base for phenome-wide, multi-institutional multimorbidity analysis	21
“I don’t think it should take you three days to tell me my baby is dead.” A case of fetal demise: unintended consequences of immediate release of information	21
Does it save me money? The economic impact of mobile health interventions on medical expenditure of diabetic patients	21
A scoping review of models to identify transgender patients in electronic health records	21
Evaluation of the impact of defining observable time in real-world data on outcome incidence	21
A randomized controlled trial of generic and localized MedlinePlus-based information resources for hard-to-reach urban Hispanic community	21
The impact of the COVID-19 pandemic on daily rhythms	20
Translating and evaluating historic phenotyping algorithms using SNOMED CT	20
Assessing the impact of privacy-preserving record linkage on record overlap and patient demographic and clinical characteristics in PCORnet®, the National Patient-Centered Clinical Research Network	20
Comparison of six natural language processing approaches to assessing firearm access in Veterans Health Administration electronic health records	19
Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review	19
Transforming and evaluating the UK Biobank to the OMOP Common Data Model for COVID-19 research and beyond	19
Large language models for full-text methods assessment: a case study on mediation analysis	19
Visualizing machine learning-based predictions of postpartum depression risk for lay audiences	19
Combining uncertainty-aware predictive modeling and a bedtimeSmart Snackintervention to prevent nocturnal hypoglycemia in people with type 1 diabetes on multiple daily injections	19
PDA (Privacy-Preserving Distributed Algorithms) in action: ten principles for high-quality multi-site clinical evidence generation	19
Strengthening the use of artificial intelligence within healthcare delivery organizations: balancing regulatory compliance and patient safety	19
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research	19
Use of calibration to improve the precision of estimates obtained from All of Us data	19
Translating innovation into payment: A.I. reimbursement in U.S. health care	19
Do electronic health record systems “dumb down” clinicians?	19
Methodologies and key considerations for implementing the International Classification of Diseases-11th revision morbidity coding: insights from a national pilot study in China	18
Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort	18
Exploring approaches to computational representation and classification of user-generated meal logs	18
The Potential Implications of Informatics for Value-Based Bare	18
An exploratory analysis of SNOMED CT national editions	18
Safety risks and workflow implications associated with nursing-related free-text communication orders	18
Impact of wearable device data and multi-scale entropy analysis on improving hospital readmission prediction	18
Hillclimb-Causal Inference: a data-driven approach to identify causal pathways among parental behaviors, genetic risk, and externalizing behaviors in children	18
NutriRAG: unleashing the power of large language models for food identification and classification through retrieval methods	18
The use of artificial intelligence to optimize medication alerts generated by clinical decision support systems: a scoping review	18
Assessing health literacy and diversity within the All of Us Research Program	18
A novel approach to patient portal activation data to power equity improvements	18
To the editor of JAMIA	17
Establishing and implementing a responsible artificial intelligence framework: a 1-year review	17
A national survey of digital health company experiences with electronic health record application programming interfaces	17
Deep sequential neural network models improve stratification of suicide attempt risk among US veterans	17
Automated deidentification of radiology reports combining transformer and “hide in plain sight” rule-based methods	17
Information extraction from clinical notes: are we ready to switch to large language models?	17
Ambient artificial intelligence scribes: physician burnout and perspectives on usability and documentation burden	17
A messaging standard for environmental inspections: is it time?	17
Mapping the delineation of practice to the AMIA foundational domains for applied health informatics	17
VACtrac: enhancing access immunization registry data for population outreach using the Bulk Fast Healthcare Interoperable Resource (FHIR) protocol	17
Translation readiness of model-based synthetic tabular data in healthcare: a systematic review and governance audit	17
National COVID Cohort Collaborative data enhancements: a path for expanding common data models	17
Deployment of machine learning algorithms to predict sepsis: systematic review and application of the SALIENT clinical AI implementation framework	17
CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs	17
Community engagement in the development of health-related data visualizations: a scoping review	17
Implementation and impact of an electronic patient reported outcomes system in a phase II multi-site adaptive platform clinical trial for early-stage breast cancer	17
A perspective on individualized treatment effects estimation from time-series health data	17
Generating synthetic electronic health record data: a methodological scoping review with benchmarking on phenotype data and open-source software	17
Design of an interface to communicate artificial intelligence-based prognosis for patients with advanced solid tumors: a user-centered approach	17
FairICP: identifying biases and increasing transparency at the point of care in post-implementation clinical decision support using inductive conformal prediction	16
Correction to: Dobbs and the future of health data privacy for patients and healthcare organizations	16
In vitro to in vivo translation of artificial intelligence for clinical use: screening for acute coronary syndrome to identify ST-elevation myocardial infarction	16
Toward a unified understanding of drug-drug interactions: mapping Japanese drug codes to RxNorm concepts	16
Is the patient speaking or the nurse? Automatic speaker type identification in patient–nurse audio recordings	16
Including AI in diffusion-weighted breast MRI has potential to increase reader confidence and reduce workload	16
Beyond the individual	16
quEHRy: a question answering system to query electronic health records	16
Social media use and mental health among older adults with multimorbidity: the role of self-care efficacy	16
MedRep: medical concept representations for general electronic health record foundation models	16
Standards and frameworks	16
Retraction and replacement of: Electronic connectivity between hospital pairs: impact on emergency department-related utilization	16
Post-implementation optimization of medication alerts in hospital computerized provider order entry systems: a scoping review	16
Innovative informatics interventions to improve health and health care	16
REDCap and the National Mesothelioma Virtual Bank—a scalable and sustainable model for rare disease biorepositories	16
“Are we there yet?” Ten persistent hazards and inefficiencies with the use of medication administration technology from the perspective of practicing nurses	16
Factors impacting electronic patient-generated data use in safety-net systems: a qualitative study	16
Distilling large language models for matching patients to clinical trials	15
Machine learning approaches for electronic health records phenotyping: a methodical review	15
An interactive fitness-for-use data completeness tool to assess activity tracker data	15