OOIR: Observatory of International Research

Papers

(The H4-Index of Protein Science is 39. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions	969
PANTHER: Making genome‐scale phylogenetics accessible to all	815
UCSF ChimeraX: Tools for structure building and analysis	575
KEGG mapping tools for uncovering hidden features in biological data	427
DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data	258
DALI shines a light on remote homologs: One hundred discoveries	215
BenchmarkingAlphaFoldfor protein complex modeling reveals accuracy determinants	192
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences	141
Spatial arrangement of proteins in planar and curved membranes by PPM 3.0	136
Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf	134
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis	133
Improved coarse‐grained model for studying sequence dependent phase separation of disordered proteins	124
The Human Protein Atlas—Spatial localization of the human proteome in health and disease	121
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D	103
Leginon: New features and applications	102
Nanodiscs: A toolkit for membrane protein science	93
AlphaFold2 fails to predict protein fold switching	90
Characterization of the SARS‐CoV‐2 E Protein: Sequence, Structure, Viroporin, and Inhibitors	85
PANNZER—A practical tool for protein function prediction	77
BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models	75
DIALS as a toolkit	75
Liquid–liquid phase separation of tau: From molecular biophysics to physiology and disease	72
Interplay between tau and α‐synuclein liquid–liquid phase separation	63
Intrinsic protein disorder and conditional folding in AlphaFoldDB	59
Structural and functional understanding of the toll‐like receptors	56

Multiple sites on SARS‐CoV‐2 spike protein are susceptible to proteolysis by cathepsins B, K, L, S, and V	53
PDB‐101: Educational resources supporting molecular explorations through biology and medicine	52
PDBsum extras: SARS‐CoV‐2 and AlphaFold models	50
Rapid prediction and analysis of protein intrinsic disorder	50
ArtiaX: An electron tomography toolbox for the interactive handling of sub‐tomograms in UCSF ChimeraX	48
In‐depth interrogation of protein thermal unfolding data with MoltenProt	45
Evaluation of AlphaFold2 structures as docking targets	45
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D	44
qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps	44
Crystallographic molecular replacement using an in silico‐generated search model of SARS‐CoV‐2 ORF8	43
NMR hawk‐eyed view of AlphaFold2 structures	42
Liquid–liquid phase separation of Tau by self and complex coacervation	42
Adenosine triphosphate energy‐independently controls protein homeostasis with unique structure and diverse mechanisms	42
The evolution of the antimicrobial peptide database over 18 years: Milestones and new features	41
Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure	39