Molecular Phylogenetics and Evolution

Article	Citations
Editorial Board	119
The systematics and evolution of the Sri Lankan rainforest land snail Corilla: New insights from RADseq-based phylogenetics	80
Phylogenomics and biogeography of arid-adapted Chlamydogobius goby fishes	54
Resolving the phylogenetic relationship among recently diverged members of the rockfish subgenus Sebastosomus	52
The distribution and characteristic of two transposable elements in the genome of Cydia pomonella granulovirus and codling moth	47
Species delimitation within a taxonomically complex group: An example from the genus Apodemus (Rodentia: Muridae)	44
Erratum to “Disentangling historical relationships within Poeciliidae (Teleostei: Cyprinodontiformes) using ultraconserved elements” [Mol. Phylogenet. Evol. 190 (2024) 107965]	44
Phylogenomic insights into historical biogeography and species delimitation of African Ampelocissus (Vitaceae)	41
Recent evolution of extreme sexual dimorphism in the huia (Heteralocha acutirostris; Callaeidae)	40
Diversification and introgression in four chromosomal taxa of the Pearson’s horseshoe bat (Rhinolophus pearsoni) group	39
Phylogeny, population structure, and conservation genomics of Galapagos vermilion flycatchers (genus Pyrocephalus)	37
When colors mislead: Genomics and bioacoustics prompt re-classification of Asian flycatcher radiation (Aves: Niltavinae)	36
Machine learning can be as good as maximum likelihood when reconstructing phylogenetic trees and determining the best evolutionary model on four taxon alignments	35
Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex	35
Multiple origins, singular success: genomic evidence for past recurrent hybridization in Chenopodium album s. str. (Amaranthaceae)	35
Resolving the deep phylogeny: Implications for early adaptive radiation, cryptic, and present-day ecological diversity of Papuan microhylid frogs	34
Peering through the hedge: Multiple datasets yield insights into the phylogenetic relationships and incongruences in the tribe Lilieae (Liliaceae)	32
Incomplete lineage sorting and hybridization underlie tree discordance in Petunia and related genera (Petunieae, Solanaceae)	32
Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus Cerastes	31
Disconnecting trapdoors: Phylogenomic analyses reveal evolutionary contrasts in trapdoor spiders with intercontinental distribution (Idiopidae, Idiopinae)	31
ModelRevelator: Fast phylogenetic model estimation via deep learning	31
Revisiting evolutionary relationships of Antrodiaetus (Araneae, Mygalomorphae, Antrodiaetidae) using phylogenomics; implications for species diversity and biogeography of a persistent Holarctic lineag	31
Whole genome phylogenomics helps to resolve the phylogenetic position of the Zygothrica genus group (Diptera, Drosophilidae) and the causes of previous incongruences	30
Mitochondrial genome and ultraconserved elements reveal a species complex within the Central American brocket deer Mazama temama (Artiodactyla: Cervidae)	30
The evolution of primate malaria parasites: A study on the origin and diversification of Plasmodium in lemurs	29

Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)	28
A phylogenomic and morphometric reassessment of Ovulidae highlights host-related shell shape evolution	28
Exon-capture data resolve relationships resulting from a rapid radiation within family Gobiidae	28
Substrate specialisation drives an unexpectedly diverse radiation in barking geckos (Ptenopus: Gekkonidae)	27
Phylogenomics and taxon-rich phylogenies of new and historical specimens shed light on the systematics of Hypnea (Cystocloniaceae, Rhodophyta)	27
Evolution, range formation and a revised taxonomy of the disjunctly distributed European members of Astragalus sect. Caprini, an intricate group including highly endangered species of dry grasslands	27
Genomic phylogeography illuminates deep cyto-nuclear discordances in midwife toads (Alytes)	27
Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta)	26
Scaling the high latitudes: evolution, diversification, and dispersal of Coryphella nudibranchs across the Northern Hemisphere	26
Gauging ages of tiger swallowtail butterflies using alternate SNP analyses	26
Plastid-nuclear coevolution of ribosomal protein genes in papilionoid legumes	25
Out of North Africa: Evolution and biogeography of Afro-Arabian dwarf tarantulas (Theraphosidae, Ischnocolinae)	25
Redefining Chlorobotryaceae as one of the principal and most diverse lineages of eustigmatophyte algae	25
Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae)	24
Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region	24
Discordance between phylogenomic methods in Near Eastern mountain newts (Neurergus, Salamandridae)	23
Corrigendum to “Phylogeography, hybridization, and species discovery in the Etheostoma nigrum complex (Percidae: Etheostoma: Boleosoma)” [Mol. Phylogenet. Evol. 178 (2023) 107645]	23
Phylotranscriptomic relationships of the Oophila clade of green algae associated to amphibian egg masses	23
Temporal and spatial diversification along the Amazonia-Cerrado transition in Neotropical treefrogs of the Boana albopunctata species group	22
Sink or swim: Phylogenomic analysis of Baikal sculpins reveals multiple transformations to pelagic, bathybenthic, and lotic ecomorphologies	22
Phylogenomic reconstruction of Solenogastres (Mollusca, Aplacophora) informs hypotheses on body size evolution	22
Molecular phylogeny of deep-sea blind lobsters of the family Polychelidae (Decapoda: Polychelida), with implications for the origin and evolution of these “living fossils”	21
Phylogenetic placement and species delimitation of the crab spider genus Phrynarachne (Araneae: Thomisidae) from China	21
Molecular phylogenetics of the fresh water sleepers Odontobutis (Gobiiformes: Odontobutidae) and its implications on biogeography of freshwater ichthyofauna of East Asia	21
Congruent patterns of cryptic cladogenesis revealed using RADseq and Sanger sequencing in a velvet worm species complex (Onychophora: Peripatopsidae: Peripatopsis sedgwicki)	21
Geological events and climate change drive diversification and speciation of mute cicadas in eastern continental Asia	21
Different expansion events of the actin and tubulin gene families within spirotrichean ciliates (Alveolate, Ciliophora)	21
Phylogeny and historical biogeography of neotropical catfishes Trichomycterus (Siluriformes: Trichomycteridae) from eastern Brazil	20
Phylogenetic relationships and historical biogeography of silkmoths (Lepidoptera: Bombycidae) suggest an origin in Southern Gondwana	20
Nuclear phylogenomics of Eperua (Leguminosae) highlights the role of habitat and morphological lability in dispersal and diversification across Amazonia and in the Caatinga-Cerrado ecotone	19
Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny	19
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex	19
UCE phylogenomics reveals orogenic vicariance and introgression shaping diversification in the montane Mexican lizard genus Barisia (Squamata: Anguidae)	19
Genomic SNPs resolve the phylogeny of an ancient amphibian island radiation from the Seychelles	19
Phylogenetic relationships of the Geoplaninae land planarians (Platyhelminthes, Tricladida) assessed with a total evidence approach, with the description of a new species of Gigantea	19
Corrigendum to “Molecular systematics and global phylogeography of angel sharks (genus Squatina)” [Mol. Phylogenetics Evol. 54 (2010) 395–404]	19
Ocean crossers: A tale of disjunctions and speciation in the dwarf-fruticose Lichina (lichenized Ascomycota)	18
Shining new light on naupliar eyes: A novel molecular phylogeny for Pleuromamma (Family: Metridinidae) and the characterization of luciferase and opsin expression	18
Resolving reticulate evolutionary histories of polyploid species of Azorella (Apiaceae) endemic to New Zealand	18
Dynamics and timing of diversification events of ciliated eukaryotes from a large phylogenomic perspective	18
Cenozoic colonisation of the Indian Ocean region by the Australian freshwater-originating glassperch family Ambassidae (Teleostei)	18
Phylogenomics AND biogeography of Castanea (chestnut) and Hamamelis (witch-hazel) – Choosing between RAD-seq and Hyb-Seq approaches	18
Recurrent founder-event speciation across the Mediterranean likely shaped the species diversity and geographic distribution of the freshwater snail genus Mercuria Boeters, 1971 (Caenogastropoda: Hydro	18
Gone with Gondwana: Amphipod diversification in freshwaters followed the breakup of the supercontinent	18
Editorial Board	18
Phylogenomics reveals climate-driven range expansion of the antlion tribe Megistopini (Neuroptera: Myrmeleontidae: Nemoleontinae) during the Oligocene-Miocene transition	17
Diversity of Brachionus plicatilis species complex (Rotifera) in inland saline waters from China: Presence of a new mitochondrial clade on the Tibetan Plateau	17
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)	17
The phylogeny and evolutionary ecology of hoverflies (Diptera: Syrphidae) inferred from mitochondrial genomes	17
Study of epiphytic non-geniculate coralline algae Reveals an Evolutionarily significant Genus, Pseudoderma gen. nov. (Lithophylloideae, Corallinophycidae)	17

Genomic insights into the biogeography and evolution of Galápagos iguanas	17
The hybridization origin of the Chinese endemic herb genus Notopterygium (Apiaceae): Evidence from population genomics and ecological niche analysis	17
A phylotranscriptome study using silica gel-dried leaf tissues produces an updated robust phylogeny of Ranunculaceae	17
Slippery slopes: Montane isolation and elevational shifts shape the evolution and diversity of Iberolacerta lizards	16
Novel mating-type-associated genes and gene fragments in the genomes of Mycosphaerellaceae and Teratosphaeriaceae fungi	16
A new species of Populus and the extensive hybrid speciation arising from it on the Qinghai-Tibet Plateau	16
A new bunting species in South China revealed by an integrative taxonomic investigation of the Emberiza godlewskii complex (Aves, Emberidae)	16
Editorial Board	16
Endogean habits drove cryptic diversification in Appalachian Lathrobium Gravenhorst (Coleoptera, Staphylinidae)	16
Divergence time and biogeography of the fungal genus Porodaedalea (Basidiomycota, Hymenochaetales), obligate phytopathogens on coniferous trees	16
Editorial Board	16
Population structure in Mixornis tit-babblers across Sunda Shelf matches interfluvia of paleo-rivers	16
Molecular phylogeny, historical biogeography, and classification of Pseudocoladenia butterflies (Lepidoptera: Hesperiidae)	16
Phylogenomic analysis of Stylops reveals the evolutionary history of a Holarctic Strepsiptera radiation parasitizing wild bees	15
Whole-genome resequencing unveils the phylogeographic coevolution of Oncomelania hupensis with Yangtze River dynamics in China	15
Rearranging and completing the puzzle: Phylogenomic analysis of bark beetles Dendroctonus reveals new hypotheses about genus diversification	15
Integrative approach to species delimitation in Rhizophydiales: Novel species of Angulomyces, Gorgonomyces, and Terramyces from northern Thailand	15
The Sela macaque (Macaca selai) is a distinct phylogenetic species that evolved from the Arunachal macaque following allopatric speciation	15
Deciphering the drivers of speciation in Alpine Noccaea (Brassicaceae) reveal an evolution predominantly shaped by geography	15
Structural dynamics of chloroplast genome in Paphiopedilum (Orchidaceae): in response to natural hybridization	15
Macroevolutionary analyses point to a key role of hosts in diversification of the highly speciose eriophyoid mite superfamily	15
Under the hood: Phylogenomics of hooded tick spiders (Arachnida, Ricinulei) uncovers discordance between morphology and molecules	15
Phylogeny and biogeography of harmochirine jumping spiders (Araneae: Salticidae)	15
Deeply divergent freshwater fish species within a single river system in central Sulawesi	15
Multilocus phylogeny of the land snail Helix differs substantially from the mitochondrial gene tree	15
Editorial Board	15
Out of the desert: Paleoclimatic changes drove the diversification of arid-adapted Ocymyrmex ants in southern Africa	15
Novel oceanic cyanobacterium isolated from Bangaram island with profound acid neutralizing ability is proposed as Leptolyngbya iicbica sp. nov. strain LK	14
New evidence of consistency between phylogeny and morphology for two taxa in ciliated protists, the subclasses Oligotrichia and Choreotrichia (Protista, Ciliophora)	14
Exceptional levels of species discovery ameliorate inferences of the biogeography and diversification of an Afrotropical catfish family	14
Imperiled wanderlust lichens in steppe habitats of western North America comprise geographically structured mycobiont lineages and a reversal to sexual reproduction within this asexual clade	14
Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications	14
Population genomics of the southern giraffe	14
Skeleton phylogeny reconstructed with transcriptomes for the tribe Drosophilini (Diptera: Drosophilidae)	14
Following the aridity: Historical biogeography and diversification of the Philodromidae spider genus Petrichus in South America	14
Phylogenomics and historical biogeography of West Indian Rock Iguanas (genus Cyclura)	14
A story of vicariance? how the geology of oceanic archipelagos influenced the evolutionary history of endemic damselflies	14
Expanding Acutuncus: Phylogenetics and morphological analyses reveal a considerably wider distribution for this tardigrade genus	14
Corrigendum to “Molecular phylogeny and trait evolution in an ancient terrestrial arthropod lineage: Systematic revision and implications for ecological divergence (Collembola, Tomocerinae)” [Mol. Phy	14
Identifying a potentially invasive population in the native range of a species: The enlightenment from the phylogeography of the yellow spotted stink bug, Erthesina fullo (Hemiptera: Pentatomidae)	14
Phylogeny and evolution of dissimilatory sulfite reduction in prokaryotes	14
Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade	14
Phylogenetic relationships and the origin of New World soles (Teleostei: Pleuronectiformes: Achiridae): The role of estuarine habitats	14
Ecological speciation by sympatric host shifts in a clade of herbivorous sea slugs, with introgression and localized mitochondrial capture between species	14
Synchronous Miocene radiations and geographic-dependent diversification of pantropical Xylopia (Annonaceae)	14
Explosion of goby fish diversity at the Eocene-Oligocene transition	14
Ancient gene flow shapes phylogenetic discordance in a genus of wood-warblers (Aves: Parulidae: Leiothlypis)	14
Diversification of the sleepers (Gobiiformes: Gobioidei: Eleotridae) and evolution of the root gobioid families	14
Genomic data provide a robust phylogeny backbone for Rhodiola L. (Crassulaceae) and reveal extensive reticulate evolution during its rapid radiation	14
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing	14
Multi-locus phylogeny and species delimitations of the striped-back shrew group (Eulipotyphla: Soricidae): Implications for cryptic diversity, taxonomy and multiple speciation patterns	13
Phylogenetic origin of dioecious Callicarpa (Lamiaceae) species endemic to the Ogasawara Islands revealed by chloroplast and nuclear whole genome analyses	13
Ultraconserved elements-based phylogenomic systematics of the snake superfamily Elapoidea, with the description of a new Afro-Asian family	13
Overwater dispersal from a single source island shaped the diversity of green anole lizards (Anolis carolinensis subgroup)	13
Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order	13
Molecular systematics and phylogenetics of the spider genus Mastigusa Menge, 1854 (Araneae, Cybaeidae)	13
In the land of the blind: Exceptional subterranean speciation of cryptic troglobitic spiders of the genus Tegenaria (Araneae: Agelenidae) in Israel	13
Integrative taxonomy in a rapid speciation group associated with mating system transition: A case study in the Primula cicutariifolia complex	13
Genomic data reveals cryptic diversity and suggests five putative species in the broad-snouted caiman in South America	13
Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sen	13
Mixed, not stirred: Genomic data confirm the first case of interspecific hybridization in planarian triclads (Platyhelminthes: Tricladida) and raise questions about a possibly novel form of hybrid spe	13
A global blueberry phylogeny: Evolution, diversification, and biogeography of Vaccinieae (Ericaceae)	13
Plastid phylogenomics of the tribe potentilleae (Rosaceae)	13
Phylogenomic loci define the generic boundaries of Gochnatieae and improve resolution at the species level in Moquiniastrum (Compositae)	13
Historical DNA solves century-old mystery on sessility in freshwater gastropods	13
Paraphyly and cryptic diversity unveils unexpected challenges in the “naked lichens” (Calvitimela, Lecanoromycetes, Ascomycota)	13
Australia’s hidden radiation: Phylogenomics analysis reveals rapid Miocene radiation of blindsnakes	13
Genomic and phenotypic characterization of Thermosynechococcus-like strains reveals eight species within the genus Thermosynechococcus and a novel genus Parathermosynechococcus gen. nov.	13
A model of hybrid speciation process drawn from three new poplar species originating from distant hybridization between sections	13
Molecular data and museum collections reframe Pleuroceridae (Gastropoda: Cerithioidea) diversity and conservation priorities in an overlooked freshwater biodiversity hotspot	13
A thorny tale: The origin and diversification of Cirsium (Compositae)	13
Evolution of andrenine bees reveals a long and complex history of faunal interchanges through the Americas during the Mesozoic and Cenozoic	13
Diversification and evolutionary history of the African laminated-toothed rats (Rodentia, Otomyini)	12
Integrative taxonomy of the subfamily Orbioninae (Crustacea: Isopoda) based on mitochondrial and nuclear data with evidence that supports Epicaridea as a suborder	12
Biogeography and evolution of social parasitism in Australian Myrmecia bulldog ants revealed by phylogenomics	12
Editorial Board	12
A comprehensive molecular phylogeny of the genus Sylvirana (Anura: Ranidae) highlights unrecognized diversity, revised classification and historical biogeography	12
Two new tardigrade genera from New Zealand’s Southern Alp glaciers display morphological stasis and parallel evolution	12
Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications	12
Phylogenomic analyses of hamsters (Cricetinae) inferred from GBS data and mitochondrial genomes	12

When lizards shift to a more plant-based lifestyle: The macroevolution of mutualistic lizard-plant-interactions (Squamata: Sauria/Lacertilia)	12
Phylogenomic evolutionary insights in the fern family Gleicheniaceae	12
A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila)	12
Geographic isolation, ecological adaptation, and hybridization influenced fast divergence of a Solanaceae plant group from subtropical highland grasslands	12
Genomic data reveal local endemism in Southern California Rubber Boas (Serpentes: Boidae, Charina) and the critical need for enhanced conservation actions	12
Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae)	12
Hidden species diversity and mito-nuclear discordance within the Mediterranean cone snail, Lautoconus ventricosus	12
The phylogeny and global biogeography of Primulaceae based on high-throughput DNA sequence data	12
Independent recruitment of FRUITFULL-like transcription factors in the convergent origins of vernalization-responsive grass flowering	12
Integrated morphological and phylogenomic analyses revealed a novel genus Paramicrotoena (Lamiaceae − Pogostemoneae) discovered in the Pan-Himalaya	12
Spider nest-retreat origin, diversification, and architectural plasticity link to historical and current temperature fluctuations	12
Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)	12
Out of the ancient lake: Multiple riverine colonizations and diversification of the freshwater snails in the genus Semisulcospira around Lake Biwa	12
Genomic insights into nematode microbiomes reveal novel endosymbionts Rickettsiella	12
Out of southern Africa: Origins and cryptic speciation in Chamaeleo, the most widespread chameleon genus	12
Phylogenomics offers new insights into the classification of Phytoseiidae (Acari: Mesostigmata)	12
Evaluating species boundaries using coalescent delimitation in pine-killing Monochamus (Coleoptera: Cerambycidae) sawyer beetles	12
Phylogeny, character evolution, and biogeography of the fern genus Bolbitis (Dryopteridaceae)	11
Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages	11
Genome skimming elucidates the evolutionary history of Octopoda	11
Phylotranscriptomics reveals conflicts of deep nodes in Saxifragales	11
Phylogenomic insights into the historical biogeography, character-state evolution, and species diversification rates of Cypripedioideae (Orchidaceae)	11
The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae)	11
Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)	11
Evolution of the Sabulina verna group (Caryophyllaceae) in Europe: A deep split, followed by secondary contacts, multiple allopolyploidization and colonization of challenging substrates	11
Phylogenomics of Amazonian squirrel monkeys (Saimiri: Primates, Cebidae)	11
Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles	11
Phylogenomics of Anguis and Pseudopus (Squamata, Anguidae) indicates Balkan-Apennine mitochondrial capture associated with the Messinian event	11
Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods	11
Harnessing transposable elements: A new frontier in insect systematics	11
Molecular phylogeny and divergence time of Harpalyce (Leguminosae, Papilionoideae), a lineage with amphitropical diversification in seasonally dry forests and savannas	11
Phylogenomics of the woodland salamanders (Plethodon): Reticulate evolution and indistinct species boundaries	11
Understanding early stages of speciation: Allopatric divergence, introgression and chromosomal dynamics in the Erysimum odoratum species complex	11
Diversification in the mountains: Evolutionary history and molecular phylogeny of Anatolian rock lizards	11
Phylogenomics resolves the puzzling phylogeny of banded newts (genus Ommatotriton)	11
Intra-island patterns of cryptic diversity within an oceanic island: Insights from the differentiation of Schizidium Verhoeff, 1901 (Oniscidea, Armadillidiidae) within Cyprus, with descriptions of two	11
Horizontally transferred glycoside hydrolase 26 may aid hemipteran insects in plant tissue digestion	11
Diversity of Wolbachia infection and its influence on mitochondrial DNA variation in the diamondback moth, Plutella xylostella	11
Deciphering phylogenetic relationships of and delimiting species boundaries within the controversial ciliate genus Conchophthirus using an integrative morpho-evo approach	11
Taxonomic insights and evolutionary history in East Asian terrestrial slugs of the genus Meghimatium	11
Disentangling conflicting molecular phylogenetic signals in nuclear and plastid DNA of the western Eurasian-Mediterranean grass genus Cynosurus and its relatives (Poaceae subtribes Cynosurinae and Par	11
Molecular phylogenetics reveals the evolutionary history of marine fishes (Actinopterygii) endemic to the subtropical islands of the Southwest Pacific	11
Convergent evolution in nuclear and mitochondrial OXPHOS subunits underlies the phylogenetic discordance in deep lineages of Squamata	11
Editorial Board	11