Molecular Phylogenetics and Evolution

Article	Citations
Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution	66
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome ski	65
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives	55
A phylogenomic analysis of Nepenthes (Nepenthaceae)	48
Formally described species woefully underrepresent phylogenetic diversity in the common lichen photobiont genus Trebouxia (Trebouxiophyceae, Chlorophyta): An impetus for developing an integrated taxon	47
Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae?	47
Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data	45
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes	44
Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data	44
Evolutionary rates of and selective constraints on the mitochondrial genomes of Orthoptera insects with different wing types	44
New multilocus phylogeny reorganises the family Macrobiotidae (Eutardigrada) and unveils complex morphological evolution of the Macrobiotus hufelandi group	40
Under the rug: Abandoning persistent misconceptions that obfuscate organelle evolution	40
Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers	39
A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system	38
Molecular phylogeny, historical biogeography and revised classification of andrenine bees (Hymenoptera: Andrenidae)	37
Phylogeny and classification of Odonata using targeted genomics	36
Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture	35
Reconstructing phylogenetic relationships based on repeat sequence similarities	34
Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma–Gastrochilus clades (Orchidaceae, Aeridinae)	34
A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)?	33
Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria	32
Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny	32
Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae	32
Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study	32
Phylogenomic relationships and character evolution of the grape family (Vitaceae)	31

Integrative description of bisexual Paramacrobiotus experimentalis sp. nov. (Macrobiotidae) from republic of Madagascar (Africa) with microbiome analysis	31
Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size	31
Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements	31
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy	30
Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway	30
New insights into the phylogeny and evolution of lady beetles (Coleoptera: Coccinellidae) by extensive sampling of genes and species	30
Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization	30
A novel reference dated phylogeny for the genus Spodoptera Guenée (Lepidoptera: Noctuidae: Noctuinae): new insights into the evolution of a pest-rich genus	30
Conservation and innovation: Plastome evolution during rapid radiation of Rhodiola on the Qinghai-Tibetan Plateau	29
Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana)	29
Phylogenomic analyses recover a clade of large-bodied decapodiform cephalopods	28
Out of the Himalaya-Hengduan Mountains: Phylogenomics, biogeography and diversification of Polygonatum Mill. (Asparagaceae) in the Northern Hemisphere	28
Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events	27
Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests	27
Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)	27
Biogeography of the cyanobacterium Raphidiopsis (Cylindrospermopsis) raciborskii: Integrating genomics, phylogenetic and toxicity data	27
Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha)	27
Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia	26
Resolving phylogeny and polyploid parentage using genus-wide genome-wide sequence data from birch trees	25
The phylogeny of the African wood mice (Muridae, Hylomyscus) based on complete mitochondrial genomes and five nuclear genes reveals their evolutionary history and undescribed diversity	25
Cryptic ecological and geographic diversification in coral-associated nudibranchs	24
Molecular phylogenetic assessment of the tribal classification of Lamiinae (Coleoptera: Cerambycidae)	24
Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): Molecular species delimitation and morphometric analyses	24
Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus	24
More is needed—Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)	24
Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga)	23
Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)	23
Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses	23
Implications of plastome evolution in the true lilies (monocot order Liliales)	23
Large-scale phylogenomic analysis provides new insights into the phylogeny of the class Oligohymenophorea (Protista, Ciliophora) with establishment of a new subclass Urocentria nov. subcl	23
An integrative phylogenomic approach illuminates the evolutionary history of Old World tree frogs (Anura: Rhacophoridae)	22
Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta)	22
Out of Africa: The origins of the protozoan blood parasites of the Trypanosoma cruzi clade found in bats from Africa	22
Resolving relationships in an exceedingly young Neotropical orchid lineage using Genotyping-by-sequencing data	22
Plastomes from tribe Plantagineae (Plantaginaceae) reveal infrageneric structural synapormorphies and localized hypermutation for Plantago and functional loss of ndh genes from Littorella	22
A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths	22
Tempo and mode of evolution of oryzomyine rodents (Rodentia, Cricetidae, Sigmodontinae): A phylogenomic approach	21
Phylogenomic framework of the IRLC legumes (Leguminosae subfamily Papilionoideae) and intercontinental biogeography of tribe Wisterieae	21
How mitonuclear discordance and geographic variation have confounded species boundaries in a widely studied snake	21
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae)	21
Phylogenomics, co-evolution of ecological niche and morphology, and historical biogeography of buckeyes, horsechestnuts, and their relatives (Hippocastaneae, Sapindaceae) and the value of RAD-Seq for	21
Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness	20
Polyploidy in gymnosperms – Insights into the genomic and evolutionary consequences of polyploidy in Ephedra	20
Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean	20
An alpine grasshopper radiation older than the mountains, on Kā Tiritiri o te Moana (Southern Alps) of Aotearoa (New Zealand)	20
Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders	20
Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography	20
Phylogeny and time scale of diversification in the fossil-rich sunfishes and black basses (Teleostei: Percomorpha: Centrarchidae)	20
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)	20
Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae)	19

A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae)	19
Diversification history of clown tree frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group)	19
Cryptic diversity and non-adaptive radiation of montane New Guinea skinks (Papuascincus; Scincidae)	19
A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ra	19
ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae)	19
Phylogenomic inference of species and subspecies diversity in the Palearctic salamander genus Salamandra	19
Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)	19
Diversity, biogeography, evolutionary relationships, and conservation of Eastern Mediterranean freshwater mussels (Bivalvia: Unionidae)	19
RAD sequencing resolves the phylogeny, taxonomy and biogeography of Trichophoreae despite a recent rapid radiation (Cyperaceae)	18
Multigene phylogeny uncovers oviposition-related evolutionary history of Cerambycinae (Coleoptera: Cerambycidae)	18
Genome-wide data reveal discordant mitonuclear introgression in the intermediate horseshoe bat (Rhinolophus affinis)	18
Plastome phylogenomics, systematics, and divergence time estimation of the Beilschmiedia group (Lauraceae)	18
Phylotranscriptomics reveals the complex evolutionary and biogeographic history of the genus Tsuga with an East Asian-North American disjunct distribution	18
Analysis of ultraconserved elements supports African origins of narrow-mouthed frogs	18
Revealing new sponge-associated cyanobacterial diversity: Novel genera and species	18
Cryptic diversity and ancient diversification in the northern Atlantic Forest Pristimantis (Amphibia, Anura, Craugastoridae)	18
A taxonomist‘s nightmare – Cryptic diversity in Caribbean intertidal arthropods (Arachnida, Acari, Oribatida)	18
Phylogenomics of braconid wasps (Hymenoptera, Braconidae) sheds light on classification and the evolution of parasitoid life history traits	18
Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes	18
Poor performance of DNA barcoding and the impact of RAD loci filtering on the species delimitation of an Iberian ant-eating spider	17
Phylomitogenomics provides new perspectives on the Euphasmatodea radiation (Insecta: Phasmatodea)	17
Unraveling the systematics and evolution of the ‘Geophagus’ brasiliensis (Cichliformes: Cichlidae) species complex	17
Early eukaryotic origins and metazoan elaboration of MAPR family proteins	17
Another blow to the conserved gene order in Annelida: Evidence from mitochondrial genomes of the calcareous tubeworm genus Hydroides	17
Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology	17
Genomic fingerprints of palaeogeographic history: The tempo and mode of rift tectonics across tropical Africa has shaped the diversification of the killifish genus Nothobranchius (Teleostei: Cyprinodo	17
Multilocus phylogeny of Paratelmatobiinae (Anura: Leptodactylidae) reveals strong spatial structure and previously unknown diversity in the Atlantic Forest hotspot	17
Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae)	17
Systematics and geographical distribution of Galba species, a group of cryptic and worldwide freshwater snails	17
New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels	17
A phylogeny for the Drosophila montium species group: A model clade for comparative analyses	17
Unravelling unknown cyanobacteria diversity linked with HCN production	16
Shining a light on species delimitation in the tree genus Engelhardia Leschenault ex Blume (Juglandaceae)	16
Evolution of Sri Lanka’s Giant Danios (Teleostei: Cyprinidae: Devario): Teasing apart species in a recent diversification	16
Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birds	16
Predatory colponemids are the sister group to all other alveolates	16
Unique environmental Symbiodiniaceae diversity at an isolated island in the northwestern Pacific	16
Genetic changes and host adaptability in sugarcane mosaic virus based on complete genome sequences	16
Comparative phylogeographic and demographic analyses reveal a congruent pattern of sister relationships between bird populations of the northern and south-central Atlantic Forest	16
The biogeography of Dromiciops in southern South America: Middle Miocene transgressions, speciation and associations with Nothofagus	16
The phylogenetic relationship within SARS-CoV-2s: An expanding basal clade	15
Phylogenomic analyses of mud dragons (Kinorhyncha)	15
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia)	15
Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)	15
New insights into the evolution of the fern family Dennstaedtiaceae from an expanded molecular phylogeny and morphological analysis	15
Trait-dependent dispersal in rails (Aves: Rallidae): Historical biogeography of a cosmopolitan bird clade	15
Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)	15
Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae	15
Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: First fully resolved phylogeny, evolutionary history and delimitation of extant genera	15
Molecular systematics and biogeographic history of the African climbing-mouse complex (Dendromus)	15
Genetic variation and admixture of red-eared sliders (Trachemys scripta elegans) in the USA	15
Quaternary climatic fluctuations influence the demographic history of two species of sky-island endemic amphibians in the Neotropics	15
Evolutionary history of inversions in directional mutational pressures in crustacean mitochondrial genomes: Implications for evolutionary studies	15
Molecular phylogeny, classification, biogeography and diversification patterns of a diverse group of moths (Geometridae: Boarmiini)	15
The potential of genome-wide RAD sequences for resolving rapid radiations: a case study in Cactaceae	15
The impact of Miocene orogeny for the diversification of Caucasian Epeorus (Caucasiron) mayflies (Ephemeroptera: Heptageniidae)	15
Historical biogeography of Pomaderris (Rhamnaceae): Continental vicariance in Australia and repeated independent dispersals to New Zealand	15
Phylogenetics and the evolution of terrestriality in mudskippers (Gobiidae: Oxudercinae)	15
Phylogenomics of the aquatic plant genus Ottelia (Hydrocharitaceae): Implications for historical biogeography	14
Parallel decay of vision genes in subterranean water beetles	14
Molecular Phylogeny of Cryptonanus (Didelphidae: Thylamyini): Evidence for a recent and complex diversification in South American open biomes	14
Flower morphology is correlated with distribution and phylogeny in Bertolonia (Melastomataceae), an herbaceous genus endemic to the Atlantic Forest	14
The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus	14
New taxonomic and evolutionary insights relevant to the cat flea, Ctenocephalides felis: A geographic perspective	14
Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs	14
Lost in translation: Population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron	14
Phylogenomic data resolve higher-level relationships within South American Liolaemus lizards	14
Taming the Red Bastards: Hybridisation and species delimitation in the Rhodanthemum arundanum-group (Compositae, Anthemideae)	14
Molecular phylogeny and species delimitation of the genus Schizodon (Characiformes, Anostomidae)	14
Vastly underestimated species richness of Amazonian salamanders (Plethodontidae: Bolitoglossa) and implications about plethodontid diversification	14
Evolution of protective symbiosis in palaemonid shrimps (Decapoda: Caridea) with emphases on host spectrum and morphological adaptations	14
Cryptic species and host specificity in the bryozoan-associated hydrozoan Zanclea divergens (Hydrozoa, Zancleidae)	14
Species delimitation analyses of NE Atlantic Chaetozone (Annelida, Cirratulidae) reveals hidden diversity among a common and abundant marine annelid	14
A timetree for phytoplasmas (Mollicutes) with new insights on patterns of evolution and diversification	14
Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)	14
A 313 plastome phylogenomic analysis of Pooideae: Exploring relationships among the largest subfamily of grasses	14
Cryptic host-driven speciation of mobilid ciliates epibiotic on freshwater planarians	14
Reconstruction of the evolutionary biogeography reveal the origins and diversification of oysters (Bivalvia: Ostreidae)	14
Phylogenomics of the Neotropical fish family Serrasalmidae with a novel intrafamilial classification (Teleostei: Characiformes)	14
Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration models	14

Phylogenetics of mud snakes (Squamata: Serpentes: Homalopsidae): A paradox of both undescribed diversity and taxonomic inflation	14
Coalescent-based delimitation and species-tree estimations reveal Appalachian origin and Neogene diversification in Russula subsection Roseinae	14
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)	13
Genome-wide RAD sequencing resolves the evolutionary history of serrate leaf Juniperus and reveals discordance with chloroplast phylogeny	13
Comparative mitogenomics and phylogenetics of the stinging wasps (Hymenoptera: Aculeata)	13
An ancient, Antarctic-specific species complex: large divergences between multiple Antarctic lineages of the tardigrade genus Mesobiotus	13
Multiple species delimitation approaches applied to the avian lark genus Alaudala	13
Cophylogenetic patterns in algal symbionts correlate with repeated symbiont switches during diversification and geographic expansion of lichen-forming fungi in the genus Sticta (Ascomycota, Peltigerac	13
Untangling filamentous marine cyanobacterial diversity from the coast of South Florida with the description of Vermifilaceae fam. nov. and three new genera: Leptochromothrix gen. nov., Ophiophycus gen	13
Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients	13
Plastome evolution and phylogeny of subtribe Aeridinae (Vandeae, Orchidaceae)	13
Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics	13
Phylogeography, speciation and demographic history: Contrasting evidence from mitochondrial and nuclear markers of the Odorrana graminea sensu lato (Anura, Ranidae) in China	13
Contrasting biogeographical patterns in Margarella (Gastropoda: Calliostomatidae: Margarellinae) across the Antarctic Polar Front	13
Phylogenetic relationships of the Boana pulchella Group (Anura: Hylidae)	13
Revisiting the phylogeny of the genus Lolliguncula Steenstrup 1881 improves understanding of their biogeography and proves the validity of Lolliguncula argus Brakoniecki & Roper, 1985	13
The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae)	13
Molecular phylogenetics of Lotus (Leguminosae) with emphasis in the tempo and patterns of colonization in the Macaronesian region	13
Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow	13
Homoploid hybrids, allopolyploids, and high ploidy levels characterize the evolutionary history of a western North American quillwort (Isoëtes) complex	12
Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium	12
A comprehensive phylogeny helps clarify the evolutionary history of host breadth and lure response in the Australian Dacini fruit flies (Diptera: Tephritidae)	12
Ancestral sequence reconstruction of ancient lipase from family I.3 bacterial lipolytic enzymes	12
Phylogeography of Mytilisepta virgata (Mytilidae: Bivalvia) in the northwestern Pacific: Cryptic mitochondrial lineages and mito-nuclear discordance	12
Climatic dynamics and topography control genetic variation in Atlantic Forest montane birds	12
Phylogenomics of the Mesoamerican alligator-lizard genera Abronia and Mesaspis (Anguidae: Gerrhonotinae) reveals multiple independent clades of arboreal and terrestrial species	12
Phylotranscriptomics reveals the evolutionary history of subtropical East Asian white pines: further insights into gymnosperm diversification	12
Phylogenomic insights into the temporal-spatial divergence history, evolution of leaf habit and hybridization in Stachyurus (Stachyuraceae)	12
Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes	12
Transcriptomic data reveals nuclear-mitochondrial discordance in Gomphocerinae grasshoppers (Insecta: Orthoptera: Acrididae)	12
Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants	12
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)	12
Multilocus phylogeny of Bornean Bent-Toed geckos (Gekkonidae: Cyrtodactylus) reveals hidden diversity, taxonomic disarray, and novel biogeographic patterns	12
Deciphering reticulate evolution of the largest group of polyploid vertebrates, the subfamily cyprininae (Teleostei: Cypriniformes)	12
The temporal dynamics of evolutionary diversification in Ipomoea	12
Evolutionary considerations of the oligosaccharyltransferase AglB and other aspects of N-glycosylation across Archaea	12
Discordant evolution of organellar genomes in peas (Pisum L.)	12
Sympatric lineages in the Mantidactylus ambreensis complex of Malagasy frogs originated allopatrically rather than by in-situ speciation	12
Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits	12
Mitogenomics of Cladocera (Branchiopoda): Marked gene order rearrangements and independent predation roots	12
Depth as a driver of evolution and diversification of ancient squat lobsters (Decapoda, Galatheoidea, Phylladiorhynchus)	11
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)	11
Plastomes in the holoparasitic family Balanophoraceae: Extremely high AT content, severe gene content reduction, and two independent genetic code changes	11
Phylogenetic relationships and the evolution of host preferences in the largest clade of brood parasitic bees (Apidae: Nomadinae)	11
Deconstructing Difflugia: The tangled evolution of lobose testate amoebae shells (Amoebozoa: Arcellinida) illustrates the importance of convergent evolution in protist phylogeny	11
Mesozoic origin of coleoid cephalopods and their abrupt shifts of diversification patterns	11
A multilocus phylogeny of the non-photosynthetic parasitic plant Cistanche (Orobanchaceae) refutes current taxonomy and identifies four major morphologically distinct clades	11
How many long branch orders occur in Chelicerata? Opposing effects of Palpigradi and Opilioacariformes on phylogenetic stability	11
Phylogeny and biogeography of Pachygoneae (Menispermaceae), with consideration of the boreotropical flora hypothesis and resurrection of the genera Cebatha and Nephroia	11
Swimming through the sands of the Sahara and Arabian deserts: Phylogeny of sandfish skinks (Scincidae, Scincus) reveals a recent and rapid diversification	11
Multilocus phylogeny of African striped grass mice (Lemniscomys): Stripe pattern only partly reflects evolutionary relationships	11
Plastome phylogeography in two African rain forest legume trees reveals that Dahomey Gap populations originate from the Cameroon volcanic line	11
Analyses of chemosensory genes provide insight into the evolution of behavioral differences to phytochemicals in Bactrocera species	11
Combination of Sanger and target-enrichment markers supports revised generic delimitation in the problematic ‘Urera clade’ of the nettle family (Urticaceae)	11
A robust phylogenomic framework for the calamoid palms	11
Evolving in the darkness: Phylogenomics of Sinocyclocheilus cavefishes highlights recent diversification and cryptic diversity	11
Re-evaluating and dating myriapod diversification with phylotranscriptomics under a regime of dense taxon sampling	11
Plastome structure, evolution, and phylogeny of Selaginella	11
Phylogenetic relationships of the Chinese torrent frogs (Ranidae: Amolops) revealed by phylogenomic analyses of AFLP-Capture data	11
Phylogeny and evolution of mycophagy in the Zygothrica genus group (Diptera: Drosophilidae)	11
Further insights into the phylogeny of peniculid ciliates (Ciliophora, Oligohymenophorea) based on multigene data	11
Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders	11
Diversity, biogeography, and reproductive evolution in the genus Pipa (Amphibia: Anura: Pipidae)	11
First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda)	11
A molecular phylogeny of forktail damselflies (genus Ischnura) reveals a dynamic macroevolutionary history of female colour polymorphisms	11
Phylogeny and biogeography of Myrcia sect. Aguava (Myrtaceae, Myrteae) based on phylogenomic and Sanger data provide evidence for a Cerrado origin and geographically structured clades	11
A genomic survey of Tc1-mariner transposons in nematodes suggests extensive horizontal transposon transfer events	11
A multi-gene phylogenetic analysis of the leafhopper subfamily Typhlocybinae (Hemiptera: Cicadellidae) challenges the traditional view of the evolution of wing venation	11
Cryptic diversity in the model fern genus Ceratopteris (Pteridaceae)	11
Diversification dynamics of freshwater bivalves (Unionidae: Parreysiinae: Coelaturini) indicate historic hydrographic connections throughout the East African Rift System	11
The roles of vicariance and dispersal in the differentiation of two species of the Rhinella marina species complex	11
Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order Wilbertomorphida n. ord.	11
A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history	11
Homeologs of Brassica SOC1, a central regulator of flowering time, are differentially regulated due to partitioning of evolutionarily conserved transcription factor binding sites in promoters	11
Genetic similarities versus morphological resemblance: Unraveling a polyploid complex in a Mediterranean biodiversity hotspot	11
Phylogenomics and molecular species delimitation reveals great cryptic diversity of leaf-toed geckos (Phyllodactylidae: Phyllodactylus), ancient origins, and diversification in Mexico	11
Resolving complicated relationships of the Panax bipinnatifidus complex in southwestern China by RAD-seq data	11
Codon use and aversion is largely phylogenetically conserved across the tree of life	10
Using ultraconserved elements to reconstruct the termite tree of life	10
The IS630/Tc1/mariner transposons in three ctenophore genomes	10
Evolution of vector transmitted parasites by host switching revealed through sequencing of Haemoproteus parasite mitochondrial genomes	10
Hidden cases of tRNA gene duplication and remolding in mitochondrial genomes of amphipods	10
Due South: The evolutionary history of Sub-Antarctic and Antarctic Tritoniidae nudibranchs	10
Tenebriella gen. nov. – The dark twin of Oscillatoria	10
Repeated intercontinental migrations and recurring hybridizations characterise the evolutionary history of yew (Taxus L.)	10
Diversification in Qinghai-Tibet Plateau: Orchidinae (Orchidaceae) clades exhibiting pre-adaptations play critical role	10
A comprehensive molecular phylogeny of Afrotropical white-eyes (Aves: Zosteropidae) highlights prior underestimation of mainland diversity and complex colonisation history	10
India’s biogeographic history through the eyes of blindsnakes- filling the gaps in the global typhlopoid phylogeny	10
Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing	10
A phylotranscriptome study using silica gel-dried leaf tissues produces an updated robust phylogeny of Ranunculaceae	10
Neogene speciation and Pleistocene expansion of the genus Pseudephebe (Parmeliaceae, lichenized fungi) involving multiple colonizations of Antarctica	10
Origin and evolution of the symbiosis between sea anemones (Cnidaria, Anthozoa, Actiniaria) and hermit crabs, with additional notes on anemone-gastropod associations	10
Comprehensive phylogeny of Myrmecocystus honey ants highlights cryptic diversity and infers evolution during aridification of the American Southwest	10
Evolutionary history of inquiline social parasitism in Plagiolepis ants	10
Phylogeny and historical biogeography of the pantropical genus Parkia (Leguminosae, Caesalpinioideae, mimosoid clade)	10