OOIR: Observatory of International Research

Papers

(The H4-Index of Systemic Biology is 30. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life	133
Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)	85
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales	77
Ghost Lineages Highly Influence the Interpretation of Introgression Tests	57
Defining Coalescent Genes: Theory Meets Practice in Organelle Phylogenomics	56
QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution	52
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow	52
The Legacy of Recurrent Introgression during the Radiation of Hares	51
Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes	48
Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation	44
StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent	42
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)	42
DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies	41
Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)	37
Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa	37
Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies	36
Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs	36
Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data	36
A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses	36
Phylogenomic and Macroevolutionary Evidence for an Explosive Radiation of a Plant Genus in the Miocene	35
Estimating Global Biodiversity: The Role of Cryptic Insect Species	35
Long Branch Attraction Biases in Phylogenetics	34
Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses	34
Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere	33
Identification of Species by Combining Molecular and Morphological Data Using Convolutional Neural Networks	32

Pulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling	32
Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data	31
Robust Analysis of Phylogenetic Tree Space	31
A New Pipeline for Removing Paralogs in Target Enrichment Data	30
Phylogenomic Insights into the Origin of Primary Plastids	30
Phylogenomics and Historical Biogeography of Seahorses, Dragonets, Goatfishes, and Allies (Teleostei: Syngnatharia): Assessing Factors Driving Uncertainty in Biogeographic Inferences	30
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)	30