OOIR: Observatory of International Research

Papers

(The H4-Index of Systemic Biology is 30. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life	119
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l	106
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life	100
The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous–Paleogene (K–Pg) Mass Extinction Event	77
Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)	68
Out of Sight, Out of Mind: Widespread Nuclear and Plastid-Nuclear Discordance in the Flowering Plant GenusPolemonium(Polemoniaceae) Suggests Widespread Historical Gene Flow Despite Limited Nucl	62
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales	54
Defining Coalescent Genes: Theory Meets Practice in Organelle Phylogenomics	47
Ghost Lineages Highly Influence the Interpretation of Introgression Tests	46
The Legacy of Recurrent Introgression during the Radiation of Hares	44
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow	42
Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes	41
Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence Data and Exploring Compositional Bias Solutions in Next Generation Data Sets	41
Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent	40
Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation	39
Sequence Capture Phylogenomics of True Spiders Reveals Convergent Evolution of Respiratory Systems	38
Death is on Our Side: Paleontological Data Drastically Modify Phylogenetic Hypotheses	37
QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution	37
Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos	36
A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses	35
Repositories for Taxonomic Data: Where We Are and What is Missing	34
DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies	33
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)	33
Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae)	33
A Total-Evidence Dated Phylogeny of Echinoidea Combining Phylogenomic and Paleontological Data	33

Congruence and Conflict in the Higher-Level Phylogenetics of Squamate Reptiles: An Expanded Phylogenomic Perspective	32
Joint Phylogenetic Estimation of Geographic Movements and Biome Shifts during the Global Diversification ofViburnum	32
Phylogenomics of Monitor Lizards and the Role of Competition in Dictating Body Size Disparity	31
Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses	30
StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent	30