Molecular Phylogenetics and Evolution

Article	Citations
Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution	67
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome ski	65
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives	59
Formally described species woefully underrepresent phylogenetic diversity in the common lichen photobiont genus Trebouxia (Trebouxiophyceae, Chlorophyta): An impetus for developing an integrated taxon	50
Evolutionary rates of and selective constraints on the mitochondrial genomes of Orthoptera insects with different wing types	47
Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae?	47
Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data	46
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes	45
Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data	44
New multilocus phylogeny reorganises the family Macrobiotidae (Eutardigrada) and unveils complex morphological evolution of the Macrobiotus hufelandi group	41
Under the rug: Abandoning persistent misconceptions that obfuscate organelle evolution	40
A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system	40
Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers	40
Molecular phylogeny, historical biogeography and revised classification of andrenine bees (Hymenoptera: Andrenidae)	38
Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture	37
Phylogeny and classification of Odonata using targeted genomics	37
Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma–Gastrochilus clades (Orchidaceae, Aeridinae)	35
Reconstructing phylogenetic relationships based on repeat sequence similarities	34
A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)?	33
Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny	33
Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements	33
Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size	33
Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study	33
Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae	32
Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria	32

Phylogenomic relationships and character evolution of the grape family (Vitaceae)	32
New insights into the phylogeny and evolution of lady beetles (Coleoptera: Coccinellidae) by extensive sampling of genes and species	32
Integrative description of bisexual Paramacrobiotus experimentalis sp. nov. (Macrobiotidae) from republic of Madagascar (Africa) with microbiome analysis	31
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy	31
Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana)	31
Phylogenomic analyses recover a clade of large-bodied decapodiform cephalopods	30
A novel reference dated phylogeny for the genus Spodoptera Guenée (Lepidoptera: Noctuidae: Noctuinae): new insights into the evolution of a pest-rich genus	30
Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization	30
Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway	30
Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha)	29
Out of the Himalaya-Hengduan Mountains: Phylogenomics, biogeography and diversification of Polygonatum Mill. (Asparagaceae) in the Northern Hemisphere	28
Biogeography of the cyanobacterium Raphidiopsis (Cylindrospermopsis) raciborskii: Integrating genomics, phylogenetic and toxicity data	28
Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events	27
Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)	27
Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests	27
A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths	26
Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia	26
Resolving phylogeny and polyploid parentage using genus-wide genome-wide sequence data from birch trees	25
Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus	25
Molecular phylogenetic assessment of the tribal classification of Lamiinae (Coleoptera: Cerambycidae)	25
Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): Molecular species delimitation and morphometric analyses	24
More is needed—Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)	24
Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)	24
Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses	24
Plastomes from tribe Plantagineae (Plantaginaceae) reveal infrageneric structural synapormorphies and localized hypermutation for Plantago and functional loss of ndh genes from Littorella	23
Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga)	23
An integrative phylogenomic approach illuminates the evolutionary history of Old World tree frogs (Anura: Rhacophoridae)	23
Large-scale phylogenomic analysis provides new insights into the phylogeny of the class Oligohymenophorea (Protista, Ciliophora) with establishment of a new subclass Urocentria nov. subcl	23
Implications of plastome evolution in the true lilies (monocot order Liliales)	23
Out of Africa: The origins of the protozoan blood parasites of the Trypanosoma cruzi clade found in bats from Africa	22
Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta)	22
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae)	21
Tempo and mode of evolution of oryzomyine rodents (Rodentia, Cricetidae, Sigmodontinae): A phylogenomic approach	21
Phylogenomic framework of the IRLC legumes (Leguminosae subfamily Papilionoideae) and intercontinental biogeography of tribe Wisterieae	21
Phylogenomics of braconid wasps (Hymenoptera, Braconidae) sheds light on classification and the evolution of parasitoid life history traits	21
Phylogenomics, co-evolution of ecological niche and morphology, and historical biogeography of buckeyes, horsechestnuts, and their relatives (Hippocastaneae, Sapindaceae) and the value of RAD-Seq for	21
Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness	21
How mitonuclear discordance and geographic variation have confounded species boundaries in a widely studied snake	21
Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders	21
Revealing new sponge-associated cyanobacterial diversity: Novel genera and species	20
Polyploidy in gymnosperms – Insights into the genomic and evolutionary consequences of polyploidy in Ephedra	20
Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean	20
An alpine grasshopper radiation older than the mountains, on Kā Tiritiri o te Moana (Southern Alps) of Aotearoa (New Zealand)	20
A taxonomist‘s nightmare – Cryptic diversity in Caribbean intertidal arthropods (Arachnida, Acari, Oribatida)	20
Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography	20
Phylogeny and time scale of diversification in the fossil-rich sunfishes and black basses (Teleostei: Percomorpha: Centrarchidae)	20
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)	20
Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae)	19
Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)	19
Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae)	19

Diversification history of clown tree frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group)	19
Cryptic diversity and non-adaptive radiation of montane New Guinea skinks (Papuascincus; Scincidae)	19
A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae)	19
Diversity, biogeography, evolutionary relationships, and conservation of Eastern Mediterranean freshwater mussels (Bivalvia: Unionidae)	19
ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae)	19
Phylogenomic inference of species and subspecies diversity in the Palearctic salamander genus Salamandra	19
A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ra	19
Phylomitogenomics provides new perspectives on the Euphasmatodea radiation (Insecta: Phasmatodea)	19
Genome-wide data reveal discordant mitonuclear introgression in the intermediate horseshoe bat (Rhinolophus affinis)	18
Genomic fingerprints of palaeogeographic history: The tempo and mode of rift tectonics across tropical Africa has shaped the diversification of the killifish genus Nothobranchius (Teleostei: Cyprinodo	18
Molecular phylogeny, classification, biogeography and diversification patterns of a diverse group of moths (Geometridae: Boarmiini)	18
Systematics and geographical distribution of Galba species, a group of cryptic and worldwide freshwater snails	18
Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes	18
Phylotranscriptomics reveals the complex evolutionary and biogeographic history of the genus Tsuga with an East Asian-North American disjunct distribution	18
Multigene phylogeny uncovers oviposition-related evolutionary history of Cerambycinae (Coleoptera: Cerambycidae)	18
RAD sequencing resolves the phylogeny, taxonomy and biogeography of Trichophoreae despite a recent rapid radiation (Cyperaceae)	18
Cryptic diversity and ancient diversification in the northern Atlantic Forest Pristimantis (Amphibia, Anura, Craugastoridae)	18
Plastome phylogenomics, systematics, and divergence time estimation of the Beilschmiedia group (Lauraceae)	18
Unraveling the systematics and evolution of the ‘Geophagus’ brasiliensis (Cichliformes: Cichlidae) species complex	18
Analysis of ultraconserved elements supports African origins of narrow-mouthed frogs	18
Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birds	17
Poor performance of DNA barcoding and the impact of RAD loci filtering on the species delimitation of an Iberian ant-eating spider	17
Multilocus phylogeny of Paratelmatobiinae (Anura: Leptodactylidae) reveals strong spatial structure and previously unknown diversity in the Atlantic Forest hotspot	17
Early eukaryotic origins and metazoan elaboration of MAPR family proteins	17
Another blow to the conserved gene order in Annelida: Evidence from mitochondrial genomes of the calcareous tubeworm genus Hydroides	17
Comparative phylogeographic and demographic analyses reveal a congruent pattern of sister relationships between bird populations of the northern and south-central Atlantic Forest	17
New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels	17
Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology	17
A phylogeny for the Drosophila montium species group: A model clade for comparative analyses	17
Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae	17
Unique environmental Symbiodiniaceae diversity at an isolated island in the northwestern Pacific	16
Evolution of Sri Lanka’s Giant Danios (Teleostei: Cyprinidae: Devario): Teasing apart species in a recent diversification	16
Lost in translation: Population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron	16
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia)	16
Molecular systematics and biogeographic history of the African climbing-mouse complex (Dendromus)	16
Genetic changes and host adaptability in sugarcane mosaic virus based on complete genome sequences	16
Genetic variation and admixture of red-eared sliders (Trachemys scripta elegans) in the USA	16
Evolutionary history of inversions in directional mutational pressures in crustacean mitochondrial genomes: Implications for evolutionary studies	16
The phylogenetic relationship within SARS-CoV-2s: An expanding basal clade	16
Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: First fully resolved phylogeny, evolutionary history and delimitation of extant genera	16
The impact of Miocene orogeny for the diversification of Caucasian Epeorus (Caucasiron) mayflies (Ephemeroptera: Heptageniidae)	16
A 313 plastome phylogenomic analysis of Pooideae: Exploring relationships among the largest subfamily of grasses	16
Shining a light on species delimitation in the tree genus Engelhardia Leschenault ex Blume (Juglandaceae)	16
Predatory colponemids are the sister group to all other alveolates	16
The biogeography of Dromiciops in southern South America: Middle Miocene transgressions, speciation and associations with Nothofagus	16
Cophylogenetic patterns in algal symbionts correlate with repeated symbiont switches during diversification and geographic expansion of lichen-forming fungi in the genus Sticta (Ascomycota, Peltigerac	16
Phylogenetics of mud snakes (Squamata: Serpentes: Homalopsidae): A paradox of both undescribed diversity and taxonomic inflation	16
Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)	16
Unravelling unknown cyanobacteria diversity linked with HCN production	16
New insights into the evolution of the fern family Dennstaedtiaceae from an expanded molecular phylogeny and morphological analysis	16
Trait-dependent dispersal in rails (Aves: Rallidae): Historical biogeography of a cosmopolitan bird clade	15
Reconstruction of the evolutionary biogeography reveal the origins and diversification of oysters (Bivalvia: Ostreidae)	15
The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus	15
Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs	15
Historical biogeography of Pomaderris (Rhamnaceae): Continental vicariance in Australia and repeated independent dispersals to New Zealand	15
Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)	15
Phylogenomics of the Neotropical fish family Serrasalmidae with a novel intrafamilial classification (Teleostei: Characiformes)	15
The potential of genome-wide RAD sequences for resolving rapid radiations: a case study in Cactaceae	15
Quaternary climatic fluctuations influence the demographic history of two species of sky-island endemic amphibians in the Neotropics	15
Phylogenetics and the evolution of terrestriality in mudskippers (Gobiidae: Oxudercinae)	15
Phylogenomic analyses of mud dragons (Kinorhyncha)	15
A comprehensive phylogeny helps clarify the evolutionary history of host breadth and lure response in the Australian Dacini fruit flies (Diptera: Tephritidae)	14
Multiple species delimitation approaches applied to the avian lark genus Alaudala	14
Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration models	14
A timetree for phytoplasmas (Mollicutes) with new insights on patterns of evolution and diversification	14
Phylogenomic data resolve higher-level relationships within South American Liolaemus lizards	14
Molecular Phylogeny of Cryptonanus (Didelphidae: Thylamyini): Evidence for a recent and complex diversification in South American open biomes	14
Phylogenomic insights into the temporal-spatial divergence history, evolution of leaf habit and hybridization in Stachyurus (Stachyuraceae)	14
Flower morphology is correlated with distribution and phylogeny in Bertolonia (Melastomataceae), an herbaceous genus endemic to the Atlantic Forest	14
Molecular phylogenetics of Lotus (Leguminosae) with emphasis in the tempo and patterns of colonization in the Macaronesian region	14
Evolution of protective symbiosis in palaemonid shrimps (Decapoda: Caridea) with emphases on host spectrum and morphological adaptations	14
Species delimitation analyses of NE Atlantic Chaetozone (Annelida, Cirratulidae) reveals hidden diversity among a common and abundant marine annelid	14
Phylogenomics of the aquatic plant genus Ottelia (Hydrocharitaceae): Implications for historical biogeography	14
Parallel decay of vision genes in subterranean water beetles	14
Comparative mitogenomics and phylogenetics of the stinging wasps (Hymenoptera: Aculeata)	14
Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics	14
Vastly underestimated species richness of Amazonian salamanders (Plethodontidae: Bolitoglossa) and implications about plethodontid diversification	14
New taxonomic and evolutionary insights relevant to the cat flea, Ctenocephalides felis: A geographic perspective	14
Cryptic species and host specificity in the bryozoan-associated hydrozoan Zanclea divergens (Hydrozoa, Zancleidae)	14
Coalescent-based delimitation and species-tree estimations reveal Appalachian origin and Neogene diversification in Russula subsection Roseinae	14

Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)	14
An ancient, Antarctic-specific species complex: large divergences between multiple Antarctic lineages of the tardigrade genus Mesobiotus	14
Molecular phylogeny and species delimitation of the genus Schizodon (Characiformes, Anostomidae)	14
Cryptic host-driven speciation of mobilid ciliates epibiotic on freshwater planarians	14
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)	13
Multilocus phylogeny of Bornean Bent-Toed geckos (Gekkonidae: Cyrtodactylus) reveals hidden diversity, taxonomic disarray, and novel biogeographic patterns	13
Genome-wide RAD sequencing resolves the evolutionary history of serrate leaf Juniperus and reveals discordance with chloroplast phylogeny	13
Revisiting the phylogeny of the genus Lolliguncula Steenstrup 1881 improves understanding of their biogeography and proves the validity of Lolliguncula argus Brakoniecki & Roper, 1985	13
Ancestral sequence reconstruction of ancient lipase from family I.3 bacterial lipolytic enzymes	13
Contrasting biogeographical patterns in Margarella (Gastropoda: Calliostomatidae: Margarellinae) across the Antarctic Polar Front	13
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)	13
Untangling filamentous marine cyanobacterial diversity from the coast of South Florida with the description of Vermifilaceae fam. nov. and three new genera: Leptochromothrix gen. nov., Ophiophycus gen	13
Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients	13
Re-evaluating and dating myriapod diversification with phylotranscriptomics under a regime of dense taxon sampling	13
Phylogeny and biogeography of Pachygoneae (Menispermaceae), with consideration of the boreotropical flora hypothesis and resurrection of the genera Cebatha and Nephroia	13
Climatic dynamics and topography control genetic variation in Atlantic Forest montane birds	13
Phylogenetic relationships of the Boana pulchella Group (Anura: Hylidae)	13
The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae)	13
Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny	13
Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow	13
Resolving complicated relationships of the Panax bipinnatifidus complex in southwestern China by RAD-seq data	12
Deciphering reticulate evolution of the largest group of polyploid vertebrates, the subfamily cyprininae (Teleostei: Cypriniformes)	12
Phylotranscriptomics reveals the evolutionary history of subtropical East Asian white pines: further insights into gymnosperm diversification	12
Evolutionary considerations of the oligosaccharyltransferase AglB and other aspects of N-glycosylation across Archaea	12
Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants	12
Phylogeography of Mytilisepta virgata (Mytilidae: Bivalvia) in the northwestern Pacific: Cryptic mitochondrial lineages and mito-nuclear discordance	12
Mitogenomics of Cladocera (Branchiopoda): Marked gene order rearrangements and independent predation roots	12
Homoploid hybrids, allopolyploids, and high ploidy levels characterize the evolutionary history of a western North American quillwort (Isoëtes) complex	12
Evolving in the darkness: Phylogenomics of Sinocyclocheilus cavefishes highlights recent diversification and cryptic diversity	12
Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes	12
Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits	12
Transcriptomic data reveals nuclear-mitochondrial discordance in Gomphocerinae grasshoppers (Insecta: Orthoptera: Acrididae)	12
Phylogenomics of the Mesoamerican alligator-lizard genera Abronia and Mesaspis (Anguidae: Gerrhonotinae) reveals multiple independent clades of arboreal and terrestrial species	12
The temporal dynamics of evolutionary diversification in Ipomoea	12
Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium	12
Discordant evolution of organellar genomes in peas (Pisum L.)	12
Rates and patterns of molecular evolution in bryophyte genomes, with focus on complex thalloid liverworts, Marchantiopsida	11
Plastome phylogeography in two African rain forest legume trees reveals that Dahomey Gap populations originate from the Cameroon volcanic line	11
Depth as a driver of evolution and diversification of ancient squat lobsters (Decapoda, Galatheoidea, Phylladiorhynchus)	11
Phylogeny and biogeography of Myrcia sect. Aguava (Myrtaceae, Myrteae) based on phylogenomic and Sanger data provide evidence for a Cerrado origin and geographically structured clades	11
A dated molecular phylogeny and biogeographical analysis reveals the evolutionary history of the trans-pacifically disjunct tropical tree genus Ormosia (Fabaceae)	11
A robust phylogenomic framework for the calamoid palms	11
Phylogenetic relationships and the evolution of host preferences in the largest clade of brood parasitic bees (Apidae: Nomadinae)	11
Mesozoic origin of coleoid cephalopods and their abrupt shifts of diversification patterns	11
How many long branch orders occur in Chelicerata? Opposing effects of Palpigradi and Opilioacariformes on phylogenetic stability	11
The roles of vicariance and dispersal in the differentiation of two species of the Rhinella marina species complex	11
Molecular phylogeny of Thoracotremata crabs (Decapoda, Brachyura): Toward adopting monophyletic superfamilies, invasion history into terrestrial habitats and multiple origins of symbiosis	11
A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history	11
New species boundaries and the diversification history of marsh rat taxa clarify historical connections among ecologically and geographically distinct wetlands of South America	11
A RADseq phylogeny of Barleria (Acanthaceae) resolves fine-scale relationships	11
Phylogenomics and molecular species delimitation reveals great cryptic diversity of leaf-toed geckos (Phyllodactylidae: Phyllodactylus), ancient origins, and diversification in Mexico	11
Analyses of chemosensory genes provide insight into the evolution of behavioral differences to phytochemicals in Bactrocera species	11
Combination of Sanger and target-enrichment markers supports revised generic delimitation in the problematic ‘Urera clade’ of the nettle family (Urticaceae)	11
A genomic survey of Tc1-mariner transposons in nematodes suggests extensive horizontal transposon transfer events	11
A multi-gene phylogenetic analysis of the leafhopper subfamily Typhlocybinae (Hemiptera: Cicadellidae) challenges the traditional view of the evolution of wing venation	11
The IS630/Tc1/mariner transposons in three ctenophore genomes	11
Phylogenetic relationships of the Chinese torrent frogs (Ranidae: Amolops) revealed by phylogenomic analyses of AFLP-Capture data	11
A comprehensive molecular phylogeny of Afrotropical white-eyes (Aves: Zosteropidae) highlights prior underestimation of mainland diversity and complex colonisation history	11
Further insights into the phylogeny of peniculid ciliates (Ciliophora, Oligohymenophorea) based on multigene data	11
Phylogeny and evolution of mycophagy in the Zygothrica genus group (Diptera: Drosophilidae)	11
Swimming through the sands of the Sahara and Arabian deserts: Phylogeny of sandfish skinks (Scincidae, Scincus) reveals a recent and rapid diversification	11
Genetic similarities versus morphological resemblance: Unraveling a polyploid complex in a Mediterranean biodiversity hotspot	11
Multilocus phylogeny of African striped grass mice (Lemniscomys): Stripe pattern only partly reflects evolutionary relationships	11
First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda)	11
A molecular phylogeny of forktail damselflies (genus Ischnura) reveals a dynamic macroevolutionary history of female colour polymorphisms	11
Tenebriella gen. nov. – The dark twin of Oscillatoria	11
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)	11
Plastomes in the holoparasitic family Balanophoraceae: Extremely high AT content, severe gene content reduction, and two independent genetic code changes	11
Cryptic diversity in the model fern genus Ceratopteris (Pteridaceae)	11
Diversification dynamics of freshwater bivalves (Unionidae: Parreysiinae: Coelaturini) indicate historic hydrographic connections throughout the East African Rift System	11
Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order Wilbertomorphida n. ord.	11
Plastome structure, evolution, and phylogeny of Selaginella	11
Homeologs of Brassica SOC1, a central regulator of flowering time, are differentially regulated due to partitioning of evolutionarily conserved transcription factor binding sites in promoters	11
Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders	11
Diversity, biogeography, and reproductive evolution in the genus Pipa (Amphibia: Anura: Pipidae)	11
A multilocus phylogeny of the non-photosynthetic parasitic plant Cistanche (Orobanchaceae) refutes current taxonomy and identifies four major morphologically distinct clades	11
Using ultraconserved elements to reconstruct the termite tree of life	10
Global dispersal and diversification in ground beetles of the subfamily Carabinae	10
Evolution of vector transmitted parasites by host switching revealed through sequencing of Haemoproteus parasite mitochondrial genomes	10
Evolutionary history of inquiline social parasitism in Plagiolepis ants	10
Comparison of sequence-capture and ddRAD approaches in resolving species and populations in hexacorallian anthozoans	10
Phylogeny and historical biogeography of the pantropical genus Parkia (Leguminosae, Caesalpinioideae, mimosoid clade)	10
Due South: The evolutionary history of Sub-Antarctic and Antarctic Tritoniidae nudibranchs	10
Diversification in Qinghai-Tibet Plateau: Orchidinae (Orchidaceae) clades exhibiting pre-adaptations play critical role	10
Phylogenomics of Porites from the Arabian Peninsula	10
One-way ticket to the blue: A large-scale, dated phylogeny revealed asymmetric land-to-water transitions in acariform mites (Acari: Acariformes)	10
Cyanobacteria in hot pursuit: Characterization of cyanobacteria strains, including novel taxa, isolated from geothermal habitats from different ecoregions of the world	10
Evolution between forest macrorefugia is linked to discordance between genetic and morphological variation in Neotropical passerines	10
Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order	10
Origin and evolution of the symbiosis between sea anemones (Cnidaria, Anthozoa, Actiniaria) and hermit crabs, with additional notes on anemone-gastropod associations	10
Comprehensive phylogeny of Myrmecocystus honey ants highlights cryptic diversity and infers evolution during aridification of the American Southwest	10
India’s biogeographic history through the eyes of blindsnakes- filling the gaps in the global typhlopoid phylogeny	10
Eight new mitogenomes clarify the phylogenetic relationships of Stromboidea within the caenogastropod phylogenetic framework	10
Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing	10
Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)	10