Protein Science

Papers
(The H4-Index of Protein Science is 40. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)
ArticleCitations
UCSF ChimeraX: Structure visualization for researchers, educators, and developers4322
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions730
PANTHER: Making genome‐scale phylogenetics accessible to all454
Current developments in Coot for macromolecular model building of Electron Cryo‐microscopy and Crystallographic Data389
KEGG mapping tools for uncovering hidden features in biological data344
Crystal structure of Nsp15 endoribonuclease NendoU from SARS‐CoV‐2265
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations231
DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data200
Architecture and self‐assembly of the SARS‐CoV‐2 nucleocapsid protein193
The Bio3D packages for structural bioinformatics190
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants129
DALI shines a light on remote homologs: One hundred discoveries97
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis95
The Human Protein Atlas—Spatial localization of the human proteome in health and disease94
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences93
UCSF ChimeraX: Tools for structure building and analysis91
Spatial arrangement of proteins in planar and curved membranes by PPM 3.084
Improved coarse‐grained model for studying sequence dependent phase separation of disordered proteins84
The AutoDock suite at 3081
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D81
Nanodiscs: A toolkit for membrane protein science74
Leginon: New features and applications73
Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf68
Characterization of the SARS‐CoV‐2 E Protein: Sequence, Structure, Viroporin, and Inhibitors64
AlphaFold2 fails to predict protein fold switching62
Liquid–liquid phase separation of tau: From molecular biophysics to physiology and disease53
DIALS as a toolkit53
PANNZER—A practical tool for protein function prediction51
PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system50
Interplay between tau and α‐synuclein liquid–liquid phase separation49
A mechanistic view of enzyme evolution48
Comparing the binding properties of peptides mimicking the Envelope protein of SARS‐CoV and SARS‐CoV‐2 to the PDZ domain of the tight junction‐associated PALS147
Multiple sites on SARS‐CoV‐2 spike protein are susceptible to proteolysis by cathepsins B, K, L, S, and V44
Toward a new picture of the living plasma membrane44
Progress toward Alzheimer's disease treatment: Leveraging the Achilles' heel of Aβ oligomers?44
The function of histone lysine methylation related SET domain group proteins in plants44
How to use the MEROPS database and website to help understand peptidase specificity43
Structural and functional understanding of the toll‐like receptors43
PDB‐101: Educational resources supporting molecular explorations through biology and medicine41
Intrinsic protein disorder and conditional folding in AlphaFoldDB40
Crystallographic molecular replacement using an in silico‐generated search model of SARS‐CoV‐2 ORF840
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